Cited by ..

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

Zbynek Bozdech, Jingchun Zhu, Marcin P Joachimiak, Fred E Cohen, Brian Pulliam, Joseph L DeRisi

Genome Biol. 2003; 4(2): R9. Published online 2003 January 31. doi: 10.1186/gb-2003-4-2-r9

PMCID:: PMC151308

Abstract Full Text PDF–683K Supplementary Material

Is Cited by the Following 90 Articles in this Archive:

Drug-induced permeabilization of parasite's digestive vacuole is a key trigger of programmed cell death in Plasmodium falciparum

J-H Ch'Ng, K Liew, A S-P Goh, E Sidhartha, K S-W Tan

Cell Death Dis. 2011 October; 2(10): e216. Published online 2011 October 13. doi: 10.1038/cddis.2011.97

PMCID:: PMC3219093

Abstract Full Text PDF–806K Supplementary Material

Array CGH Phylogeny: How accurate are Comparative Genomic Hybridization-based trees?

Luz B Gilbert, Takao Kasuga, N Louise Glass, John W Taylor

BMC Genomics. 2011; 12: 487. Published online 2011 October 6. doi: 10.1186/1471-2164-12-487

PMCID:: PMC3206521

Abstract Full Text PDF–484K Supplementary Material

Genome-Wide Direct Target Analysis Reveals a Role for SHORT-ROOT in Root Vascular Patterning through Cytokinin Homeostasis

Hongchang Cui, Yueling Hao, Mikhail Kovtun, Viktor Stolc, Xing-Wang Deng, Hitoshi Sakakibara, Mikiko Kojima

Plant Physiol. 2011 November; 157(3): 1221–1231. Published online 2011 September 27. doi: 10.1104/pp.111.183178

PMCID:: PMC3252171

Abstract Full Text PDF–1.5M

Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes

Antoine Claessens, Ashfaq Ghumra, Archna P Gupta, Sachel Mok, Zbynek Bozdech, J Alexandra Rowe

Malar J. 2011; 10: 180. Published online 2011 June 30. doi: 10.1186/1475-2875-10-180

PMCID:: PMC3155837

Abstract Full Text PDF–6.4M Supplementary Material

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

Charles Runckel, Michelle L. Flenniken, Juan C. Engel, J. Graham Ruby, Donald Ganem, Raul Andino, Joseph L. DeRisi

PLoS One. 2011; 6(6): e20656. Published online 2011 June 7. doi: 10.1371/journal.pone.0020656

PMCID:: PMC3110205

Abstract Full Text PDF–1.2M Supplementary Material

Seeds for effective oligonucleotide design

Lucian Ilie, Silvana Ilie, Shima Khoshraftar, Anahita Mansouri Bigvand

BMC Genomics. 2011; 12: 280. Published online 2011 June 1. doi: 10.1186/1471-2164-12-280

PMCID:: PMC3128067

Abstract Full Text PDF–316K Supplementary Material

Tracking Glideosome-Associated Protein 50 Reveals the Development and Organization of the Inner Membrane Complex of Plasmodium falciparum

Jeffrey A. Yeoman, Eric Hanssen, Alexander G. Maier, Nectarios Klonis, Bohumil Maco, Jake Baum, Lynne Turnbull, Cynthia B. Whitchurch, Matthew W. A. Dixon, Leann Tilley

Eukaryot Cell. 2011 April; 10(4): 556–564. doi: 10.1128/EC.00244-10

PMCID:: PMC3127638

Abstract Full Text PDF–2.3M Supplementary Material

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level

Shu-Hwa Chen, Chen-Zen Lo, Sheng-Yao Su, Bao-Han Kuo, Chao A Hsiung, Chung-Yen Lin

BMC Genomics. 2010; 11(Suppl 4): S6. Published online 2010 December 2. doi: 10.1186/1471-2164-11-S4-S6

PMCID:: PMC3005932

Abstract Full Text PDF–1.4M

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

Christina Kahramanoglou, Aswin S. N. Seshasayee, Ana I. Prieto, David Ibberson, Sabine Schmidt, Jurgen Zimmermann, Vladimir Benes, Gillian M. Fraser, Nicholas M. Luscombe

Nucleic Acids Res. 2011 March; 39(6): 2073–2091. Published online 2010 November 20. doi: 10.1093/nar/gkq934

PMCID:: PMC3064808

Abstract Full Text PDF–2.3M Supplementary Material

Tracing phylogenomic events leading to diversity of Haemophilus influenzae and the emergence of Brazilian Purpuric Fever (BPF)-associated clones

Leka Papazisi, Shashikala Ratnayake, Brian G. Remortel, Geoffrey R. Bock, Wei Liang, Alexander I. Saeed, Jia Liu, Robert D. Fleischmann, Mogens Kilian, Scott N. Peterson

Genomics. Author manuscript; available in PMC 2011 November 1.

