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Copyright © 2006 Achim Aigner. Delivery Systems for the Direct Application of siRNAs to Induce
RNA Interference (RNAi) In Vivo Department of Pharmacology and Toxicology, Philipps-University Marburg, Karl-v.-Frisch-Strasse 1, 35033 Marburg, Germany *Achim Aigner: Email: aigner/at/staff.uni-marburg.de Received January 14, 2006; Accepted February 27, 2006. This is an open access article distributed under the Creative Commons
Attribution License, which permits unrestricted use, distribution, and reproduction
in any medium, provided the original work is properly cited. This article has been cited by other articles in PMC.Abstract RNA interference (RNAi) is a powerful method for specific gene
silencing which may also lead to promising novel therapeutic
strategies. It is mediated through small interfering RNAs (siRNAs)
which sequence-specifically trigger the cleavage and subsequent
degradation of their target mRNA. One critical factor is the
ability to deliver intact siRNAs into target cells/organs in vivo.
This review highlights the mechanism of RNAi and the guidelines
for the design of optimal siRNAs. It gives an overview of studies
based on the systemic or local application of naked siRNAs or the
use of various nonviral siRNA delivery systems. One promising
avenue is the the complexation of siRNAs with the polyethylenimine
(PEI), which efficiently stabilizes siRNAs and, upon systemic
administration, leads to the delivery of the intact siRNAs into
different organs. The antitumorigenic effects of
PEI/siRNA-mediated in vivo gene-targeting of tumor-relevant
proteins like in mouse tumor xenograft models are described. INTRODUCTION Altered expression levels of certain genes play a
pivotal role in several pathological conditions. For example,
in many cancers the upregulation of
certain growth factors or growth factor receptors, or the
deregulation of intracellular signal transduction pathways,
represents key elements in the process of malignant transformation
and progression of normal cells towards tumor cells leading to
uncontrolled proliferation and decreased apoptosis. Since these
processes may result in the direct, autocrine stimulation of the
tumor cell itself as well as the paracrine stimulation of other
cells, including the stimulation of tumor-angiogenesis, many novel
therapeutic strategies focus on the reversal of this effect, that
is, the inhibition of these proteins or the downregulation of
their expression. Likewise, several other diseases have been
firmly linked to the (over-)expression of endogenous wildtype or
mutated genes. Taken together, in addition to strategies based on
the inhibition of target proteins, for example, by low molecular
weight inhibitors or inhibitory antibodies, this opens an avenue
to gene-targeting approaches aiming at decreased expression of the
respective gene. The first method to be introduced for the specific inhibition of
gene expression was the use of antisense oligonucleotides in the
late 1970s [1,
2]. Upon their introduction into a cell,
antisense ODNs are able to hybridize to their target RNA leading
to the degradation of the RNA-DNA hybrid double strands through
RNAase H, to the inhibition of the translation of the target
mRNA due to a steric or conformational obstacle for protein
translation and/or to the inhibition of correct splicing. In the
early 1980s, the discovery of ribozymes, that is, catalytically
active RNAs which are able to sequence-specifically cleave a
target mRNA, further expanded gene-targeting strategies
[3–5]. Subsequently, both methods were extensively
studied and further developed with regard to the optimization of targeting
efficacies and antisense-ODN/ribozyme delivery strategies in vitro and in vivo. Most recently, another naturally occurring biological strategy for
gene silencing has been discovered and termed RNA interference
(RNAi). Since RNAi represents a particularly powerful method for
specific gene silencing and is able to provide the relatively easy
ablation of the expression of any given target gene, it is now
commonly used as a tool in biological and biomedical research.
This includes the RNAi-mediated targeting in vitro and in vivo for
functional studies of various genes whose expression is known to
be upregulated as well as the development of novel therapeutic
approaches based on gene targeting. RNA INTERFERENCE RNAi is an evolutionarily conserved, sequence-specific,
posttranscriptional gene silencing phenomenon. It is triggered by
double-stranded RNA molecules as described first in C elegans by
Fire et al [6] who then introduced the name RNA
interference. These findings also explained earlier observations
in petunias which turned white rather than purple upon the
introduction of the “purple gene” in form of dsRNA
[7], and
on gene silencing by antisense oligonucleotides as well as by
sense oligonucleotides in C elegans [8].
Subsequent studies demonstrated that RNAi, while described under different names
(posttranscriptional gene silencing (PTGS), cosuppression,
quelling), is present in most eukaryotic organisms with the
response to dsRNA, however, being more complicated in higher organisms. RNAi relies on a multistep intracellular pathway which can be
roughly divided into two phases, that is, the initiation phase and
the effector phase. In the initiation phase, double-stranded RNA
molecules from endogenous or exogenous origin present in the cell
are processed through the cleavage activity of a ribonuclease
III-type protein [9–12] into short 21–23 nucleotide
fragments termed siRNAs. These effector siRNAs, which contain a
symmetric 2 nt overhang at the 3′-end as well as a
5′-phosphate and a 3′-hydroxy group, are then in the effector
phase incorporated into a nuclease-containing multiprotein
complex called RISC (RNA-induced silencing complex)
[13].
Several structural and biochemical studies have shed light on the
processing of double-stranded RNA and the formation of the RISC
complex (see, eg, [14] for a recent review). Through
unwinding of the siRNA duplex by an RNA helicase activity
[15], this complex becomes activated
with the single-stranded siRNA guiding the RISC complex to its complementary target RNA.
Upon the binding of the siRNA through hybridization to its target
mRNA, the RISC complex catalyses the endonucleolytical cleavage of
the mRNA strand within the target site, which, due to the
generation of unprotected RNA ends, results in the rapid
degradation of the mRNA molecule. With the RISC complex being
recovered for further binding and cleavage cycles, the whole
process translates into a net reduction of the specific mRNA
levels and hence into the decreased expression of the
corresponding gene. For an overview of the RNAi pathway, see
Figure 1
While from this mechanism it becomes obvious that siRNA molecules
complementary to the target mRNA and thus being able to serve as a guide
sequence for the RISC complex play a pivotal role in this process, they need
not be derived from long double-stranded precursor molecules. Rather,
omitting the initiation phase, they can be delivered directly into the
target cell (Figure 1 Several studies have led to the development of guidelines for the
generation of siRNAs which are optimal in terms of efficacy and
specificity [12,
16]. This includes the initial definition of
the preferable length (19–25 bp) combined with a low G/C
content in the range between 36% and 52% and the requirement
of symmetric 2 nt overhangs at the 3′-end
[16–18].
Later studies on synthetic siRNA molecules, however, revealed an
up to 100-fold higher targeting efficacy in the case of even
longer duplexes (25–30 nucleotides) which act as a substrate for
Dicer and which therefore allow the direct incorporation of the
newly produced siRNAs into the RISC complex [19].
As to be expected, intramolecular foldback structures which can result
from internal repeats or palindrome sequences decrease the numbers
of functional siRNA molecules with silencing capability
[20].
Additional silencing-enhancing criteria include an A in position 3
and a G at position 13 of the sense strand, the absence of a C or
G at position 19 and, most importantly, a U in position 10 of the
sense strand. Since nucleotides 10–11 represent the site of the
RISC-mediated cleavage of the target mRNA, this indicates that
RISC is comparable to most other endonucleases in preferentially
cleaving 3′ of U rather than any other nucleotide
[20, 21].
