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The genome of Rhizobium leguminosarum has recognizable core and accessory components
J Peter W Young, Lisa C Crossman, Andrew WB Johnston, Nicholas R Thomson, Zara F Ghazoui, Katherine H Hull, Margaret Wexler, Andrew RJ Curson, Jonathan D Todd, Philip S Poole, Tim H Mauchline, Alison K East, Michael A Quail, Carol Churcher, Claire Arrowsmith, Inna Cherevach, Tracey Chillingworth, Kay Clarke, Ann Cronin, Paul Davis, Audrey Fraser, Zahra Hance, Heidi Hauser, Kay Jagels, Sharon Moule, Karen Mungall, Halina Norbertczak, Ester Rabbinowitsch, Mandy Sanders, Mark Simmonds, Sally Whitehead, Julian Parkhill
Genome Biol. 2006; 7(4): R34. Published online 2006 April 26. doi: 10.1186/gb-2006-7-4-r34
PMCID:
PMC1557990
Abstract Full Text PDF–1.7M Supplementary Material

Is Cited by the Following 55 Articles in this Archive:

The Ruegeria pomeroyi acuI Gene Has a Role in DMSP Catabolism and Resembles yhdH of E. coli and Other Bacteria in Conferring Resistance to Acrylate
Jonathan D. Todd, Andrew R. J. Curson, Matthew J. Sullivan, Mark Kirkwood, Andrew W. B. Johnston
PLoS One. 2012; 7(4): e35947. Published online 2012 April 26. doi: 10.1371/journal.pone.0035947
PMCID:
PMC3338564
Abstract Full Text PDF–569K Supplementary Material
Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics
Vinoy K Ramachandran, Alison K East, Ramakrishnan Karunakaran, J Allan Downie, Philip S Poole
Genome Biol. 2011; 12(10): R106. Published online 2011 October 21. doi: 10.1186/gb-2011-12-10-r106
PMCID:
PMC3333776
Abstract Full Text PDF–694K Supplementary Material
Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination
José L Acosta, Luis E Eguiarte, Rosa I Santamaría, Patricia Bustos, Pablo Vinuesa, Esperanza Martínez-Romero, Guillermo Dávila, Víctor González
BMC Evol Biol. 2011; 11: 305. Published online 2011 October 17. doi: 10.1186/1471-2148-11-305
PMCID:
PMC3215678
Abstract Full Text PDF–856K Supplementary Material
Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins
Humberto Peralta, Gabriela Guerrero, Alejandro Aguilar, Jaime Mora
Biol Direct. 2011; 6: 48. Published online 2011 October 4. doi: 10.1186/1745-6150-6-48
PMCID:
PMC3198989
Abstract Full Text PDF–1.6M Supplementary Material
Modulation of rosR Expression and Exopolysaccharide Production in Rhizobium leguminosarum bv. trifolii by Phosphate and Clover Root Exudates
Monika Janczarek, Anna Skorupska
Int J Mol Sci. 2011; 12(6): 4132–4155. Published online 2011 June 22. doi: 10.3390/ijms12064132
PMCID:
PMC3131613
Abstract Full Text PDF–1006K
DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3
Jonathan D Todd, Mark Kirkwood, Simone Newton-Payne, Andrew W B Johnston
ISME J. 2012 January; 6(1): 223–226. Published online 2011 June 16. doi: 10.1038/ismej.2011.79
PMCID:
PMC3246235
Free in PMC on 2013/01/01
Mutation of a Broadly Conserved Operon (RL3499-RL3502) from Rhizobium leguminosarum Biovar viciae Causes Defects in Cell Morphology and Envelope Integrity
