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Comparative profiling of the sense and antisense transcriptome of maize lines
Jiong Ma, Darren J Morrow, John Fernandes, Virginia Walbot
Genome Biol. 2006; 7(3): R22. Published online 2006 March 13. doi: 10.1186/gb-2006-7-3-r22
PMCID:
PMC1557758
Abstract Full Text PDF–553K Supplementary Material

Is Cited by the Following 20 Articles in this Archive:

Maize microarray annotation database
Nanette Coetzer, Alexander A Myburg, Dave K Berger
Plant Methods. 2011; 7: 31. Published online 2011 October 1. doi: 10.1186/1746-4811-7-31
PMCID:
PMC3198759
Abstract Full Text PDF–333K Supplementary Material
Transcriptomes of the Anther Sporophyte: Availability and Uses
Ming-Der Huang, Yue-Ie Caroline Hsing, Anthony H. C. Huang
Plant Cell Physiol. 2011 September; 52(9): 1459–1466. Published online 2011 July 9. doi: 10.1093/pcp/pcr088
PMCID:
PMC3172567
Abstract Full Text PDF–491K
Digital Gene Expression Signatures for Maize Development
Andrea L. Eveland, Namiko Satoh-Nagasawa, Alexander Goldshmidt, Sandra Meyer, Mary Beatty, Hajime Sakai, Doreen Ware, David Jackson
Plant Physiol. 2010 November; 154(3): 1024–1039. Published online 2010 September 10. doi: 10.1104/pp.110.159673
PMCID:
PMC2971585
Abstract Full Text PDF–1005K Supplementary Material
Advances in Maize Genomics and Their Value for Enhancing Genetic Gains from Breeding
Yunbi Xu, Debra J. Skinner, Huixia Wu, Natalia Palacios-Rojas, Jose Luis Araus, Jianbing Yan, Shibin Gao, Marilyn L. Warburton, Jonathan H. Crouch
Int J Plant Genomics. 2009; 2009: 957602. Published online 2009 August 12. doi: 10.1155/2009/957602
PMCID:
PMC2726335
Abstract Full Text PDF–445K
Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize
Xiangfeng Wang, Axel A. Elling, Xueyong Li, Ning Li, Zhiyu Peng, Guangming He, Hui Sun, Yijun Qi, X. Shirley Liu, Xing Wang Deng
Plant Cell. 2009 April; 21(4): 1053–1069. doi: 10.1105/tpc.109.065714
PMCID:
PMC2685623
Abstract Full Text PDF–2.5M Supplementary Material
Analyses of Advanced Rice Anther Transcriptomes Reveal Global Tapetum Secretory Functions and Potential Proteins for Lipid Exine Formation
Ming-Der Huang, Fu-Jin Wei, Cheng-Cheih Wu, Yue-Ie Caroline Hsing, Anthony H.C. Huang
Plant Physiol. 2009 February; 149(2): 694–707. doi: 10.1104/pp.108.131128
PMCID:
PMC2633857
Abstract Full Text PDF–790K Supplementary Material
Male reproductive development: gene expression profiling of maize anther and pollen ontogeny
Jiong Ma, David S Skibbe, John Fernandes, Virginia Walbot
Genome Biol. 2008; 9(12): R181. Published online 2008 December 19. doi: 10.1186/gb-2008-9-12-r181
PMCID:
PMC2646285
Abstract Full Text PDF–718K Supplementary Material
Display of a Maize cDNA library on baculovirus infected insect cells
Helene Y Meller Harel, Veronique Fontaine, Hongying Chen, Ian M Jones, Paul A Millner
BMC Biotechnol. 2008; 8: 64. Published online 2008 August 12. doi: 10.1186/1472-6750-8-64
PMCID:
PMC2527309
Abstract Full Text PDF–247K
Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses
Paula Casati, Virginia Walbot
Epigenetics. Author manuscript; available in PMC 2008 September 23.
Published in final edited form as: Epigenetics. 2008; 3(4): 216–229. Published online 2008 July 16.