Furthermore, it was shown more generally that the thermodynamic
flexibility of the positions 15–19 of the sense strand
correlates with the silencing efficacy and that the presence of at
least one A/U base pair in this region improves siRNA-mediated
silencing efficacy due to a decreased internal stability of its
3′-end [20]. Still, different siRNA sequences may display differing efficacies, which
suggest additional still unknown criteria for optimal siRNA selection and
emphasize the influence of target mRNA accessibility. In fact, several
studies also correlate the siRNA efficacy with the mRNA secondary structure
[18, 22–27]. In conclusion, apart from the selection criteria defined above, the
individual screening of different siRNAs for highly efficient and specific
duplexes, or the pooling of multiple siRNAs, is the most effective
approach to increase siRNA-mediated targeting efficacy. For the design of effective siRNAs, several algorithms on publicly
accessible web sites are available (see [28]
for review). To reduce the risk of nonspecific (“off-target”)
effects of the siRNAs, a homology search of the targeting sequence against a gene database is
necessary and already incorporated in some of these web sites. Nevertheless,
it has also been shown that siRNAs may cross-react with targets of limited
sequence similarity when regions of partial sequence identity between the
target mRNA and the siRNA exist. In fact, in some cases regions comprising
of only 11–15 contiguous nucleotides of sequence identity were sufficient to
induce gene silencing [29]. The prediction of these
off-target activities is difficult so far. An additional mechanism that may lead to nonspecific effects in
vivo relies on the interferon system [30–33]
which is induced when double-stranded RNA molecules enter a cell activating
a multi-component signalling complex. This effect is particularly
true for long dsRNA molecules and essentially prevents them from
being used as inducers of RNA interference in mammalian systems.
The development of synthetic siRNAs [10,
12, 33,
34] largely
circumvents this problem since they seem to be too small. However,
some synthetic siRNAs do induce components of the interferon
system which seems to be dependent on their sequence
[31, 32,
35]
as well as, in the case of in vitro transcribed siRNAs, on the 5′
initiating triphosphate [36]. Thus,
strategies to avoid as far as possible the unwanted interferon
response upon application of siRNAs in vivo will include a design
of siRNAs without known interferon-stimulating sequences, the use
of the lowest possible siRNA dose to still achieve the desired
effect and optimized siRNA delivery methods. OLIGONUCLEOTIDE DELIVERY SYSTEMS Based on the known mechanisms of antisense technology, ribozyme-targeting
or RNAi, small oligonucleotides or plasmid-based expression vectors can be used
to specifically downregulate the expression of a given gene of interest or
of pathological relevance in vitro. In principle, this also applies to the
in vivo situation leading to novel, potentially relevant therapeutic approaches. For the delivery of therapeutic nucleic acids, viral vectors have
been used which have the advantage of high transfection efficacy
due to the inherent ability of viruses to transport genetic
material into cells. On the other hand, however, viral systems
show a limited loading capacity regarding that the genetic material are
rather difficult to produce in a larger scale and, most
importantly, pose severe safety risks due to their oncogenic
potential and their inflammatory and immunogenic effects which
prevent them from repeated administration [37–40]. In the light of these problems, concerns, and limitations, nonviral systems
have emerged as a promising alternative for gene delivery. Main requirements
are the protection of their nucleic acid “load” as well as their efficient
uptake into the target cells with subsequent release of the DNA or RNA
molecules and, if necessary, their transfer into the nucleus. Several
strategies can be distinguished, mainly lipofection and polyfection relying
on cationic lipids or polymers, respectively (see, eg,
[41–43]). The efficient protection against enzymatic or nonenzymatic
degradation is particularly important for RNA molecules including
siRNAs. In fact, while the therapeutic potential of siRNAs for the
treatment of various diseases is in principle very promising,
limitations of transfer vectors may turn out to be rate-limiting
in the development of RNAi-based therapeutic strategies. One
approach to solve this problem is the use of DNA expression
plasmids which encode palindromic hairpin loops with the desired
sequence. Upon transcription and folding of the RNA, the
double-stranded short hairpin RNAs (shRNAs) are recognized by
Dicer and cleaved into the desired siRNAs. Additionally, an in
vitro method has been described recently which is based on the
expression of shRNAs in E coli and their delivery via bacterial
invasion [44]. While
all these different DNA-based systems
offer the advantage of siRNA expression with a longer duration and
a probably higher level of gene silencing, they still rely on
(viral or nonviral) delivery of DNA molecules and again raise
safety issues in vivo. Hence, the direct delivery of siRNAs
molecules, derived from in vitro transcription or chemically
synthesized, offers advantages over DNA-based strategies and may
be preferable for in vivo therapeutic use. In the last years, a large body of studies has been published
which describe different strategies for the systemic or local
application of siRNAs in vivo. Tables 1–3
give an overview. The probably largest number of papers focuses
the use of unmodified siRNAs (Table 1) whose
administration is often performed IV by hydrodynamic transfection
(high pressure tail vein injection). While this method is widely
used and in some cases led to efficient target gene inhibition in
the liver and, to a lesser extent, in lung, spleen, pancreas, and
kidney, it may suffer from certain technical and practical
limitations at least in a therapeutical setting since it relies on
the rapid IV injection of a comparably large volume (>= 1
ml/mouse/injection, in theory equivalent to a ~ 3 l
IV bolus injection in man). Alternative strategies for the
application of naked siRNAs include various delivery routes which,
however, often provide an only local administration or rely on an
administration at least close to the target tissue or target
organ, thus restricting the number of target organs which may not
be relevant for certain diseases. It should also be noted that
several studies described here and below use rather large amounts
of siRNAs and that upon intravenous injection of siRNAs the liver
is the primary site of siRNA uptake. As an alternative approach
for the application of siRNAs in vivo, their delivery by
liposomes/cationic lipids has been described. For liposome-based
siRNA formulations, a wide variety of modes of application
allowing local or systemic delivery has been used
(Table 2). Finally, several other strategies for local
or systemic siRNA administration have been explored, including
chemical modifications of siRNA molecules, electropulsation,
polyamine, or other basic complexes, atelocollagen, virosomes, and
certain protein preparations (Table 3).
An alternative approach relies on the complexation of unmodified siRNA
molecules with a cationic polymer, polyethylenimine (PEI). POLYETHYLENIMINES: FROM DNA TRANSFECTION
TO siRNA DELIVERY IN VITRO AND IN VIVO Polyethylenimines (PEIs) are synthetic polymers available in
branched or linear forms (Figure 2
More recently, the use of polyethylenimines has been extended
towards the complexation and delivery of RNA molecules, especially
small RNA molecules like 37 nt all-RNA ribozymes
[67–69]
and siRNAs [70] (Figure 2
The ultimate goal is the application of siRNAs in vivo which has
been explored in some studies in different mouse models. Ge et al
showed that PEI-complexed siRNAs targeting conserved regions of
influenza virus genes are able to prevent and treat influenza
virus infection in mice. Upon IV injection, PEI promoted the
delivery of siRNAs into the lungs where, either given before or
after virus infection, siRNA reduced influenza virus production in
the lungs [74]. Most biological effects of the systemic application of
PEI-complexed siRNAs, however, have been determined in different
mouse tumor models and by targeting different proteins which have
been shown previously to be tumor-relevant. This includes the
epidermal growth factor receptor HER-2 (c-erbB-2/neu), the growth
factor pleiotrophin (PTN), and vascular endothelial growth factor
(VEGF) and its receptor (VEGF R2), and the fibroblast growth
factor-binding protein FGF-BP. The in vivo administration of PEI complexed, but not of naked
siRNAs, through IP or subcutaneous injection resulted in the detection of
intact siRNAs even hours after injection
(Figure 3(b) Overexpression of the HER-2 receptor has been observed in a wide variety of
human cancers and cancer cell lines. Since HER-2 displays strong cell
growth-stimulating and antiapoptotic effects especially through heterodimer
formation with other members of the EGFR family, its overexpression has been
established as a negative prognostic factor and linked to a more aggressive
malignant behaviour of tumors (eg, [75]).