Elizabeth M. Vanderlinde, Samantha A. Magnus, Dinah D. Tambalo, Susan F. Koval, Christopher K. Yost
J Bacteriol. 2011 June; 193(11): 2684–2694. doi: 10.1128/JB.01456-10
PMCID:
PMC3133104
Abstract Full Text PDF–757K Supplementary Material
Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates
Andrzej Mazur, Grażyna Stasiak, Jerzy Wielbo, Agnieszka Kubik-Komar, Monika Marek-Kozaczuk, Anna Skorupska
BMC Microbiol. 2011; 11: 123. Published online 2011 May 30. doi: 10.1186/1471-2180-11-123
PMCID:
PMC3123555
Abstract Full Text PDF–3.1M
The Complete Genome Sequence of ‘Candidatus Liberibacter solanacearum’, the Bacterium Associated with Potato Zebra Chip Disease
Hong Lin, Binghai Lou, Jonathan M. Glynn, Harshavardhan Doddapaneni, Edwin L. Civerolo, Chuanwu Chen, Yongping Duan, Lijuan Zhou, Cheryl M. Vahling
PLoS One. 2011; 6(4): e19135. Published online 2011 April 28. doi: 10.1371/journal.pone.0019135
PMCID:
PMC3084294
Abstract Full Text PDF–1.4M Supplementary Material
Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum
Tomás Villaseñor, Susana Brom, Araceli Dávalos, Luis Lozano, David Romero, Alejandro García-de los Santos
BMC Microbiol. 2011; 11: 66. Published online 2011 April 5. doi: 10.1186/1471-2180-11-66
PMCID:
PMC3082293
Abstract Full Text PDF–300K Supplementary Material
Plasmids with a Chromosome-Like Role in Rhizobia
Cristina Landeta, Araceli Dávalos, Miguel Ángel Cevallos, Otto Geiger, Susana Brom, David Romero
J Bacteriol. 2011 March; 193(6): 1317–1326. Published online 2011 January 7. doi: 10.1128/JB.01184-10
PMCID:
PMC3067620
Abstract Full Text PDF–531K Supplementary Material
Rhizobium leguminosarum bv. trifolii rosR is required for interaction with clover, biofilm formation and adaptation to the environment
Monika Janczarek, Jolanta Kutkowska, Tomasz Piersiak, Anna Skorupska
BMC Microbiol. 2010; 10: 284. Published online 2010 November 11. doi: 10.1186/1471-2180-10-284
PMCID:
PMC2996380
Abstract Full Text PDF–5.2M Supplementary Material
Structures of the lipopolysaccharides from Rhizobium leguminosarum RBL5523 and its UDP-glucose dehydrogenase mutant (exo5)
Artur Muszyński, Marc Laus, Jan W Kijne, Russell W Carlson
Glycobiology. 2011 January; 21(1): 55–68. Published online 2010 September 2. doi: 10.1093/glycob/cwq131
PMCID:
PMC2998983
Abstract Full Text PDF–625K
Characterization and functional analysis of seven flagellin genes in Rhizobium leguminosarum bv. viciae. Characterization of R. leguminosarum flagellins
Dinah D Tambalo, Denise E Bustard, Kate L Del Bel, Susan F Koval, Morgan F Khan, Michael F Hynes
BMC Microbiol. 2010; 10: 219. Published online 2010 August 17. doi: 10.1186/1471-2180-10-219
PMCID:
PMC2936354
Abstract Full Text PDF–6.3M Supplementary Material
Evolutionary Dynamics of Insertion Sequences in Relation to the Evolutionary Histories of the Chromosome and Symbiotic Plasmid Genes of Rhizobium etli Populations
Luis Lozano, Ismael Hernández-González, Patricia Bustos, Rosa I. Santamaría, Valeria Souza, J. Peter W. Young, Guillermo Dávila, Víctor González