Published in final edited form as: Genomics. 2010 November; 96(5): 290–302. Published online 2010 July 30. doi: 10.1016/j.ygeno.2010.07.005

PMCID:: PMC2967034

Abstract Full Text PDF–1.7M Supplementary Material

A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Determinants of Speciation between S. cerevisiae and S. paradoxus, but Suggests More Complex Incompatibilities

Katy C. Kao, Katja Schwartz, Gavin Sherlock

PLoS Genet. 2010 July; 6(7): e1001038. Published online 2010 July 29. doi: 10.1371/journal.pgen.1001038

PMCID:: PMC2912382

Abstract Full Text PDF–1.1M Supplementary Material

VIPR: A probabilistic algorithm for analysis of microbial detection microarrays

Adam F Allred, Guang Wu, Tuya Wulan, Kael F Fischer, Michael R Holbrook, Robert B Tesh, David Wang

BMC Bioinformatics. 2010; 11: 384. Published online 2010 July 20. doi: 10.1186/1471-2105-11-384

PMCID:: PMC2921407

Abstract Full Text PDF–703K Supplementary Material

Protein Kinase A Dependent Phosphorylation of Apical Membrane Antigen 1 Plays an Important Role in Erythrocyte Invasion by the Malaria Parasite

Kerstin Leykauf, Moritz Treeck, Paul R. Gilson, Thomas Nebl, Thomas Braulke, Alan F. Cowman, Tim W. Gilberger, Brendan S. Crabb

PLoS Pathog. 2010 June; 6(6): e1000941. Published online 2010 June 3. doi: 10.1371/journal.ppat.1000941

PMCID:: PMC2880582

Abstract Full Text PDF–2.0M Supplementary Material

A Moonlighting Function of Plasmodium falciparum Histone 3, Mono-Methylated at Lysine 9?

Yen-Hoon Luah, Balbir Kaur Chaal, Eugenia Ziying Ong, Zbynek Bozdech

PLoS One. 2010; 5(4): e10252. Published online 2010 April 19. doi: 10.1371/journal.pone.0010252

PMCID:: PMC2856687

Abstract Full Text PDF–2.4M

Evaluating the Performance of Oligonucleotide Microarrays for Bacterial Strains with Increasing Genetic Divergence from the Reference Strain

Seungdae Oh, Deborah R. Yoder-Himes, James Tiedje, Joonhong Park, Konstantinos T. Konstantinidis

Appl Environ Microbiol. 2010 May; 76(9): 2980–2988. Published online 2010 March 12. doi: 10.1128/AEM.02826-09

PMCID:: PMC2863436

Abstract Full Text PDF–924K

Defining species specific genome differences in malaria parasites

Kingsley JL Liew, Guangan Hu, Zbynek Bozdech, Preiser R Peter

BMC Genomics. 2010; 11: 128. Published online 2010 February 23. doi: 10.1186/1471-2164-11-128

PMCID:: PMC2837034

Abstract Full Text PDF–2.0M Supplementary Material

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments

Laurent Jourdren, Aurélie Duclos, Christian Brion, Thomas Portnoy, Hugues Mathis, Antoine Margeot, Stéphane Le Crom

Nucleic Acids Res. 2010 June; 38(10): e117. Published online 2010 February 20. doi: 10.1093/nar/gkq110

PMCID:: PMC2879536

Abstract Full Text PDF–2.9M Supplementary Material

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle

Balbir K. Chaal, Archna P. Gupta, Brigitta D. Wastuwidyaningtyas, Yen-Hoon Luah, Zbynek Bozdech

PLoS Pathog. 2010 January; 6(1): e1000737. Published online 2010 January 22. doi: 10.1371/journal.ppat.1000737