Consequently, HER-2 qualifies as an attractive target molecule for antitumoral treatment
strategies including anti-HER-2 antibodies, low molecular weight inhibitors,
or HER-2-specific gene-targeting approaches. In fact, the relevance of HER-2
(over-)expression in tumor growth has been established in several in vitro
HER-2 targeting studies including the use of ribozymes
[76, 78,
79]
or siRNAs [80,
81]. It was
demonstrated that HER-2 reduction in vitro leads, among others, to the
inhibition of cell proliferation and increased apoptosis. The systemic treatment of athymic nude mice bearing subcutaneous SKOV-3
ovarian carcinoma tumor xenografts through IP injection of PEI-complexed
HER-2-specific siRNAs led to marked antitumoral effects as seen by a
significant reduction tumor growth (Figure 4
Another receptor, VEGF R2, was targeted in a study employing self-assembling
nanoparticles based on siRNAs complexed PEI which is PEGylated with an RGD
peptide ligand attached at the distal end of PEG. While the PEGylation
allows steric stabilization and reduces nonspecific interactions of the
complexes, the RGD motif provided tumor selectivity due to their ability to
target integrins expressed on activated endothelial cells in the tumor
vasculature. Upon IV administration into mice bearing subcutaneous N2A
neuroblastoma tumor xenografts, a selective tumor uptake and a VEGF R2
downregulation were observed, resulting in decreased tumor growth and tumor
angiogenesis [73]. The receptor ligand, VEGF, is a mitogenic and angiogenic growth factor
stimulating tumor growth and angiogenesis in several tumors including
prostate carcinoma. Thus, it may represent attractive target molecule for
RNAi-based gene-targeting strategies also bearing in mind the double
antitumoral effect due to reduction of tumor cell proliferation as well as
tumor angiogenesis. The subcutaneous or intraperitoneal injection of
VEGF-specific siRNAs complexed with a novel PEI obtained through
fractionation of a commercially available PEI (Werth et al, in press)
resulted in the reduction of tumor growth due to decreased VEGF expression
levels (Höbel and Aigner, unpublished results). The same was true for
PEI/siRNA-mediated targeting of FGF-BP (Dai and Aigner, unpublished
results), which has been established previously as “rate-limiting” for tumor
growth and angiogenesis in several tumors ([82,
83], see [84] for review). Finally, PEI/siRNA-mediated targeting of pleiotrophin (PTN) exerted strong
antitumoral effects. PTN is a secreted growth factor which shows mitogenic,
chemotactic, angiogenic and transforming activity
[85–93]
and which is markedly upregulated in several human tumors including cancer
of the breast, testis, prostate, pancreas, and lung as well as in melanomas,
meningiomas, neuroblastomas, and glioblastomas. The in vivo treatment of nude
mice through systemic subcutaneous or IP application of PEI-complexed PTN siRNAs
led to the delivery of intact siRNAs into subcutaneous tumor xenografts and a
significant inhibition of tumor growth. Likewise, in a clinically more
relevant orthotopic mouse glioblastoma model with U87 cells growing
intracranially, the injection of PEI-complexed PTN siRNAs into the CNS
exerted antitumoral effects. This establishes, also in a complex and
relevant orthotopic tumor model, the potential of PEI/siRNA-mediated PTN
gene targeting as a novel therapeutic option in GBM, and further extends the
modes of delivery of PEI/siRNA complexes intrathecal strategies as employed
in the therapy of glioblastomas with antisense oligonucleotides. CONCLUSION Only a few years after their discovery, siRNAs are catching up with
ribozymes and antisense oligonucleotides as efficient tools for
gene targeting in vitro and, more recently, also in vivo. This includes the
exploration of their potential as therapeutics which will lead to the
development of siRNA-based therapeutic strategies. Their ultimate success,
however, will strongly depend on the development of powerful and feasible
siRNA delivery strategies which need to address several issues including the
stability/stabilization of siRNA molecules while preserving their efficacy
and maintaining their gene-silencing activity, an efficient delivery into
the target organ(s) as well as a sufficiently long siRNA half life in the
organism and particularly in the target organ. Thus, siRNA delivery
strategies must provide siRNA protection and transfection efficacy, the
absence of toxic and nonspecific effects, they must be efficacious also
when using small amounts of siRNAs and must be applicable in various
treatment regimens and in various diseases even when this requires to
overcome biological barriers after their administration to reach their
target tissue or target organ. The research done on DNA-based gene delivery,
ribozyme-targeting, and antisense technology will facilitate this process
since it already provides a basis of established technologies. This is also
true for the complexation of siRNAs with polyethylenimine, which may
represent a promising avenue for siRNA applications in vivo. This may
eventually lead to novel therapeutic strategies. ACKNOWLEDGMENTS The work of A. Aigner is supported by the Deutsche
Forschungsgemeinschaft (AI 24/5-1)
and by the Deutsche Krebshilfe. The author would like to apologize
to the authors whose primary works have not been cited due to length
considerations. ABBREVIATIONS ABBREVIATIONS References 1. Stephenson ML, Zamecnik PC. Inhibition of Rous sarcoma viral RNA translation by a
specific oligodeoxyribonucleotide. Proceedings of the National Academy of Sciences of
the United States of America. 1978;75(1):285–288. [PubMed] 2. Zamecnik PC, Stephenson ML. Inhibition of Rous sarcoma virus replication and cell
transformation by a specific oligodeoxynucleotide. Proceedings of the National Academy of Sciences of the
United States of America. 1978;75(1):280–284. [PubMed] 3. Cech TR, Zaug AJ, Grabowski PJ. In vitro splicing of the ribosomal RNA precursor of
Tetrahymena: involvement of a guanosine nucleotide in the
excision of the intervening sequence. Cell. 1981;27(3 pt 2):487–496. [PubMed] 4. Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE, Cech TR. Self-splicing RNA: autoexcision and autocyclization of the
ribosomal RNA intervening sequence of Tetrahymena. Cell. 1982;31(1):147–157. [PubMed] 5. Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. The RNA moiety of ribonuclease P is the catalytic subunit
of the enzyme. Cell. 1983;35(3 pt 2):849–857. [PubMed] 6. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded
RNA in caenorhabditis elegans. Nature. 1998;391(6669):806–811. [PubMed] 7. Jorgensen R. Altered gene expression in plants due to trans interactions
between homologous genes. Trends in Biotechnology. 1990;8(12):340–344. [PubMed] 8. Guo S, Kemphues KJ. par-1, a gene required for establishing polarity in C.
