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Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
Subbaya Subramanian, Rakesh K Mishra, Lalji Singh
Genome Biol. 2003; 4(2): R13. Published online 2003 January 23. doi: 10.1186/gb-2003-4-2-r13
PMCID:
PMC151303
Abstract Full Text PDF–232K Supplementary Material
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 Is Cited by the Following 37 Articles in this Archive:
Discovery of EST-SSRs in Lung Cancer: Tagged ESTs with SSRs Lead to Differential Amino Acid and Protein Expression Patterns in Cancerous Tissues
Mohammad Reza Bakhtiarizadeh, Mansour Ebrahimi, Esmaeil Ebrahimie
PLoS One. 2011; 6(11): e27118. Published online 2011 November 4. doi: 10.1371/journal.pone.0027118
PMCID:
PMC3208562
Abstract Full Text PDF–425K Supplementary Material
Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)
Omar Hamarsheh, Ahmad Amro
Parasit Vectors. 2011; 4: 189. Published online 2011 September 29. doi: 10.1186/1756-3305-4-189
PMCID:
PMC3191335
Abstract Full Text PDF–688K
Triplet repeat RNA structure and its role as pathogenic agent and therapeutic target
Wlodzimierz J. Krzyzosiak, Krzysztof Sobczak, Marzena Wojciechowska, Agnieszka Fiszer, Agnieszka Mykowska, Piotr Kozlowski
Nucleic Acids Res. 2012 January; 40(1): 11–26. Published online 2011 September 9. doi: 10.1093/nar/gkr729
PMCID:
PMC3245940
Abstract Full Text PDF–5.9M
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae
Pablo F Cavagnaro, Sang-Min Chung, Sylvie Manin, Mehtap Yildiz, Aamir Ali, Maria S Alessandro, Massimo Iorizzo, Douglas A Senalik, Philipp W Simon
BMC Genomics. 2011; 12: 386. Published online 2011 August 1. doi: 10.1186/1471-2164-12-386
PMCID:
PMC3162538
Abstract Full Text PDF–553K Supplementary Material
In silico comparative analysis of SSR markers in plants
Filipe C Victoria, Luciano C da Maia, Antonio Costa de Oliveira
BMC Plant Biol. 2011; 11: 15. Published online 2011 January 19. doi: 10.1186/1471-2229-11-15
PMCID:
PMC3037304
Abstract Full Text PDF–2.0M Supplementary Material
Passenger Mutations as a Marker of Clonal Cell Lineages in Emerging Neoplasia
Jesse J. Salk, Marshall S. Horwitz
Semin Cancer Biol. Author manuscript; available in PMC 2011 October 15.
Published in final edited form as: Semin Cancer Biol. 2010 October; 20(5): 294–303. Published online 2010 October 15. doi: 10.1016/j.semcancer.2010.10.008
PMCID:
PMC2993762
Abstract Full Text PDF–3.1M
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Pablo F Cavagnaro, Douglas A Senalik, Luming Yang, Philipp W Simon, Timothy T Harkins, Chinnappa D Kodira, Sanwen Huang, Yiqun Weng
BMC Genomics. 2010; 11: 569. Published online 2010 October 15. doi: 10.1186/1471-2164-11-569
PMCID:
PMC3091718
Abstract Full Text PDF–706K Supplementary Material
Mutator phenotypes due to DNA replication infidelity
Mercedes E. Arana, Thomas A. Kunkel
Semin Cancer Biol. Author manuscript; available in PMC 2011 May 4.
