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Genomic analysis of the eukaryotic protein kinase superfamily: a perspective
Steven K Hanks
Genome Biol. 2003; 4(5): 111. Published online 2003 April 29. doi: 10.1186/gb-2003-4-5-111
PMCID:
PMC156577
Abstract Full Text PDF–91K Supplementary Material

Is Cited by the Following 30 Articles in this Archive:

Computational Design of Targeted Inhibitors of Polo-Like Kinase 1 (Plk1)
Krupa S. Jani, D.S. Dalafave
Bioinform Biol Insights. 2012; 6: 23–31. Published online 2012 February 20. doi: 10.4137/BBI.S8971
PMCID:
PMC3290105
Abstract Full Text PDF–917K
CAST AWAY, a Membrane-Associated Receptor-Like Kinase, Inhibits Organ Abscission in Arabidopsis
Christian A. Burr, Michelle E. Leslie, Sara K. Orlowski, Iris Chen, Catherine E. Wright, Mark J. Daniels, Sarah J. Liljegren
Plant Physiol. 2011 August; 156(4): 1837–1850. Published online 2011 May 31. doi: 10.1104/pp.111.175224
PMCID:
PMC3149937
Abstract Full Text PDF–1.6M
Eukaryotic Protein Kinases (ePKs) of the Helminth Parasite Schistosoma mansoni
Luiza F Andrade, Laila A Nahum, Lívia GA Avelar, Larissa L Silva, Adhemar Zerlotini, Jerônimo C Ruiz, Guilherme Oliveira
BMC Genomics. 2011; 12: 215. Published online 2011 May 6. doi: 10.1186/1471-2164-12-215
PMCID:
PMC3117856
Abstract Full Text PDF–3.4M Supplementary Material
Protein Kinase LegK2 Is a Type IV Secretion System Effector Involved in Endoplasmic Reticulum Recruitment and Intracellular Replication of Legionella pneumophila
Eva Hervet, Xavier Charpentier, Anne Vianney, Jean-Claude Lazzaroni, Christophe Gilbert, Danièle Atlan, Patricia Doublet
Infect Immun. 2011 May; 79(5): 1936–1950. doi: 10.1128/IAI.00805-10
PMCID:
PMC3088141
Abstract Full Text PDF–2.0M
Expression of the Human Atypical Kinase ADCK3 Rescues Coenzyme Q Biosynthesis and Phosphorylation of Coq Polypeptides in Yeast coq8 Mutants
Letian X. Xie, Edward J. Hsieh, Shota Watanabe, Christopher M. Allan, Jia Y. Chen, UyenPhuong C. Tran, Catherine F. Clarke
Biochim Biophys Acta. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Biochim Biophys Acta. 2011 May; 1811(5): 348–360. Published online 2011 February 4. doi: 10.1016/j.bbalip.2011.01.009
PMCID:
PMC3075350
Abstract Full Text PDF–3.3M Supplementary Material
Regulation of cAMP-dependent Protein Kinases: THE HUMAN PROTEIN KINASE X (PrKX) REVEALS THE ROLE OF THE CATALYTIC SUBUNIT αH-αI LOOP
Mandy Diskar, Hans-Michael Zenn, Alexandra Kaupisch, Melanie Kaufholz, Stefanie Brockmeyer, Daniel Sohmen, Marco Berrera, Manuela Zaccolo, Michael Boshart, Friedrich W. Herberg, Anke Prinz
J Biol Chem. 2010 November 12; 285(46): 35910–35918. Published online 2010 September 6. doi: 10.1074/jbc.M110.155150
PMCID:
PMC2975214
Abstract Full Text Supplementary Material
SAM domain-dependent activity of PfTKL3, an essential tyrosine kinase-like kinase of the human malaria parasite Plasmodiumfalciparum
Abdirahman Abdi, Sylvain Eschenlauer, Luc Reininger, Christian Doerig
Cell Mol Life Sci. 2010 October; 67(19): 3355–3369. Published online 2010 June 27. doi: 10.1007/s00018-010-0434-3
PMCID:
PMC2933843
Abstract Full Text PDF–950K Supplementary Material
Functional diversity of human protein kinase splice variants marks significant expansion of human kinome
Krishanpal Anamika, Nicolas Garnier, Narayanaswamy Srinivasan
BMC Genomics. 2009; 10: 622. Published online 2009 December 22. doi: 10.1186/1471-2164-10-622
PMCID:
PMC2805699
Abstract Full Text PDF–317K Supplementary Material