elegans embryos, encodes a putative Ser/Thr kinase that is
asymmetrically distributed. Cell. 1995;81(4):611–620. [PubMed] 9. Hamilton AJ, Baulcombe DC. A species of small antisense RNA in posttranscriptional
gene silencing in plants. Science. 1999;286(5441):950–952. [PubMed] 10. Zamore PD, Tuschl T, Sharp PA, Bartel DP. RNAi: doublestranded RNA directs the ATP-dependent cleavage
of mRNA at 21 to 23 nucleotide intervals. Cell. 2000;101(1):25–33. [PubMed] 11. Bernstein E, Caudy AA, Hammond SM, Hannon GJ. Role for a bidentate ribonuclease in the initiation step of
RNA interference. Nature. 2001;409(6818):363–366. [PubMed] 12. Elbashir SM, Lendeckel W, Tuschl T. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes and Development. 2001;15(2):188–200. [PubMed] 13. Hammond SM, Bernstein E, Beach D, Hannon GJ. An RNAdirected nuclease mediates post-transcriptional gene
silencing in Drosophila cells. Nature. 2000;404(6775):293–296. [PubMed] 14. Collins RE, Cheng X. Structural domains in RNAi. FEBS Letters. 2005;579(26):5841–5849. [PubMed] 15. Nykänen A, Haley B, Zamore PD. ATP requirements and small interfering RNA structure in the
RNA interference pathway. Cell. 2001;107(3):309–321. [PubMed] 16. Elbashir SM, Harborth J, Weber K, Tuschl T. Analysis of gene function in somatic mammalian cells using
small interfering RNAs. Methods. 2002;26(2):199–213. [PubMed] 17. Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W, Tuschl T. Functional anatomy of siRNAs for mediating efficient
RNAi in Drosophila melanogaster embryo lysate. The EMBO Journal. 2001;20(23):6877–6888. [PubMed] 18. Holen T, Amarzguioui M, Wiiger MT, Babaie E, Prydz H. Positional effects of short interfering RNAs targeting
the human coagulation trigger Tissue Factor. Nucleic Acids Research. 2002;30(8):1757–1766. [PubMed] 19. Kim D-H, Behlke MA, Rose SD, Chang M-S, Choi S, Rossi JJ. Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy. Nature Biotechnology. 2005;23(2):222–226. 20. Reynolds A, Leake D, Boese Q, Scaringe S, Marshall WS, Khvorova A. Rational siRNA design for RNA interference. Nature Biotechnology. 2004;22(3):326–330. 21. Donis-Keller H. Site specific enzymatic cleavage of RNA. Nucleic Acids Research. 1979;7(1):179–192. [PubMed] 22. Bohula EA, Salisbury AJ, Sohail M, et al. The efficacy of small interfering RNAs targeted to the
type 1 insulin-like growth factor receptor (IGF1R) is
influenced by secondary structure in the IGF1R transcript. Journal of Biological Chemistry. 2003;278(18):15991–15997. [PubMed] 23. Lee NS, Dohjima T, Bauer G, et al. Expression of small interfering RNAs targeted against
HIV-1 rev transcripts in human cells. Nature Biotechnology. 2002;20(5):500–505. 24. Ding Y, Lawrence CE. A statistical sampling algorithm for RNA secondary structure prediction. Nucleic Acids Research. 2003;31(24):7280–7301. [PubMed] 25. Vickers TA, Koo S, Bennett CF, Crooke ST, Dean NM, Baker BF. Efficient reduction of target RNAs by small interfering RNA
and RNase H-dependent antisense agents. A comparative analysis. Journal of Biological Chemistry. 2003;278(9):7108–7118. [PubMed] 26. Xu Y, Zhang H-Y, Thormeyer D, et al. Effective small interfering RNAs and phosphorothioate
antisense DNAs have different preferences for target sites
in the luciferase mRNAs. Biochemical and Biophysical Research Communications. 2003;306(3):712–717. [PubMed] 27. Kretschmer-Kazemi Far R, Sczakiel G. The activity of siRNA in mammalian cells is related to
structural target accessibility: a comparison with antisense
oligonucleotides. Nucleic Acids Research. 2003;31(15):4417–4424. [PubMed] 28. Sandy P, Ventura A, Jacks T. Mammalian RNAi: a practical guide. BioTechniques. 2005;39(2):215–224. [PubMed] 29. Jackson AL, Bartz SR, Schelter J, et al. Expression profiling reveals off-target gene regulation by RNAi. Nature Biotechnology. 2003;21(6):635–637. 30. Hornung V, Guenthner-Biller M, Bourquin C, et al. Sequence-specific potent induction of IFN-alpha by short
interfering RNA in plasmacytoid dendritic cells through TLR7. Nature Medicine. 2005;11(3):263–270. 31. Sledz CA, Holko M, De Veer MJ, Silverman RH, Williams BR-G. Activation of the interferon system by short-interfering RNAs. Nature Cell Biology. 2003;5(9):834–839. 32. Bridge AJ, Pebernard S, Ducraux A, Nicoulaz A-L, Iggo R. Induction of an interferon response by RNAi vectors in
mammalian cells. Nature Genetics. 2003;34(3):263–264. [PubMed] 33. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. Duplexes of 21-nucleotide RNAs mediate RNA interference in
cultured mammalian cells. Nature. 2001;411(6836):494–498. [PubMed] 34. Caplen NJ, Parrish S, Imani F, Fire A, Morgan RA. Specific inhibition of gene expression by small
double-stranded RNAs in invertebrate and vertebrate systems. Proceedings of the National Academy of Sciences
of the United States of America. 2001;98(17):9742–9747. [PubMed] 35. Judge AD, Sood V, Shaw JR, Fang D, McClintock K, MacLachlan I. Sequence-dependent stimulation of the mammalian innate
immune response by synthetic siRNA. Nature Biotechnology. 2005;23(4):457–462. 36. Kim D-H, Longo M, Han Y, Lundberg P, Cantin E, Rossi JJ. Interferon induction by siRNAs and ssRNAs synthesized by
phage polymerase. Nature Biotechnology. 2004;22(3):321–325. 37. Lehrman S. Virus treatment questioned after gene therapy death. Nature. 1999;401(6753):517–518. [PubMed] 38. Liu Q, Muruve DA. Molecular basis of the inflammatory response to adenovirus vectors. Gene Therapy. 2003;10(11):935–940. [PubMed] 39. Sun JY, Anand-Jawa V, Chatterjee S, Wong KK Jr. Immune responses to adeno-associated virus and its
recombinant vectors. Gene Therapy. 2003;10(11):964–976. [PubMed] 40. Donahue RE, Kessler SW, Bodine D, et al. Helper virus induced T cell lymphoma in nonhuman primates
after retroviral mediated gene transfer. Journal of Experimental Medicine. 1992;176(4):1125–1135. [PubMed] 41. Merdan T, Kopeček J, Kissel T. Prospects for cationic polymers in gene and oligonucleotide
therapy against cancer. Advanced Drug Delivery Reviews. 2002;54(5):715–758. [PubMed] 42. Duzgunes N, De Ilarduya CT, Simoes S, Zhdanov RI, Konopka K, Pedroso de Lima MC. Cationic liposomes for gene delivery: novel cationic lipids and
enhancement by proteins and peptides. Current Medicinal Chemistry. 2003;10(14):1213–1220. [PubMed] 43. Liu D, Ren T, Gao X. Cationic transfection lipids. Current Medicinal Chemistry. 2003;10(14):1307–1315. [PubMed] 44. Zhao H-F, L'Abbé D, Jolicoeur N, et al. High-throughput screening of effective siRNAs from RNAi
libraries delivered via bacterial invasion. Nature Methods. 2005;2(12):967–973. [PubMed] 45. Godbey WT, Wu KK, Mikos GA. Size matters: molecular weight affects the efficiency
of poly(ethylenimine) as a gene delivery vehicle. Journal of Biomedical Materials Research. 1999;45(3):268–275. [PubMed] 46. Tang MX, Szoka FC. The influence of polymer structure on the interactions
of cationic polymers with DNA and morphology of the
