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Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria
Gary Xie, Carol A Bonner, Tom Brettin, Raphael Gottardo, Nemat O Keyhani, Roy A Jensen
Genome Biol. 2003; 4(2): R14. Published online 2003 January 29. doi: 10.1186/gb-2003-4-2-r14
PMCID:
PMC151304
Abstract Full Text PDF–231K
 Is Cited by the Following 13 Articles in this Archive:
A General Model of Codon Bias Due to GC Mutational Bias
Gareth A. Palidwor, Theodore J. Perkins, Xuhua Xia
PLoS One. 2010; 5(10): e13431. Published online 2010 October 27. doi: 10.1371/journal.pone.0013431
PMCID:
PMC2965080
Abstract Full Text PDF–1.7M Supplementary Material
A comparative genomics approach to understanding the biosynthesis of the sunscreen scytonemin in cyanobacteria
Tanya Soule, Kendra Palmer, Qunjie Gao, Ruth M Potrafka, Valerie Stout, Ferran Garcia-Pichel
BMC Genomics. 2009; 10: 336. Published online 2009 July 24. doi: 10.1186/1471-2164-10-336
PMCID:
PMC2726228
Abstract Full Text PDF–1.2M
Organization, Evolution, and Expression Analysis of the Biosynthetic Gene Cluster for Scytonemin, a Cyanobacterial UV-Absorbing Pigment
Carla M. Sorrels, Philip J. Proteau, William H. Gerwick
Appl Environ Microbiol. 2009 July; 75(14): 4861–4869. Published online 2009 May 29. doi: 10.1128/AEM.02508-08
PMCID:
PMC2708446
Abstract Full Text PDF–1.2M Supplementary Material
Evolution of prokaryotic SPFH proteins
Markus Hinderhofer, Christina A Walker, Anke Friemel, Claudia AO Stuermer, Heiko M Möller, Alexander Reuter
BMC Evol Biol. 2009; 9: 10. Published online 2009 January 12. doi: 10.1186/1471-2148-9-10
Correction in:
BMC Evol Biol. 2009; 9: 22.
PMCID:
PMC2636767
Abstract Full Text PDF–1.8M Supplementary Material Correction
Evolution of bacterial trp operons and their regulation
Enrique Merino, Roy A Jensen, Charles Yanofsky
Curr Opin Microbiol. Author manuscript; available in PMC 2009 April 1.
Published in final edited form as: Curr Opin Microbiol. 2008 April; 11(2): 78–86. doi: 10.1016/j.mib.2008.02.005
PMCID:
PMC2387123
Abstract Full Text PDF–1.9M
Cohesion Group Approach for Evolutionary Analysis of TyrA, a Protein Family with Wide-Ranging Substrate Specificities
Carol A. Bonner, Terrence Disz, Kaitlyn Hwang, Jian Song, Veronika Vonstein, Ross Overbeek, Roy A. Jensen
Microbiol Mol Biol Rev. 2008 March; 72(1): 13–53. doi: 10.1128/MMBR.00026-07
PMCID:
PMC2268282
Abstract Full Text PDF–8.1M
Phylogenomic analysis of natural selection pressure in Streptococcus genomes
Maria Anisimova, Joseph Bielawski, Katherine Dunn, Ziheng Yang
BMC Evol Biol. 2007; 7: 154. Published online 2007 August 30. doi: 10.1186/1471-2148-7-154
PMCID:
PMC2031904
Abstract Full Text PDF–482K Supplementary Material
Molecular Genetics and Genomic Analysis of Scytonemin Biosynthesis in Nostoc punctiforme ATCC 29133
Tanya Soule, V. Stout, W. D. Swingley, J. C. Meeks, F. Garcia-Pichel
J Bacteriol. 2007 June; 189(12): 4465–4472. Published online 2007 March 9. doi: 10.1128/JB.01816-06
PMCID:
PMC1913356
Abstract Full Text PDF–232K
Molecular Mechanism of Tryptophan-Dependent Transcriptional Regulation in Chlamydia trachomatis
Johnny C. Akers, Ming Tan
J Bacteriol. 2006 June; 188(12): 4236–4243. doi: 10.1128/JB.01660-05
PMCID:
PMC1482941
Abstract Full Text PDF–235K
The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context
Jian Song, Carol A Bonner, Murray Wolinsky, Roy A Jensen
BMC Biol. 2005; 3: 13. Published online 2005 May 12. doi: 10.1186/1741-7007-3-13
PMCID:
PMC1173090
Abstract Full Text PDF–766K Supplementary Material
Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori
Nigel J Saunders, Prawit Boonmee, John F Peden, Stephen A Jarvis
BMC Genomics. 2005; 6: 9. Published online 2005 January 27. doi: 10.1186/1471-2164-6-9
PMCID:
PMC549213
Abstract Full Text PDF–507K
Conservation of adjacency as evidence of paralogous operons
Sarath Chandra Janga, Gabriel Moreno-Hagelsieb
Nucleic Acids Res. 2004; 32(18): 5392–5397. Published online 2004 October 11. doi: 10.1093/nar/gkh882
PMCID:
PMC524292
Abstract Full Text PDF–149K
A core catalytic domain of the TyrA protein family: arogenate dehydrogenase from Synechocystis
Carol A. Bonner, Roy A. Jensen, John E. Gander, Nemat O. Keyhani
Biochem J. 2004 August 15; 382(Pt 1): 279–291. Prepublished online 2004 June 1. Published online 2004 August 10. doi: 10.1042/BJ20031809
PMCID:
PMC1133941
Abstract Full Text PDF–1004K
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