Appl Environ Microbiol. 2010 October; 76(19): 6504–6513. Published online 2010 July 30. doi: 10.1128/AEM.01001-10
PMCID:
PMC2950475
Abstract Full Text PDF–1.4M Supplementary Material
Genetic and Metabolic Divergence within a Rhizobium leguminosarum bv. trifolii Population Recovered from Clover Nodules
Jerzy Wielbo, Monika Marek-Kozaczuk, Andrzej Mazur, Agnieszka Kubik-Komar, Anna Skorupska
Appl Environ Microbiol. 2010 July; 76(14): 4593–4600. Published online 2010 May 14. doi: 10.1128/AEM.00667-10
PMCID:
PMC2901751
Abstract Full Text PDF–1.5M Supplementary Material
Disruption of the Glycine Cleavage System Enables Sinorhizobium fredii USDA257 To Form Nitrogen-Fixing Nodules on Agronomically Improved North American Soybean Cultivars
Julio C. Lorio, Won-Seok Kim, Ammulu H. Krishnan, Hari B. Krishnan
Appl Environ Microbiol. 2010 July; 76(13): 4185–4193. Published online 2010 May 7. doi: 10.1128/AEM.00437-10
PMCID:
PMC2897462
Abstract Full Text PDF–1.7M
Heme-responsive DNA Binding by the Global Iron Regulator Irr from Rhizobium leguminosarum
Chloe Singleton, Gaye F. White, Jonathan D. Todd, Sophie J. Marritt, Myles R. Cheesman, Andrew W. B. Johnston, Nick E. Le Brun
J Biol Chem. 2010 May 21; 285(21): 16023–16031. Published online 2010 March 16. doi: 10.1074/jbc.M109.067215
PMCID:
PMC2871471
Abstract Full Text Supplementary Material
Mobile DNA and evolution in the 21st century
James A Shapiro
Mob DNA. 2010; 1: 4. Published online 2010 January 25. doi: 10.1186/1759-8753-1-4
PMCID:
PMC2836002
Abstract Full Text PDF–285K
Conserved Symbiotic Plasmid DNA Sequences in the Multireplicon Pangenomic Structure of Rhizobium etli
Víctor González, José L. Acosta, Rosa I. Santamaría, Patricia Bustos, José L. Fernández, Ismael L. Hernández González, Rafael Díaz, Margarita Flores, Rafael Palacios, Jaime Mora, Guillermo Dávila
Appl Environ Microbiol. 2010 March; 76(5): 1604–1614. Published online 2010 January 4. doi: 10.1128/AEM.02039-09
PMCID:
PMC2832352
Abstract Full Text PDF–2.0M
Characterization of a Gene Family of Outer Membrane Proteins (ropB) in Rhizobium leguminosarum bv. viciae VF39SM and the Role of the Sensor Kinase ChvG in Their Regulation
Dallas L. Foreman, Elizabeth M. Vanderlinde, Denise C. Bay, Christopher K. Yost
J Bacteriol. 2010 February; 192(4): 975–983. Published online 2009 December 18. doi: 10.1128/JB.01140-09
PMCID:
PMC2812955
Abstract Full Text PDF–414K
Rhizobium leguminosarum hupE Encodes a Nickel Transporter Required for Hydrogenase Activity
Belén Brito, Rosa-Isabel Prieto, Ezequiel Cabrera, Marie-Andrée Mandrand-Berthelot, Juan Imperial, Tomás Ruiz-Argüeso, José-Manuel Palacios
J Bacteriol. 2010 February; 192(4): 925–935. Published online 2009 December 18. doi: 10.1128/JB.01045-09
PMCID:
PMC2812973
Abstract Full Text PDF–1.3M
Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation in Rhizobium leguminosarum bv. viciae 3841
Elizabeth M. Vanderlinde, Joe J. Harrison, Artur Muszyński, Russell W. Carlson, Raymond J. Turner, Christopher K. Yost
FEMS Microbiol Ecol. Author manuscript; available in PMC 2010 May 13.