resulting complexes. Gene Therapy. 1997;4(8):823–832. [PubMed] 47. Bieber T, Elsässer H-P. Preparation of a low molecular weight polyethylenimine
for efficient cell transfection. BioTechniques. 2001;30(1):74–77, 80–81. [PubMed] 48. Boussif O, Lezoualc'h F, Zanta MA, et al. A versatile vector for gene and oligonucleotide transfer
into cells in culture and in vivo: polyethylenimine. Proceedings of the National Academy of Sciences of
the United States of America. 1995;92(16):7297–7301. [PubMed] 49. Behr JP. The proton sponge: a trick to enter cells the viruses
did not exploit. Chimia. 1997;51:34–36. 50. Neu M, Fischer D, Kissel T. Recent advances in rational gene transfer vector design
based on poly(ethylene imine) and its derivatives. Journal of Gene Medicine. 2005;7(8):992–1009. [PubMed] 51. Kichler A. Gene transfer with modified polyethylenimines. Journal of Gene Medicine. 2004;6(suppl 1):S3–S10. [PubMed] 52. Wagner E, Kircheis R, Walker GF. Targeted nucleic acid delivery into tumors: new avenues
for cancer therapy. Biomedicine and Pharmacotherapy. 2004;58(3):152–161. 53. Marschall P, Malik N, Larin Z. Transfer of YACs up to 2.3 Mb intact into human cells
with polyethylenimine. Gene Therapy. 1999;6(9):1634–1637. [PubMed] 54. Abdallah B, Hassan A, Benoist C, Goula D, Behr JP, Demeneix BA. A powerful nonviral vector for in vivo gene transfer
into the adult mammalian brain: polyethylenimine. Human Gene Therapy. 1996;7(16):1947–1954. [PubMed] 55. Boletta A, Benigni A, Lutz J, Remuzzi G, Soria MR, Monaco L. Nonviral gene delivery to the rat kidney with
polyethylenimine. Human Gene Therapy. 1997;8(10):1243–1251. [PubMed] 56. Goula D, Benoist C, Mantero S, Merlo G, Levi G, Demeneix BA. Polyethylenimine-based intravenous delivery of transgenes
to mouse lung. Gene Therapy. 1998;5(9):1291–1295. [PubMed] 57. Oh Y-K, Suh D, Kim JM, Choi H-G, Shin K, Ko JJ. Polyethylenimine-mediated cellular uptake, nucleus
trafficking and expression of cytokine plasmid DNA. Gene Therapy. 2002;9(23):1627–1632. [PubMed] 58. Ferrari S, Pettenazzo A, Garbati N, Zacchello F, Behr J-P, Scarpa M. Polyethylenimine shows properties of interest for cystic
fibrosis gene therapy. Biochimica et Biophysica Acta. 1999;1447(2-3):219–225. [PubMed] 59. Godbey WT, Barry MA, Saggau P, Wu KK, Mikos AG. Poly(ethylenimine)-mediated transfection: a new paradigm
for gene delivery. Journal of Biomedical Materials Research. 2000;51(3):321–328. [PubMed] 60. Fischer D, Bieber T, Li Y, Elsässer H-P, Kissel T. A novel nonviral vector for DNA delivery based on low
molecular weight, branched polyethylenimine: effect of
molecular weight on transfection efficiency and cytotoxicity. Pharmaceutical Research. 1999;16(8):1273–1279. [PubMed] 61. Fischer D, Bhattacharya R, Osburg B, Bickel U. Inhibition of monocyte adhesion on brain-derived endothelial
cells by NFkappaB decoy/polyethylenimine complexes. Journal of Gene Medicine. 2005;7(8):1063–1076. [PubMed] 62. Fischer D, Li Y, Ahlemeyer B, Krieglstein J, Kissel T. In vitro cytotoxicity testing of polycations: influence of
polymer structure on cell viability and hemolysis. Biomaterials. 2003;24(7):1121–1131. [PubMed] 63. Kunath K, von Harpe A, Fischer D, et al. Low-molecular-weight polyethylenimine as a non-viral vector
for DNA delivery: comparison of physicochemical properties,
transfection efficiency and in vivo distribution with
high-molecular-weight polyethylenimine. Journal of Controlled Release. 2003;89(1):113–125. [PubMed] 64. Ogris M, Steinlein P, Kursa M, Mechtler K, Kircheis R, Wagner E. The size of DNA/transferrin-PEI complexes is an important
factor for gene expression in cultured cells. Gene Therapy. 1998;5(10):1425–1433. [PubMed] 65. Wightman L, Kircheis R, Rössler V, et al. Different behavior of branched and linear polyethylenimine
for gene delivery in vitro and in vivo. Journal of Gene Medicine. 2001;3(4):362–372. [PubMed] 66. Lungwitz U, Breunig M, Blunk T, Göpferich A. Polyethylenimine-based non-viral gene delivery systems. European Journal of Pharmaceutics and Biopharmaceutics. 2005;60(2):247–266. [PubMed] 67. Eigner A, Fischer D, Merdan T, Brus C, Kissel T, Czubayko F. Delivery of unmodified bioactive ribozymes by an RNA
stabilizing polyethylenimine LMW PEI efficiently down
regulates gene expression. Gene Therapy. 2002;9(24):1700–1707. [PubMed] 68. Brus C, Petersen H, Aigner A, Czubayco F, Kissel T. Physicochemical and biological characterization of
polyethylenimine-graft- poly(ethylene glycol)
block copolymers as a delivery system for oligonucleotides
and ribozymes. Bioconjugate Chemistry. 2004;15(4):677–684. [PubMed] 69. Brus C, Petersen H, Aigner A, Czubayko F, Kissel T. Efficiency of polyethylenimines and
polyethylenimine-graft-poly (ethylene glycol) block
copolymers to protect oligonucleotides against enzymatic
degradation. European Journal of Pharmaceutics and
Biopharmaceutics. 2004;57(3):427–430. [PubMed] 70. Urban-Klein B, Werth S, Abuharbeid S, Czubayko F, Aigner A. RNAi-mediated gene-targeting through systemic application
of polyethylenimine (PEI)-complexed siRNA in vivo. Gene Therapy. 2005;12(5):461–466. [PubMed] 71. Hassani Z, Lemkine GF, Erbacher P, et al. Lipid-mediated siRNA delivery down-regulates exogenous gene
expression in the mouse brain at picomolar levels. Journal of Gene Medicine. 2005;7(2):198–207. [PubMed] 72. Brus C, Kleemann E, Aigner A, Czubayko F, Kissel T. Stabilization of oligonucleotide-polyethylenimine complexes
by freeze-drying: physicochemical and biological
characterization. Journal of Controlled Release. 2004;95(1):119–131. [PubMed] 73. Schiffelers RM, Ansari A, Xu J, et al. Cancer siRNA therapy by tumor selective delivery with
ligand-targeted sterically stabilized nanoparticle. Nucleic Acids Research. 2004;32(19):e149. [PubMed] 74. Ge Q, Filip L, Bai A, Nguyen T, Eisen HN, Chen J. Inhibition of influenza virus production in virus-infected
mice by RNA interference. Proceedings of the National Academy of Sciences
of the United States of America. 2004;101(23):8676–8681. [PubMed] 75. Slamon DJ, Godolphin W, Jones LA, et al. Studies of the HER-2/neu proto-oncogene in human breast and
ovarian cancer. Science. 1989;244(4905):707–712. [PubMed] 76. Juhl H, Downing SG, Wellstein A, Czubayko F. HER-2/neu is rate-limiting for ovarian cancer growth.
Conditional depletion of HER-2/neu by ribozyme targeting. Journal of Biological Chemistry. 1997;272(47):29482–29486. [PubMed] 77. Thybusch-Bernhardt A, Aigner A, Beckmann S, Czubayko F, Juhl H. Ribozyme targeting of HER-2 inhibits
pancreatic cancer cell growth in vivo. European Journal of Cancer. 2001;37(13):1688–1694. [PubMed] 78. Suzuki T, Anderegg B, Ohkawa T, et al. Adenovirus-mediated ribozyme targeting of HER-2/neu
inhibits in vivo growth of breast cancer cells. Gene Therapy. 2000;7(3):241–248. [PubMed] 79. Czubayko F, Downing SG, Hsieh SS, et al. Adenovirus-mediated transduction of ribozymes abrogates
HER-2/neu and pleiotrophin expression and inhibits tumor
