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Transposable element derived DNaseI-hypersensitive sites in the human genome
Leonardo Mariño-Ramírez, I King Jordan
Biol Direct. 2006; 1: 20. Published online 2006 July 20. doi: 10.1186/1745-6150-1-20
PMCID:
PMC1538576
Abstract Full Text PDF–549K
 Is Cited by the Following 9 Articles in this Archive:
Prediction of Transposable Element Derived Enhancers Using Chromatin Modification Profiles
Ahsan Huda, Eishita Tyagi, Leonardo Mariño-Ramírez, Nathan J. Bowen, Daudi Jjingo, I. King Jordan
PLoS One. 2011; 6(11): e27513. Published online 2011 November 7. doi: 10.1371/journal.pone.0027513
PMCID:
PMC3210180
Abstract Full Text PDF–1.9M Supplementary Material
Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression
Daudi Jjingo, Ahsan Huda, Madhumati Gundapuneni, Leonardo Mariño-Ramírez, I. King Jordan
Genome Biol Evol. 2011; 3: 259–271. Published online 2011 February 28. doi: 10.1093/gbe/evr015
PMCID:
PMC3070429
Abstract Full Text PDF–1.6M
Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features
Yanick Paquet, Alan Anderson
Nucleic Acids Res. 2010 August; 38(15): 4907–4916. Published online 2010 April 14. doi: 10.1093/nar/gkq234
PMCID:
PMC2926601
Abstract Full Text PDF–6.1M Supplementary Material
Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements
Amaury Herpin, Ingo Braasch, Michael Kraeussling, Cornelia Schmidt, Eva C. Thoma, Shuhei Nakamura, Minoru Tanaka, Manfred Schartl
PLoS Genet. 2010 February; 6(2): e1000844. Published online 2010 February 12. doi: 10.1371/journal.pgen.1000844
PMCID:
PMC2820524
Abstract Full Text PDF–2.4M Supplementary Material
A c-Myc regulatory subnetwork from human transposable element sequences
Jianrong Wang, Nathan J. Bowen, Leonardo Mariño-Ramírez, I. King Jordan
Mol Biosyst. Author manuscript; available in PMC 2010 April 7.
Published in final edited form as: Mol Biosyst. 2009 December; 5(12): 1831–1839. Published online 2009 July 21. doi: 10.1039/B908494k
PMCID:
PMC2850603
Abstract Full Text PDF–1.3M Supplementary Material
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F McDonald, I King Jordan
BMC Genomics. 2008; 9: 226. Published online 2008 May 17. doi: 10.1186/1471-2164-9-226
PMCID:
PMC2397414
Abstract Full Text PDF–547K
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site
Kannan Tharakaraman, Olivier Bodenreider, David Landsman, John L. Spouge, Leonardo Mariño-Ramírez
Nucleic Acids Res. 2008 May; 36(8): 2777–2786. Published online 2008 May. doi: 10.1093/nar/gkn137
PMCID:
PMC2377430
Abstract Full Text PDF–619K Supplementary Material
The contribution of transposable elements to the evolution of regulatory networks
Cédric Feschotte
Nat Rev Genet. Author manuscript; available in PMC 2008 December 4.
Published in final edited form as: Nat Rev Genet. 2008 May; 9(5): 397–405. doi: 10.1038/nrg2337
PMCID:
PMC2596197
Abstract Full Text PDF–1.6M
Origin and Evolution of Human microRNAs From Transposable Elements
Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I. King Jordan
Genetics. 2007 June; 176(2): 1323–1337. doi: 10.1534/genetics.107.072553
PMCID:
PMC1894593
Abstract Full Text PDF–1.4M
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