PMCID:
PMC2551322
Abstract Full Text PDF–1023K Supplementary Material
Transcript Profiling by 3′-Untranslated Region Sequencing Resolves Expression of Gene Families
Andrea L. Eveland, Donald R. McCarty, Karen E. Koch
Plant Physiol. 2008 January; 146(1): 32–44. doi: 10.1104/pp.107.108597
PMCID:
PMC2230554
Abstract Full Text PDF–870K Supplementary Material
Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development
M. Menossi, M. C. Silva-Filho, M. Vincentz, M.-A. Van-Sluys, G. M. Souza
Int J Plant Genomics. 2008; 2008: 458732. Published online 2007 December 16. doi: 10.1155/2008/458732
PMCID:
PMC2216073
Abstract Full Text PDF–571K
How Many Genes are Needed to Make a Pollen Tube? Lessons from Transcriptomics
Jörg D. Becker, José A. Feijó
Ann Bot. 2007 November; 100(6): 1117–1123. doi: 10.1093/aob/mcm208
PMCID:
PMC2759250
Abstract Full Text PDF–438K
Allele-Specific Expression Patterns Reveal Biases and Embryo-Specific Parent-of-Origin Effects in Hybrid Maize
Nathan M. Springer, Robert M. Stupar
Plant Cell. 2007 August; 19(8): 2391–2402. doi: 10.1105/tpc.107.052258
PMCID:
PMC2002603
Abstract Full Text PDF–706K Supplementary Material
Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
Ana Conesa, Stefan Götz
Int J Plant Genomics. 2008; 2008: 619832. Published online 2007 April 30. doi: 10.1155/2008/619832
PMCID:
PMC2375974
Abstract Full Text PDF–1.8M
Unique, Shared, and Redundant Roles for the Arabidopsis SWI/SNF Chromatin Remodeling ATPases BRAHMA and SPLAYED
Staver Bezhani, Cara Winter, Steve Hershman, John D. Wagner, John F. Kennedy, Chang Seob Kwon, Jennifer Pfluger, Yanhui Su, Doris Wagner
Plant Cell. 2007 February; 19(2): 403–416. doi: 10.1105/tpc.106.048272
PMCID:
PMC1867337
Abstract Full Text PDF–969K Supplementary Material
Androgen responsive intronic non-coding RNAs
Rodrigo Louro, Helder I Nakaya, Paulo P Amaral, Fernanda Festa, Mari C Sogayar, Aline M da Silva, Sergio Verjovski-Almeida, Eduardo M Reis
BMC Biol. 2007; 5: 4. Published online 2007 January 30. doi: 10.1186/1741-7007-5-4
PMCID:
PMC1800835
Abstract Full Text PDF–1.1M Supplementary Material
Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance
Javier Terol, Ana Conesa, Jose M Colmenero, Manuel Cercos, Francisco Tadeo, Javier Agustí, Enriqueta Alós, Fernando Andres, Guillermo Soler, Javier Brumos, Domingo J Iglesias, Stefan Götz, Francisco Legaz, Xavier Argout, Brigitte Courtois, Patrick Ollitrault, Carole Dossat, Patrick Wincker, Raphael Morillon, Manuel Talon
BMC Genomics. 2007; 8: 31. Published online 2007 January 25. doi: 10.1186/1471-2164-8-31
PMCID:
PMC1796867
Abstract Full Text PDF–884K Supplementary Material
A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf
Ruairidh JH Sawers, Peng Liu, Katya Anufrikova, JT Gene Hwang, Thomas P Brutnell
BMC Genomics. 2007; 8: 12. Published online 2007 January 9. doi: 10.1186/1471-2164-8-12
PMCID:
PMC1790712
Abstract Full Text PDF–1.4M Supplementary Material
Cis-transcriptional Variation in Maize Inbred Lines B73 and Mo17 Leads to Additive Expression Patterns in the F1 Hybrid
Robert M. Stupar, Nathan M. Springer
Genetics. 2006 August; 173(4): 2199–2210. doi: 10.1534/genetics.106.060699
PMCID:
PMC1569691
Abstract Full Text PDF–522K
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
Yong Zhang, X. Shirley Liu, Qing-Rong Liu, Liping Wei
Nucleic Acids Res. 2006; 34(12): 3465–3475. Published online 2006 July 18. doi: 10.1093/nar/gkl473
PMCID:
PMC1524920
Abstract Full Text PDF–401K Supplementary Material
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