cell proliferation. Gene Therapy. 1997;4(9):943–949. [PubMed] 80. Choudhury A, Charo J, Parapuram SK, et al. Small interfering RNA (siRNA) inhibits the expression of
the Her2/Neu gene, upregulates HLA class I and induces
apoptosis of Her2/Neu positive tumor cell lines. International Journal of Cancer. 2004;108(1):71–77. 81. Yang G, Cai KQ, Thompson-Lanza JA, Bast RC Jr, Liu J. Inhibition of breast and ovarian tumor growth through
multiple signaling pathways by using retrovirus-mediated
small interfering RNA against Her-2/neu gene expression. Journal of Biological Chemistry. 2004;279(6):4339–4345. [PubMed] 82. Czubayko F, Liaudet-Coopman EDE, Aigner A, Tuveson AT, Berchem G, Wellstein A. A secreted FGF-binding protein can serve as the angiogenic
switch in human cancer. Nature Medicine. 1997;3(10):1137–1140. 83. Aigner A, Renneberg H, Bojunga J, Apel J, Nelson PS, Czubayko F. Ribozyme-targeting of a secreted FGF-binding protein
(FGF-BP) inhibits proliferation of prostate cancer cells in
vitro and in vivo. Oncogene. 2002;21(37):5733–5742. [PubMed] 84. Abuharbeid S, Czubayko F, Aigner A. The fibroblast growth factor-binding protein FGF-BP. to appear in The International Journal of Biochemistry & Cell
Biology. 85. Fang WJ, Hartmann N, Chow D, Riegel AT, Wellstein A. Pleiotrophin stimulates fibroblasts and endothelial and
epithelial cells and is expressed in human cancer. Journal of Biological Chemistry. 1992;267(36):25889–25897. [PubMed] 86. Bowden ET, Stoica GE, Wellstein A. Anti-apoptotic signaling of pleiotrophin through its receptor,
anaplastic lymphoma kinase. Journal of Biological Chemistry. 2002;277(39):35862–35868. [PubMed] 87. Wellstein A, Fang WJ, Khatri A, et al. A heparin-binding growth factor secreted from breast cancer
cells homologous to a developmentally regulated cytokine. Journal of Biological Chemistry. 1992;267(4):2582–2587. [PubMed] 88. Milner PG, Li YS, Hoffman RM, Kodner CM, Siegel NR, Deuel TF. A novel 17 kD heparin-binding growth factor (HBGF-8) in
bovine uterus: purification and N-terminal amino acid sequence. Biochemical and Biophysical Research Communications. 1989;165(3):1096–1103. [PubMed] 89. Zhang N, Zhong R, Wang ZY, Deuel TF. Human breast cancer growth inhibited in vivo by a dominant
negative pleiotrophin mutant. Journal of Biological Chemistry. 1997;272(27):16733–16736. [PubMed] 90. Czubayko F, Schulte AM, Berchem GJ, Wellstein A. Melanoma angiogenesis and metastasis modulated by ribozyme
targeting of the secreted growth factor pleiotrophin. Proceedings of the National Academy of Sciences of the
United States of America. 1996;93(25):14753–14758. [PubMed] 91. Czubayko F, Riegel AT, Wellstein A. Ribozyme-targeting elucidates a direct role of pleiotrophin
in tumor growth. Journal of Biological Chemistry. 1994;269(33):21358–21363. [PubMed] 92. Schulte AM, Lai S, Kurtz A, Czubayko F, Riegel AT, Wellstein A. Human trophoblast and choriocarcinoma expression of the
growth factor pleiotrophin attributable to germ line
insertion of an endogenous retrovirus. Proceedings of the National Academy of Sciences
of the United States of America. 1996;93(25):14759–14764. [PubMed] 93. Choudhuri R, Zhang H-T, Donnini S, Ziche M, Bicknell R. An angiogenic role for the neurokines midkine and
pleiotrophin in tumorigenesis. Cancer Research. 1997;57(9):1814–1819. [PubMed] 94. Zender L, Hütker S, Liedtke C, et al. Caspase 8 small interfering RNA prevents acute liver failure in mice. Proceedings of the National Academy of
Sciences of the United States of America. 2003;100(13):7797–7802. [PubMed] 95. Giladi H, Ketzinel-Gilad M, Rivkin L, Felig Y, Nussbaum O, Galun E. Small interfering RNA inhibits hepatitis B virus replication in mice. Molecular Therapy. 2003;8(5):769–776. [PubMed] 96. Klein C, Bock CT, Wedemeyer H, et al. Inhibition of hepatitis B virus replication in vivo by
nucleoside analogues and siRNA. Gastroenterology. 2003;125(1):9–18. [PubMed] 97. Lewis DL, Hagstrom JE, Loomis AG, Wolff JA, Herweijer H. Efficient delivery of siRNA for inhibition of gene
expression in postnatal mice. Nature Genetics. 2002;32(1):107–108. [PubMed] 98. Song E, Lee S-K, Wang J, et al. RNA interference targeting Fas protects mice from fulminant hepatitis. Nature Medicine. 2003;9(3):347–351. 99. Heidel JD, Hu S, Liu XF, Triche TJ, Davis ME. Lack of interferon response in animals to naked siRNAs. Nature Biotechnology. 2004;22(12):1579–1582. 100. Matsui Y, Kobayashi N, Nishikawa M, Takakura Y. Sequence-specific suppression of mdr1a/1b expression in
mice via RNA interference. Pharmaceutical Research. 2005;22(12):2091–2098. [PubMed] 101. Contreras JL, Vilatoba M, Eckstein C, Bilbao G, Anthony Thompson J, Eckhoff DE. Caspase-8 and caspase-3 small interfering RNA
decreases ischemia/reperfusion injury to the liver in mice. Surgery. 2004;136(2):390–400. [PubMed] 102. Sato Y, Ajiki T, Inoue S, et al. Gene silencing in rat-liver and limb grafts by rapid
injection of small interference RNA. Transplantation. 2005;79(2):240–243. [PubMed] 103. Liang Z, Yoon Y, Votaw J, Goodman MM, Williams L, Shim H. Silencing of CXCR4 blocks breast cancer metastasis. Cancer Research. 2005;65(3):967–971. [PubMed] 104. Merl S, Michaelis C, Jaschke B, Vorpahl M, Seidl S, Wessely R. Targeting 2A protease by RNA interference attenuates
coxsackieviral cytopathogenicity and promotes survival
in highly susceptible mice. Circulation. 2005;111(13):1583–1592. [PubMed] 105. Duxbury MS, Matros E, Ito H, Zinner MJ, Ashley SW, Whang EE. Systemic siRNA-mediated gene silencing: a new approach to
targeted therapy of cancer. Annals of Surgery. 2004;240(4):667–676. [PubMed] 106. Duxbury MS, Ito H, Zinner MJ, Ashley SW, Whang EE. EphA2: a determinant of malignant cellular behavior and a
potential therapeutic target in pancreatic adenocarcinoma. Oncogene. 2004;23(7):1448–1456. [PubMed] 107. Duxbury MS, Ito H, Benoit E, Zinner MJ, Ashley SW, Whang EE. RNA interference targeting focal adhesion kinase enhances
pancreatic adenocarcinoma gemcitabine chemosensitivity. Biochemical and Biophysical Research Communications. 2003;311(3):786–792. [PubMed] 108. Hamar P, Song E, Kökeny G, Chen A, Ouyang N, Lieberman J. Small interfering RNA targeting Fas protects mice against
renal ischemia-reperfusion injury. Proceedings of the National Academy of Sciences of the
United States of America. 2004;101(41):14883–14888. [PubMed] 109. Tompkins SM, Lo C-Y, Tumpey TM, Epstein SL. Protection against lethal influenza virus challenge by RNA
interference in vivo. Proceedings of the National
Academy of Sciences of the United States of America. 2004;101(23):8682–8686. [PubMed] 110. Bradley SP, Rastellini C, Da Costa MA, et al. Gene silencing in the endocrine pancreas mediated by
short-interfering RNA. Pancreas. 2005;31(4):373–379. [PubMed] 111. Hino T, Yokota T, Ito S, et al. In vivo delivery of small interfering RNA targeting brain