Published in final edited form as: FEMS Microbiol Ecol. 2010 March; 71(3): 327–340. Published online 2009 December 2. doi: 10.1111/j.1574-6941.2009.00824.x
PMCID:
PMC2868943
Abstract Full Text PDF–868K
Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon
Santiago Castillo-Ramírez, Jorge F Vázquez-Castellanos, Víctor González, Miguel A Cevallos
BMC Genomics. 2009; 10: 536. Published online 2009 November 18. doi: 10.1186/1471-2164-10-536
PMCID:
PMC2783167
Abstract Full Text PDF–436K Supplementary Material
A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
David J Studholme, Selena Gimenez Ibanez, Daniel MacLean, Jeffery L Dangl, Jeff H Chang, John P Rathjen
BMC Genomics. 2009; 10: 395. Published online 2009 August 24. doi: 10.1186/1471-2164-10-395
Correction in:
BMC Genomics. 2009; 10: 569.
PMCID:
PMC2745422
Abstract Full Text PDF–3.0M Supplementary Material Correction
Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains
Magdalena Wiesner, Mussaret B Zaidi, Edmundo Calva, Marcos Fernández-Mora, Juan J Calva, Claudia Silva
BMC Microbiol. 2009; 9: 131. Published online 2009 July 3. doi: 10.1186/1471-2180-9-131
PMCID:
PMC2715408
Abstract Full Text PDF–1.5M Supplementary Material
Rhizobium sp. Strain NGR234 Possesses a Remarkable Number of Secretion Systems
Christel Schmeisser, Heiko Liesegang, Dagmar Krysciak, Nadia Bakkou, Antoine Le Quéré, Antje Wollherr, Isabelle Heinemeyer, Burkhard Morgenstern, Andreas Pommerening-Röser, Margarita Flores, Rafael Palacios, Sydney Brenner, Gerhard Gottschalk, Ruth A. Schmitz, William J. Broughton, Xavier Perret, Axel W. Strittmatter, Wolfgang R. Streit
Appl Environ Microbiol. 2009 June; 75(12): 4035–4045. Published online 2009 April 17. doi: 10.1128/AEM.00515-09
PMCID:
PMC2698369
Abstract Full Text PDF–923K Supplementary Material
Transcriptomic Analysis of Rhizobium leguminosarum Biovar viciae in Symbiosis with Host Plants Pisum sativum and Vicia cracca
R. Karunakaran, V. K. Ramachandran, J. C. Seaman, A. K. East, B. Mouhsine, T. H. Mauchline, J. Prell, A. Skeffington, P. S. Poole
J Bacteriol. 2009 June; 191(12): 4002–4014. Published online 2009 April 17. doi: 10.1128/JB.00165-09
PMCID:
PMC2698398
Abstract Full Text PDF–317K Supplementary Material
The cin and rai Quorum-Sensing Regulatory Systems in Rhizobium leguminosarum Are Coordinated by ExpR and CinS, a Small Regulatory Protein Coexpressed with CinI
Anne Edwards, Marijke Frederix, Florence Wisniewski-Dyé, Jacob Jones, Angeles Zorreguieta, J. Allan Downie
J Bacteriol. 2009 May; 191(9): 3059–3067. Published online 2009 March 6. doi: 10.1128/JB.01650-08
PMCID:
PMC2681818
Abstract Full Text PDF–587K
Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria
Steven C. Slater, Barry S. Goldman, Brad Goodner, João C. Setubal, Stephen K. Farrand, Eugene W. Nester, Thomas J. Burr, Lois Banta, Allan W. Dickerman, Ian Paulsen, Leon Otten, Garret Suen, Roy Welch, Nalvo F. Almeida, Frank Arnold, Oliver T. Burton, Zijin Du, Adam Ewing, Eric Godsy, Sara Heisel, Kathryn L. Houmiel, Jinal Jhaveri, Jing Lu, Nancy M. Miller, Stacie Norton, Qiang Chen, Waranyoo Phoolcharoen, Victoria Ohlin, Dan Ondrusek, Nicole Pride, Shawn L. Stricklin, Jian Sun, Cathy Wheeler, Lindsey Wilson, Huijun Zhu, Derek W. Wood
J Bacteriol. 2009 April; 191(8): 2501–2511. Published online 2009 February 27. doi: 10.1128/JB.01779-08
PMCID:
PMC2668409
Abstract Full Text PDF–2.6M Supplementary Material
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