A Biochemical Genomics Screen for Substrates of Ste20p Kinase Enables the In Silico Prediction of Novel Substrates
Robert B. Annan, Anna Y. Lee, Ian D. Reid, Azin Sayad, Malcolm Whiteway, Michael Hallett, David Y. Thomas
PLoS One. 2009; 4(12): e8279. Published online 2009 December 16. doi: 10.1371/journal.pone.0008279
PMCID:
PMC2791418
Abstract Full Text PDF–2.2M Supplementary Material
Identifying and Characterizing a Novel Protein Kinase STK35L1 and Deciphering Its Orthologs and Close-Homologs in Vertebrates
Pankaj Goyal, Antje Behring, Abhishek Kumar, Wolfgang Siess
PLoS One. 2009; 4(9): e6981. Published online 2009 September 16. doi: 10.1371/journal.pone.0006981
PMCID:
PMC2737284
Abstract Full Text PDF–924K Supplementary Material
A Schistosome cAMP-Dependent Protein Kinase Catalytic Subunit Is Essential for Parasite Viability
Brett E. Swierczewski, Stephen J. Davies
PLoS Negl Trop Dis. 2009 August; 3(8): e505. Published online 2009 August 25. doi: 10.1371/journal.pntd.0000505
PMCID:
PMC2724707
Abstract Full Text PDF–518K
PfeIK1, a eukaryotic initiation factor 2α kinase of the human malaria parasite Plasmodium falciparum, regulates stress-response to amino-acid starvation
Clare Fennell, Shalon Babbitt, Ilaria Russo, Jonathan Wilkes, Lisa Ranford-Cartwright, Daniel E Goldberg, Christian Doerig
Malar J. 2009; 8: 99. Published online 2009 May 12. doi: 10.1186/1475-2875-8-99
PMCID:
PMC2684119
Abstract Full Text PDF–1.9M
Cell Kinase Activity Assay Based on Surface Enhanced Raman Spectroscopy
Zhicao Yue, Fengfeng Zhuang, Rajar Kumar, Ieong Wong, Stephen B Cronin, Yi-Hsin Liu
Spectrochim Acta A Mol Biomol Spectrosc. Author manuscript; available in PMC 2010 July 15.
Published in final edited form as: Spectrochim Acta A Mol Biomol Spectrosc. 2009 July 15; 73(2): 226–230. Published online 2009 February 14. doi: 10.1016/j.saa.2009.02.006
PMCID:
PMC2683668
Abstract Full Text PDF–1.6M
Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations
Krishanpal Anamika, Juliette Martin, Narayanaswamy Srinivasan
BMC Genomics. 2008; 9: 625. Published online 2008 December 23. doi: 10.1186/1471-2164-9-625
PMCID:
PMC2651890
Abstract Full Text PDF–2.0M Supplementary Material
A Molecular Genetics Laboratory Course Applying Bioinformatics and Cell Biology in the Context of Original Research
Cynthia J. Brame, Wendy M. Pruitt, Lucy C. Robinson
CBE Life Sci Educ. 2008 Winter; 7(4): 410–421. doi: 10.1187/cbe.08-07-0036
PMCID:
PMC2592051
Abstract Full Text PDF–738K Supplementary Material
The protein-phosphatome of the human malaria parasite Plasmodium falciparum
Jonathan M Wilkes, Christian Doerig
BMC Genomics. 2008; 9: 412. Published online 2008 September 15. doi: 10.1186/1471-2164-9-412
PMCID:
PMC2559854
Abstract Full Text PDF–3.2M Supplementary Material
Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
Nan Song, Jacob M. Joseph, George B. Davis, Dannie Durand
PLoS Comput Biol. 2008 May; 4(5): e1000063. Published online 2008 May 16. doi: 10.1371/journal.pcbi.1000063
PMCID:
PMC2377100
Abstract Full Text PDF–972K Supplementary Material
Sequential Protein Kinase C (PKC)-dependent and PKC-independent Protein Kinase D Catalytic Activation via Gq-coupled Receptors: DIFFERENTIAL REGULATION OF ACTIVATION LOOP SER744 AND SER748 PHOSPHORYLATION
Rodrigo Jacamo, James Sinnett-Smith, Osvaldo Rey, Richard T. Waldron, Enrique Rozengurt
J Biol Chem. 2008 May 9; 283(19): 12877–12887. doi: 10.1074/jbc.M800442200
PMCID:
PMC2442337
Abstract Full Text
Evidence for a Minimal Eukaryotic Phosphoproteome?