capillary endothelial cells. Biochemical and Biophysical Research Communications. 2006;340(1):263–267. [PubMed] 112. Filleur S, Courtin A, Ait-Si-Ali S, et al. SiRNA-mediated inhibition of vascular endothelial growth
factor severely limits tumor resistance to antiangiogenic
thrombospondin-1 and slows tumor vascularization and growth. Cancer Research. 2003;63(14):3919–3922. [PubMed] 113. Ocker M, Neureiter D, Lueders M, et al. Variants of bcl-2 specific siRNA for silencing antiapoptotic
bcl-2 in pancreatic cancer. Gut. 2005;54(9):1298–1308. [PubMed] 114. Lingor P, Koeberle P, Kügler S, Bähr M. Down-regulation of apoptosis mediators by RNAi inhibits
axotomy-induced retinal ganglion cell death in vivo. Brain. 2005;128(3):550–558. [PubMed] 115. Lomas-Neira JL, Chung C-S, Wesche DE, Perl M, Ayala A. In vivo gene silencing (with siRNA) of pulmonary expression
of MIP-2 versus KC results in divergent effects on
hemorrhage-induced, neutrophil-mediated septic acute lung injury. Journal of Leukocyte Biology. 2005;77(6):846–853. [PubMed] 116. McCaffrey AP, Meuse L, Pham TT, Conklin DS, Hannon GJ, Kay MA. RNA interference in adult mice. Nature. 2002;418(6893):38–39. [PubMed] 117. Reich SJ, Fosnot J, Kuroki A, et al. Small interfering RNA (siRNA) targeting VEGF effectively
inhibits ocular neovascularization in mouse model. Molecular Vision. 2003;9:210–216. [PubMed] 118. Schiffelers RM, Xu J, Storm G, Woodle MC, Scaria PV. Effects of treatment with small interfering RNA on joint
inflammation in mice with collagen-induced arthritis. Arthritis and Rheumatism. 2005;52(4):1314–1318. [PubMed] 119. Kim TW, Lee J-H, He L, et al. Modification of professional antigen-presenting cells with
small interfering RNA in vivo to enhance cancer vaccine potency. Cancer Research. 2005;65(1):309–316. [PubMed] 120. Bitko V, Musiyenko A, Shulyayeva O, Barik S. Inhibition of respiratory viruses by nasally administered siRNA. Nature Medicine. 2005;11(1):50–55. 121. Zhang X, Shan P, Jiang D, et al. Small interfering RNA targeting heme oxygenase-1 enhances
ischemia-reperfusion-induced lung apoptosis. Journal of Biological Chemistry. 2004;279(11):10677–10684. [PubMed] 122. Li B-J, Tang Q, Cheng D, et al. Using siRNA in prophylactic and therapeutic regimens against
SARS coronavirus in Rhesus macaque. Nature Medicine. 2005;11(9):944–951. 123. Bradley SP, Kowalik TF, Rastellini C, et al. Successful incorporation of short-interfering RNA into
islet cells by in situ perfusion. Transplantation Proceedings. 2005;37(1):233–236. [PubMed] 124. Pillé J-Y, Denoyelle C, Varet J, et al. Anti-RhoA and anti-RhoC siRNAs inhibit the proliferation
and invasiveness of MDA-MB-231 breast cancer cells in vitro
and in vivo. Molecular Therapy. 2005;11(2):267–274. [PubMed] 125. Aharinejad S, Paulus P, Sioud M, et al. Colony-stimulating factor-1 blockade by antisense
oligonucleotides and small interfering RNAs suppresses
growth of human mammary tumor xenografts in mice. Cancer Research. 2004;64(15):5378–5384. [PubMed] 126. Dorn G, Patel S, Wotherspoon G, et al. siRNA relieves chronic neuropathic pain. Nucleic Acids Research. 2004;32(5):e49. [PubMed] 127. Takabatake Y, Isaka Y, Mizui M, et al. Exploring RNA inteference as a therapeutic strategy
for renal disease. Gene Therapy. 2005;12(12):965–973. [PubMed] 128. Perl M, Chung C-S, Lomas-Neira J, et al. Silencing of Fas, but not caspase-8, in lung epithelial
cells ameliorates pulmonary apoptosis, inflammation, and
neutrophil influx after hemorrhagic shock and sepsis. American Journal of Pathology. 2005;167(6):1545–1559. [PubMed] 129. Makimura H, Mizuno TM, Mastaitis JW, Agami R, Mobbs CV. Reducing hypothalamic AGRP by RNA interference increases
metabolic rate and decreases body weight without influencing food intake. BMC Neuroscience. 2002;3(1):18. [PubMed] 130. Thakker DR, Natt F, Hüsken D, et al. Neurochemical and behavioral consequences of widespread
gene knockdown in the adult mouse brain by using nonviral
RNA interference. Proceedings of the National Academy
of Sciences of the United States of America. 2004;101(49):17270–17275. [PubMed] 131. Thakker DR, Natt F, Hüsken D, et al. siRNA-mediated knockdown of the serotonin transporter in the
adult mouse brain. Molecular Psychiatry. 2005;10(8):782–789. [PubMed] 132. Herard AS, Besret L, Dubois A, et al. siRNA targeted against amyloid precursor protein impairs
synaptic activity in vivo. to appear in Neurobiology of Aging. 133. Kim B, Tang Q, Biswas PS, et al. Inhibition of ocular angiogenesis by siRNA targeting
vascular endothelial growth factor pathway genes:
Therapeutic strategy for herpetic stromal keratitis. American Journal of Pathology. 2004;165(6):2177–2185. [PubMed] 134. Nakamura H, Siddiqui SS, Shen X, et al. RNA interference targeting transforming growth factor-beta
type II receptor suppresses ocular inflammation and fibrosis. Molecular Vision. 2004;10:703–711. [PubMed] 135. Yano J, Hirabayashi K, Nakagawa S-I, et al. Antitumor activity of small interfering RNA/cationic liposome
complex in mouse models of cancer. Clinical Cancer Research. 2004;10(22):7721–7726. [PubMed] 136. Hassan A, Tian Y, Zheng W, Ji H, Sandberg K, Verbalis JG. Small interfering RNA-mediated functional silencing of
vasopressin V 2 receptors in the mouse kidney. Physiological Genomics. 2005;21(3):382–388. [PubMed] 137. Landen CN Jr, Chavez-Reyes A, Bucana C, et al. Therapeutic EphA2 gene targeting in vivo using neutral
liposomal small interfering RNA delivery. Cancer Research. 2005;65(15):6910–6918. [PubMed] 138. Miyawaki-Shimizu K, Predescu D, Shimizu J, Broman M, Predescu S, Malik AB. siRNA-induced caveolin-1 knockdown in mice increases
lung vascular permeability via the junctional pathway. American Journal of Physiology. Lung Cellular and
Molecular Physiology. 2006;290(2):L405–L413. [PubMed] 139. Sioud M, Sørensen DR. Cationic liposome-mediated delivery of siRNAs in adult mice. Biochemical and Biophysical Research Communications. 2003;312(4):1220–1225. [PubMed] 140. Flynn MA, Casey DG, Todryk SM, Mahon BP. Efficient delivery of small interfering RNA for inhibition
of IL-12p40 expression in vivo. Journal of Inflammation. 2004;1(1):4. [PubMed] 141. Verma UN, Surabhi RM, Schmaltieg A, Becerra C, Gaynor RB. Small interfering RNAs directed against beta-catenin inhibit
the in vitro and in vivo growth of colon cancer cells. Clinical Cancer Research. 2003;9(4):1291–1300. [PubMed] 142. Sørensen DR, Leirdal M, Sioud M. Gene silencing by systemic delivery of synthetic siRNAs in
adult mice. Journal of Molecular Biology. 2003;327(4):761–766. [PubMed] 143. Nogawa M, Yuasa T, Kimura S, et al. Intravesical administration of small interfering RNA
targeting PLK-1 successfully prevents the growth of bladder
cancer. Journal of Clinical Investigation. 2005;115(4):978–985. [PubMed] 144. Maeda Y, Fukushima K, Nishizaki K, Smith RJH. In vitro and in vivo suppression of GJB2 expression by RNA
interference. Human Molecular Genetics. 2005;14(12):1641–1650. [PubMed] 145. Fukuyama S, Yoshino I, Yamaguchi M, et al. Blockage of the macrophage migration inhibitory factor
