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The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
Eugene V Koonin
Biol Direct. 2006; 1: 22. Published online 2006 August 14. doi: 10.1186/1745-6150-1-22
PMCID:
PMC1570339
Abstract Full Text PDF–474K

Is Cited by the Following 27 Articles in this Archive:

The Function of Introns
Michal Chorev, Liran Carmel
Front Genet. 2012; 3: 55. Prepublished online 2012 March 5. Published online 2012 April 13. doi: 10.3389/fgene.2012.00055
PMCID:
PMC3325483
Abstract Full Text PDF–1.2M
Mitochondrial Adenine Nucleotide Transport and Cardioprotection
Samarjit Das, Charles Steenbergen
J Mol Cell Cardiol. Author manuscript; available in PMC 2013 February 1.
Published in final edited form as: J Mol Cell Cardiol. 2012 February; 52(2): 448–453. Published online 2011 September 17. doi: 10.1016/j.yjmcc.2011.09.007
PMCID:
PMC3253329
Free in PMC on 2013/02/01
Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs
Abhishek Kumar, Anita Bhandari, Rahul Sinha, Pankaj Goyal, Alessandro Grapputo
PLoS One. 2011; 6(8): e22046. Published online 2011 August 5. doi: 10.1371/journal.pone.0022046
PMCID:
PMC3151243
Abstract Full Text PDF–908K Supplementary Material
Energetics and genetics across the prokaryote-eukaryote divide
Nick Lane
Biol Direct. 2011; 6: 35. Published online 2011 June 30. doi: 10.1186/1745-6150-6-35
PMCID:
PMC3152533
Abstract Full Text PDF–1.2M
A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes
Diana Chernikova, Sam Motamedi, Miklós Csürös, Eugene V Koonin, Igor B Rogozin
Biol Direct. 2011; 6: 26. Published online 2011 May 19. doi: 10.1186/1745-6150-6-26
PMCID:
PMC3125394
Abstract Full Text PDF–1.2M Supplementary Material
Why eukaryotic cells use introns to enhance gene expression: Splicing reduces transcription-associated mutagenesis by inhibiting topoisomerase I cutting activity
Deng-Ke Niu, Yu-Fei Yang
Biol Direct. 2011; 6: 24. Published online 2011 May 18. doi: 10.1186/1745-6150-6-24
PMCID:
PMC3118952
Abstract Full Text PDF–334K
DNA double-strand break repair and the evolution of intron density
Ashley Farlow, Eshwar Meduri, Christian Schlötterer
Trends Genet. 2011 January; 27(1): 1–6. doi: 10.1016/j.tig.2010.10.004
PMCID:
PMC3020277
Abstract Full Text Supplementary Material
The origin and early evolution of eukaryotes in the light of phylogenomics
Eugene V Koonin
Genome Biol. 2010; 11(5): 209. Published online 2010 May 5. doi: 10.1186/gb-2010-11-5-209
PMCID:
PMC2898073
Abstract Full Text PDF–814K
Tubulin evolution in insects: gene duplication and subfunctionalization provide specialized isoforms in a functionally constrained gene family
Mark G Nielsen, Sudhindra R Gadagkar, Lisa Gutzwiller
BMC Evol Biol. 2010; 10: 113. Published online 2010 April 27. doi: 10.1186/1471-2148-10-113
PMCID:
PMC2880298
Abstract Full Text PDF–1.1M Supplementary Material
Nuclear expression of a group II intron is consistent with spliceosomal intron ancestry
Venkata R. Chalamcharla, M. Joan Curcio, Marlene Belfort
Genes Dev. 2010 April 15; 24(8): 827–836. doi: 10.1101/gad.1905010
PMCID:
PMC2854396
Abstract Full Text PDF–749K
A structural analysis of the group II intron active site and implications for the spliceosome
Kevin S. Keating, Navtej Toor, Philip S. Perlman, Anna Marie Pyle
RNA. 2010 January; 16(1): 1–9. doi: 10.1261/rna.1791310
PMCID:
PMC2802019
Abstract Full Text PDF–843K
Extensive mis-splicing of a bi-partite plant mitochondrial group II intron
Helen Elina, Gregory G. Brown
Nucleic Acids Res. 2010 January; 38(3): 996–1008. Published online 2010 January. doi: 10.1093/nar/gkp994
PMCID:
PMC2817487
Abstract Full Text PDF–911K Supplementary Material
Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements
Kristen S Swithers, Alireza G Senejani, Gregory P Fournier, J Peter Gogarten
BMC Evol Biol. 2009; 9: 303. Published online 2009 December 31. doi: 10.1186/1471-2148-9-303
PMCID:
PMC2814812
Abstract Full Text PDF–858K Supplementary Material
Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity
Natalya Yutin, Eugene V Koonin
Biol Direct. 2009; 4: 51. Published online 2009 December 18. doi: 10.1186/1745-6150-4-51
PMCID:
PMC2806865
Abstract Full Text PDF–399K Supplementary Material
Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes
Hermann Ragg, Abhishek Kumar, Katharina Köster, Caterina Bentele, Yunjie Wang, Marc-André Frese, Natalie Prib, Olaf Krüger
BMC Evol Biol. 2009; 9: 208. Published online 2009 August 22. doi: 10.1186/1471-2148-9-208
PMCID:
PMC2746811
Abstract Full Text PDF–3.3M Supplementary Material
Global discovery of primate-specific genes in the human genome
Sen-Kwan Tay, Jason Blythe, Leonard Lipovich
Proc Natl Acad Sci U S A. 2009 July 21; 106(29): 12019–12024. Published online 2009 July 6. doi: 10.1073/pnas.0904569106
Correction in:
Proc Natl Acad Sci U S A. 2009 August 18; 106(33): 14180.