Sander H. Diks, Kaushal Parikh, Marijke van der Sijde, Jos Joore, Tita Ritsema, Maikel P. Peppelenbosch
PLoS ONE. 2007; 2(8): e777. Published online 2007 August 22. doi: 10.1371/journal.pone.0000777
PMCID:
PMC1945084
Abstract Full Text PDF–1.8M Supplementary Material
ROP18 Is a Rhoptry Kinase Controlling the Intracellular Proliferation of Toxoplasma gondii
Hiba El Hajj, Maryse Lebrun, Stefan T Arold, Henri Vial, Gilles Labesse, Jean François Dubremetz
PLoS Pathog. 2007 February; 3(2): e14. Published online 2007 February 16. doi: 10.1371/journal.ppat.0030014
PMCID:
PMC1797617
Abstract Full Text PDF–748K Supplementary Material
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
Jonathan A Eisen, Robert S Coyne, Martin Wu, Dongying Wu, Mathangi Thiagarajan, Jennifer R Wortman, Jonathan H Badger, Qinghu Ren, Paolo Amedeo, Kristie M Jones, Luke J Tallon, Arthur L Delcher, Steven L Salzberg, Joana C Silva, Brian J Haas, William H Majoros, Maryam Farzad, Jane M Carlton, Roger K Smith, Jr., Jyoti Garg, Ronald E Pearlman, Kathleen M Karrer, Lei Sun, Gerard Manning, Nels C Elde, Aaron P Turkewitz, David J Asai, David E Wilkes, Yufeng Wang, Hong Cai, Kathleen Collins, B. Andrew Stewart, Suzanne R Lee, Katarzyna Wilamowska, Zasha Weinberg, Walter L Ruzzo, Dorota Wloga, Jacek Gaertig, Joseph Frankel, Che-Chia Tsao, Martin A Gorovsky, Patrick J Keeling, Ross F Waller, Nicola J Patron, J. Michael Cherry, Nicholas A Stover, Cynthia J Krieger, Christina del Toro, Hilary F Ryder, Sondra C Williamson, Rebecca A Barbeau, Eileen P Hamilton, Eduardo Orias
PLoS Biol. 2006 September; 4(9): e286. Published online 2006 August 29. doi: 10.1371/journal.pbio.0040286
PMCID:
PMC1557398
Abstract Full Text PDF–953K Supplementary Material
Mitogen-activated protein kinases interacting kinases are autoinhibited by a reprogrammed activation segment
Ralf Jauch, Min-Kyu Cho, Stefan Jäkel, Catharina Netter, Kay Schreiter, Babette Aicher, Markus Zweckstetter, Herbert Jäckle, Markus C Wahl
EMBO J. 2006 September 6; 25(17): 4020–4032. Published online 2006 August 17. doi: 10.1038/sj.emboj.7601285
PMCID:
PMC1560367
Abstract Full Text PDF–826K
Using Substrate-Binding Variants of the cAMP-Dependent Protein Kinase to Identify Novel Targets and a Kinase Domain Important for Substrate Interactions in Saccharomyces cerevisiae
Stephen J. Deminoff, Susie C. Howard, Arelis Hester, Sarah Warner, Paul K. Herman
Genetics. 2006 August; 173(4): 1909–1917. doi: 10.1534/genetics.106.059238
PMCID:
PMC1569720
Abstract Full Text PDF–395K
Recombinant human hyaluronan synthase 3 is phosphorylated in mammalian cells
Brian J. Goentzel, Paul H. Weigel, Robert A. Steinberg
Biochem J. 2006 June 1; 396(Pt 2): 347–354. Prepublished online 2006 March 7. Published online 2006 May 15. doi: 10.1042/BJ20051782
PMCID:
PMC1462723
Abstract Full Text PDF–264K
Graph Theoretical Insights into Dollo Parsimony and Evolution of Multidomain Proteins
Teresa Przytycka, George Davis, Nan Song, Dannie Durand
J Comput Biol. Author manuscript; available in PMC 2007 March 7.
Published in final edited form as: J Comput Biol. 2006 March; 13(2): 351–363. doi: 10.1089/cmb.2006.13.351
PMCID:
PMC1815482
Abstract Full Text PDF–645K
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity
Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella
BMC Bioinformatics. 2005; 6(Suppl 4): S20. Published online 2005 December 1. doi: 10.1186/1471-2105-6-S4-S20
PMCID:
PMC1866387
Abstract Full Text PDF–1005K
Structural Evolution of the Protein Kinase–Like Superfamily
Eric D Scheeff, Philip E Bourne
PLoS Comput Biol. 2005 October; 1(5): e49. Prepublished online 2005 September 8. Published online 2005 October 21. doi: 10.1371/journal.pcbi.0010049
PMCID:
PMC1261164
Abstract Full Text PDF–1.8M Supplementary Material
Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes
Dave Bridges, Marie E Fraser, Greg BG Moorhead
BMC Bioinformatics. 2005; 6: 6. Published online 2005 January 11. doi: 10.1186/1471-2105-6-6
PMCID:
PMC545951
Abstract Full Text PDF–760K Supplementary Material
Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote
Pauline Ward, Leila Equinet, Jeremy Packer, Christian Doerig
BMC Genomics. 2004; 5: 79. Published online 2004 October 12. doi: 10.1186/1471-2164-5-79
PMCID:
PMC526369
Abstract Full Text PDF–954K Supplementary Material
SCOP database in 2004: refinements integrate structure and sequence family data
Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
Nucleic Acids Res. 2004 January 1; 32(Database issue): D226–D229. doi: 10.1093/nar/gkh039
PMCID:
PMC308773
Abstract Full Text PDF–55K
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