expression by short interference RNA inhibited the rejection
of an allogeneic tracheal graft. Transplant International. 2005;18(10):1203–1209. [PubMed] 146. Bollerot K, Sugiyama D, Escriou V, et al. Widespread lipoplex-mediated gene transfer to vascular
endothelial cells and hemangioblasts in the vertebrate embryo. Developmental Dynamics. 2006;235(1):105–114. [PubMed] 147. Pal A, Ahmad A, Khan S, et al. Systemic delivery of RafsiRNA using cationic cardiolipin
liposomes silences Raf-1 expression and inhibits tumor
growth in xenograft model of human prostate cancer. International Journal of Oncology. 2005;26(4):1087–1091. [PubMed] 148. Chien P-Y, Wang J, Carbonaro D, et al. Novel cationic cardiolipin analogue-based liposome for
efficient DNA and small interfering RNA delivery in vitro
and in vivo. Cancer Gene Therapy. 2005;12(3):321–328. [PubMed] 149. Luo MC, Zhang DQ, Ma SW, et al. An efficient intrathecal delivery of small interfering RNA
to the spinal cord and peripheral neurons. Molecular Pain. 2005;1:29. [PubMed] 150. Bertrand J-R, Pottier M, Vekris A, Opolon P, Maksimenko A, Malvya C. Comparison of antisense oligonucleotides and siRNAs in cell
culture and in vivo. Biochemical and Biophysical Research Communications. 2002;296(4):1000–1004. [PubMed] 151. Palliser D, Chowdhury D, Wang Q-Y, et al. An siRNA-based microbicide protects mice from lethal herpes
simplex virus 2 infection. Nature. 2006;439(7072):89–94. [PubMed] 152. Soutschek J, Akinc A, Bramlage B, et al. Therapeutic silencing of an endogenous gene by systemic
administration of modified siRNAs. Nature. 2004;432(7014):173–178. [PubMed] 153. Morrissey DV, Lockridge JA, Shaw L, et al. Potent and persistent in vivo anti-HBV activity of
chemically modified siRNAs. Nature Biotechnology. 2005;23(8):1002–1007. 154. Golzio M, Mazzolini L, Moller P, Rols MP, Teissié J. Inhibition of gene expression in mice muscle by in vivo
electrically mediated siRNA delivery. Gene Therapy. 2005;12(3):246–251. [PubMed] 155. Leng Q, Mixson AJ. Small interfering RNA targeting Raf-1 inhibits tumor
growth in vitro and in vivo. Cancer Gene Therapy. 2005;12(8):682–690. [PubMed] 156. Takei Y, Kadomatsu K, Yuzawa Y, Matsuo S, Muramatsu T. A small interfering RNA targeting vascular endothelial
growth factor as cancer therapeutics. Cancer Research. 2004;64(10):3365–3370. [PubMed] 157. Minakuchi Y, Takeshita F, Kosaka N, et al. Atelocollagenmediated synthetic small interfering RNA
delivery for effective gene silencing in vitro and in vivo. Nucleic Acids Research. 2004;32(13):e109. [PubMed] 158. Takeshita F, Minakuchi Y, Nagahara S, et al. Efficient delivery of small interfering RNA to
bone-metastatic tumors by using atelocollagen in vivo. Proceedings of the National Academy of Sciences of the
United States of America. 2005;102(34):12177–12182. [PubMed] 159. Ito M, Yamamoto S, Nimura K, Hiraoka K, Tamai K, Kaneda Y. Rad51 siRNA delivered by HVJ envelope vector enhances the
anti-cancer effect of cisplatin. Journal of Gene Medicine. 2005;7(8):1044–1052. [PubMed] 160. Song E, Zhu P, Lee S-K, et al. Antibody mediated in vivo delivery of small interfering
RNAs via cell-surface receptors. Nature Biotechnology. 2005;23(6):709–717. 161. Yin C, Xi L, Wang X, Eapen M, Kukreja RC. Silencing heat shock factor 1 by small interfering RNA
abrogates heat shock-induced cardioprotection against
ischemiareperfusion injury in mice. Journal of Molecular and Cellular Cardiology. 2005;39(4):681–689. [PubMed] 162. de Jonge J, Holtrop M, Wilschut J, Huckriede A. Reconstituted influenza virus envelopes as an efficient
carrier system for cellular delivery of small-interfering RNAs. Gene Therapy. 2006;13(5):400–411. [PubMed] |
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Proc Natl Acad Sci U S A. 1978 Jan; 75(1):285-8.
[Proc Natl Acad Sci U S A. 1978]Proc Natl Acad Sci U S A. 1978 Jan; 75(1):280-4.
[Proc Natl Acad Sci U S A. 1978]Cell. 1981 Dec; 27(3 Pt 2):487-96.
[Cell. 1981]Cell. 1983 Dec; 35(3 Pt 2):849-57.
[Cell. 1983]Nature. 1998 Feb 19; 391(6669):806-11.
[Nature. 1998]Trends Biotechnol. 1990 Dec; 8(12):340-4.
[Trends Biotechnol. 1990]Cell. 1995 May 19; 81(4):611-20.
[Cell. 1995]Science. 1999 Oct 29; 286(5441):950-2.
[Science. 1999]Genes Dev. 2001 Jan 15; 15(2):188-200.
[Genes Dev. 2001]Nature. 2000 Mar 16; 404(6775):293-6.
[Nature. 2000]FEBS Lett. 2005 Oct 31; 579(26):5841-9.
[FEBS Lett. 2005]Cell. 2001 Nov 2; 107(3):309-21.
[Cell. 2001]Genes Dev. 2001 Jan 15; 15(2):188-200.
[Genes Dev. 2001]Methods. 2002 Feb; 26(2):199-213.
[Methods. 2002]Nucleic Acids Res. 2002 Apr 15; 30(8):1757-66.
[Nucleic Acids Res. 2002]Nucleic Acids Res. 1979 Sep 11; 7(1):179-92.
[Nucleic Acids Res. 1979]Nucleic Acids Res. 2002 Apr 15; 30(8):1757-66.
[Nucleic Acids Res. 2002]J Biol Chem. 2003 May 2; 278(18):15991-7.
[J Biol Chem. 2003]Nucleic Acids Res. 2003 Aug 1; 31(15):4417-24.
[Nucleic Acids Res. 2003]Biotechniques. 2005 Aug; 39(2):215-24.
[Biotechniques. 2005]Nature. 2001 May 24; 411(6836):494-8.
[Nature. 2001]Cell. 2000 Mar 31; 101(1):25-33.
[Cell. 2000]Genes Dev. 2001 Jan 15; 15(2):188-200.
[Genes Dev. 2001]Proc Natl Acad Sci U S A. 2001 Aug 14; 98(17):9742-7.
[Proc Natl Acad Sci U S A. 2001]Nat Genet. 2003 Jul; 34(3):263-4.
[Nat Genet. 2003]Nature. 1999 Oct 7; 401(6753):517-8.
[Nature. 1999]J Exp Med. 1992 Oct 1; 176(4):1125-35.
[J Exp Med. 1992]Adv Drug Deliv Rev. 2002 Sep 13; 54(5):715-58.
[Adv Drug Deliv Rev. 2002]Curr Med Chem. 2003 Jul; 10(14):1307-15.
[Curr Med Chem. 2003]Nat Methods. 2005 Dec; 2(12):967-73.
[Nat Methods. 2005]J Biomed Mater Res. 1999 Jun 5; 45(3):268-75.
[J Biomed Mater Res. 1999]Biotechniques. 2001 Jan; 30(1):74-7, 80-1.
[Biotechniques. 2001]Proc Natl Acad Sci U S A. 1995 Aug 1; 92(16):7297-301.
[Proc Natl Acad Sci U S A. 1995]J Gene Med. 2005 Aug; 7(8):992-1009.
[J Gene Med. 2005]J Gene Med. 2004 Feb; 6 Suppl 1():S3-10.
[J Gene Med. 2004]Gene Ther. 2002 Dec; 9(24):1700-7.
[Gene Ther. 2002]Eur J Pharm Biopharm. 2004 May; 57(3):427-30.
[Eur J Pharm Biopharm. 2004]Gene Ther. 2005 Mar; 12(5):461-6.
[Gene Ther. 2005]J Gene Med. 2005 Feb; 7(2):198-207.
[J Gene Med. 2005]J Control Release. 2004 Feb 20; 95(1):119-31.
[J Control Release. 2004]Proc Natl Acad Sci U S A. 2004 Jun 8; 101(23):8676-81.
[Proc Natl Acad Sci U S A. 2004]Science. 1989 May 12; 244(4905):707-12.
[Science. 1989]J Biol Chem. 1997 Nov 21; 272(47):29482-6.
[J Biol Chem. 1997]Gene Ther. 2000 Feb; 7(3):241-8.
[Gene Ther. 2000]Gene Ther. 1997 Sep; 4(9):943-9.
[Gene Ther. 1997]J Biol Chem. 2004 Feb 6; 279(6):4339-45.
[J Biol Chem. 2004]Gene Ther. 2005 Mar; 12(5):461-6.
[Gene Ther. 2005]Nucleic Acids Res. 2004 Nov 1; 32(19):e149.
[Nucleic Acids Res. 2004]Oncogene. 2002 Aug 22; 21(37):5733-42.
[Oncogene. 2002]J Biol Chem. 1992 Dec 25; 267(36):25889-97.
[J Biol Chem. 1992]Cancer Res. 1997 May 1; 57(9):1814-9.
[Cancer Res. 1997]Gene Ther. 2005 Mar; 12(5):461-6.
[Gene Ther. 2005]Gene Ther. 2005 Mar; 12(5):461-6.
[Gene Ther. 2005]