PMCID:
PMC2715485
Abstract Full Text PDF–562K Supplementary Material Correction
The Eukaryotic Cell Originated in the Integration and Redistribution of Hyperstructures from Communities of Prokaryotic Cells Based on Molecular Complementarity
Vic Norris, Robert Root-Bernstein
Int J Mol Sci. 2009 June; 10(6): 2611–2632. Published online 2009 June 4. doi: 10.3390/ijms10062611
PMCID:
PMC2705508
Abstract Full Text PDF–129K
Exon definition as a potential negative force against intron losses in evolution
Deng-Ke Niu
Biol Direct. 2008; 3: 46. Published online 2008 November 13. doi: 10.1186/1745-6150-3-46
PMCID:
PMC2614967
Abstract Full Text PDF–265K Supplementary Material
Intron Presence–Absence Polymorphisms in Daphnia
Angela R. Omilian, Douglas G. Scofield, Michael Lynch
Mol Biol Evol. 2008 October; 25(10): 2129–2139. Published online 2008 July 29. doi: 10.1093/molbev/msn164
PMCID:
PMC2727387
Abstract Full Text PDF–744K Supplementary Material
Origin of eukaryotic cells as a symbiosis of parasitic α-proteobacteria in the periplasm of two-membrane-bounded sexual pre-karyotes
Matej Vesteg, Juraj Krajčovič
Commun Integr Biol. 2008 Jul-Sep; 1(1): 104–113.
PMCID:
PMC2633810
Abstract Full Text PDF–346K
Patterns of intron gain and conservation in eukaryotic genes
Liran Carmel, Igor B Rogozin, Yuri I Wolf, Eugene V Koonin
BMC Evol Biol. 2007; 7: 192. Published online 2007 October 12. doi: 10.1186/1471-2148-7-192
PMCID:
PMC2151770
Abstract Full Text PDF–451K Supplementary Material
The Biological Big Bang model for the major transitions in evolution
Eugene V Koonin
Biol Direct. 2007; 2: 21. Published online 2007 August 20. doi: 10.1186/1745-6150-2-21
PMCID:
PMC1973067
Abstract Full Text PDF–467K
The frailty of adaptive hypotheses for the origins of organismal complexity
Michael Lynch
Proc Natl Acad Sci U S A. 2007 May 15; 104(suppl. 1): 8597–8604. doi: 10.1073/pnas.0702207104
PMCID:
PMC1876435
Abstract Full Text PDF–446K
Protecting exons from deleterious R-loops: a potential advantage of having introns
Deng-Ke Niu
Biol Direct. 2007; 2: 11. Published online 2007 April 25. doi: 10.1186/1745-6150-2-11
PMCID:
PMC1863416
Abstract Full Text PDF–343K
Conserved intron positions in ancient protein modules
Albert DG de Roos
Biol Direct. 2007; 2: 7. Published online 2007 February 8. doi: 10.1186/1745-6150-2-7
PMCID:
PMC1800838
Abstract Full Text PDF–1.0M Supplementary Material
Origin of phagotrophic eukaryotes as social cheaters in microbial biofilms
Gáspár Jékely
Biol Direct. 2007; 2: 3. Published online 2007 January 19. doi: 10.1186/1745-6150-2-3
PMCID:
PMC1794243
Abstract Full Text PDF–435K
Did group II intron proliferation in an endosymbiont-bearing archaeon create eukaryotes?
Anthony M Poole
Biol Direct. 2006; 1: 36. Published online 2006 December 7. doi: 10.1186/1745-6150-1-36
PMCID:
PMC1712230
Abstract Full Text PDF–242K
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