PMCID:: PMC2809759

Abstract Full Text PDF–2.1M Supplementary Material

Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin

Marjorie L. Fournier, Ariel Paulson, Norman Pavelka, Amber L. Mosley, Karin Gaudenz, William D. Bradford, Earl Glynn, Hua Li, Mihaela E. Sardiu, Brian Fleharty, Christopher Seidel, Laurence Florens, Michael P. Washburn

Mol Cell Proteomics. 2010 February; 9(2): 271–284. Published online 2009 November 10. doi: 10.1074/mcp.M900415-MCP200

PMCID:: PMC2830839

Abstract Full Text Supplementary Material

Screening and Quantification of the Expression of Antibiotic Resistance Genes in Acinetobacter baumannii with a Microarray

Sébastien Coyne, Ghislaine Guigon, Patrice Courvalin, Bruno Périchon

Antimicrob Agents Chemother. 2010 January; 54(1): 333–340. Published online 2009 November 2. doi: 10.1128/AAC.01037-09

PMCID:: PMC2798560

Abstract Full Text PDF–163K

Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates

Margaret J. Mackinnon, Jinguang Li, Sachel Mok, Moses M. Kortok, Kevin Marsh, Peter R. Preiser, Zbynek Bozdech

PLoS Pathog. 2009 October; 5(10): e1000644. Published online 2009 October 30. doi: 10.1371/journal.ppat.1000644

PMCID:: PMC2764095

Abstract Full Text PDF–541K Supplementary Material

An Enhanced Single Base Extension Technique for the Analysis of Complex Viral Populations

Dale R. Webster, Armin G. Hekele, Adam S. Lauring, Kael F. Fischer, Hao Li, Raul Andino, Joseph L. DeRisi

PLoS One. 2009; 4(10): e7453. Published online 2009 October 16. doi: 10.1371/journal.pone.0007453

PMCID:: PMC2759544

Abstract Full Text PDF–513K Supplementary Material

Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

Sarah Kabani, Katelyn Fenn, Alan Ross, Al Ivens, Terry K Smith, Peter Ghazal, Keith Matthews

BMC Genomics. 2009; 10: 427. Published online 2009 September 11. doi: 10.1186/1471-2164-10-427

PMCID:: PMC2753553

Abstract Full Text PDF–3.7M Supplementary Material

Genome-Wide Analysis of Plastid Gene Expression in Potato Leaf Chloroplasts and Tuber Amyloplasts: Transcriptional and Posttranscriptional Control

Vladimir T. Valkov, Nunzia Scotti, Sabine Kahlau, Daniel MacLean, Stefania Grillo, John C. Gray, Ralph Bock, Teodoro Cardi

Plant Physiol. 2009 August; 150(4): 2030–2044. doi: 10.1104/pp.109.140483

PMCID:: PMC2719133

Abstract Full Text PDF–1.0M Supplementary Material

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, Karin Lagesen, Jessica M. Lindvall, Torbjørn Rognes

PLoS ONE. 2009; 4(6): e5943. Published online 2009 June 17. doi: 10.1371/journal.pone.0005943

PMCID:: PMC2691959

Abstract Full Text PDF–547K Supplementary Material

Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

Ben-Wen Li, Amy C Rush, Makedonka Mitreva, Yong Yin, David Spiro, Elodie Ghedin, Gary J Weil

BMC Genomics. 2009; 10: 267. Published online 2009 June 15. doi: 10.1186/1471-2164-10-267

PMCID:: PMC2708187

Abstract Full Text PDF–477K Supplementary Material

An evaluation of custom microarray applications: the oligonucleotide design challenge

Sophie Lemoine, Florence Combes, Stéphane Le Crom

Nucleic Acids Res. 2009 April; 37(6): 1726–1739. Published online 2009 April. doi: 10.1093/nar/gkp053

PMCID:: PMC2665234

Abstract Full Text PDF–1.0M Supplementary Material

Functional Analysis of the Leading Malaria Vaccine Candidate AMA-1 Reveals an Essential Role for the Cytoplasmic Domain in the Invasion Process

Moritz Treeck, Sonja Zacherl, Susann Herrmann, Ana Cabrera, Maya Kono, Nicole S. Struck, Klemens Engelberg, Silvia Haase, Friedrich Frischknecht, Kota Miura, Tobias Spielmann, Tim W. Gilberger

PLoS Pathog. 2009 March; 5(3): e1000322. Published online 2009 March 6. doi: 10.1371/journal.ppat.1000322