Published in final edited form as: Semin Cancer Biol. 2010 October; 20(5): 304–311. Published online 2010 October 8. doi: 10.1016/j.semcancer.2010.10.003
PMCID:
PMC3087159
Abstract Full Text PDF–780K
Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
Christoph Mayer, Florian Leese, Ralph Tollrian
BMC Genomics. 2010; 11: 277. Published online 2010 April 30. doi: 10.1186/1471-2164-11-277
PMCID:
PMC3152781
Abstract Full Text PDF–3.1M Supplementary Material
The nucleotide composition of microsatellites impacts both replication fidelity and mismatch repair in human colorectal cells
Christoph Campregher, Theresa Scharl, Manuela Nemeth, Clemens Honeder, Thomas Jascur, C. Richard Boland, Christoph Gasche
Hum Mol Genet. 2010 July 1; 19(13): 2648–2657. Published online 2010 April 26. doi: 10.1093/hmg/ddq175
PMCID:
PMC2883347
Abstract Full Text PDF–476K Supplementary Material
Trinucleotide repeats in human genome and exome
Piotr Kozlowski, Mateusz de Mezer, Wlodzimierz J. Krzyzosiak
Nucleic Acids Res. 2010 July; 38(12): 4027–4039. Published online 2010 March 9. doi: 10.1093/nar/gkq127
PMCID:
PMC2896521
Abstract Full Text PDF–13M Supplementary Material
Unstable DNA Repair Genes Shaped by Their Own Sequence Modifying Phenotypes
Daniel S. Falster, Sigve Nakken, Marie Bergem-Ohr, Einar Andreas Rødland, Jarle Breivik
J Mol Evol. 2010 March; 70(3): 266–274. Published online 2010 March 6. doi: 10.1007/s00239-010-9328-0
PMCID:
PMC2846273
Abstract Full Text PDF–469K Supplementary Material
Conservation of Human Microsatellites across 450 Million Years of Evolution
Emmanuel Buschiazzo, Neil J. Gemmell
Genome Biol Evol. 2010; 2: 153–165. Published online 2010 February 8. doi: 10.1093/gbe/evq007
PMCID:
PMC2839350
Abstract Full Text PDF–539K Supplementary Material
The Rtt109 histone acetyltransferase facilitates error-free replication to prevent CAG/CTG repeat contractions
Jiahui H. Yang, Catherine H. Freudenreich
DNA Repair (Amst) Author manuscript; available in PMC 2011 April 4.
Published in final edited form as: DNA Repair (Amst). 2010 April 4; 9(4): 414–420. Published online 2010 January 18. doi: 10.1016/j.dnarep.2009.12.022
PMCID:
PMC2847066
Abstract Full Text PDF–413K Supplementary Material
Sequence determinants of human microsatellite variability
Trevor J Pemberton, Conner I Sandefur, Mattias Jakobsson, Noah A Rosenberg
BMC Genomics. 2009; 10: 612. Published online 2009 December 16. doi: 10.1186/1471-2164-10-612
PMCID:
PMC2806349
Abstract Full Text PDF–1.4M Supplementary Material
Tandem repeat distribution of gene transcripts in three plant families
Luciano Carlos da Maia, Velci Queiróz de Souza, Mauricio Marini Kopp, Fernando Irajá Félix de Carvalho, Antonio Costa de Oliveira
Genet Mol Biol. 2009 Oct-Dec; 32(4): 822–833. Published online 2009 December 1. doi: 10.1590/S1415-47572009005000091
PMCID:
PMC3036893
Abstract Full Text PDF–107K
The Remarkable Frequency of Human Immunodeficiency Virus Type 1 Genetic Recombination
Adewunmi Onafuwa-Nuga, Alice Telesnitsky
Microbiol Mol Biol Rev. 2009 September; 73(3): 451–480. doi: 10.1128/MMBR.00012-09
PMCID:
PMC2738136
Abstract Full Text PDF–5.3M
Every Microsatellite is Different: Intrinsic DNA Features Dictate Mutagenesis of Common Microsatellites Present in the Human Genome
Kristin A. Eckert, Suzanne E. Hile
Mol Carcinog. Author manuscript; available in PMC 2010 April 1.
Published in final edited form as: Mol Carcinog. 2009 April; 48(4): 379–388. doi: 10.1002/mc.20499
PMCID:
PMC2731485
Abstract Full Text PDF–404K
Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes
Guy-Franck Richard, Alix Kerrest, Bernard Dujon
Microbiol Mol Biol Rev. 2008 December; 72(4): 686–727. doi: 10.1128/MMBR.00011-08
PMCID:
PMC2593564
Abstract Full Text PDF–1.6M
Long intronic GAA•TTC repeats induce epigenetic changes and reporter gene silencing in a molecular model of Friedreich ataxia
E. Soragni, D. Herman, S. Y. R. Dent, J. M. Gottesfeld, R. D. Wells, M. Napierala
Nucleic Acids Res. 2008 November; 36(19): 6056–6065. Published online 2008 November. doi: 10.1093/nar/gkn604
PMCID:
PMC2577344
Abstract Full Text PDF–1.0M Supplementary Material
Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties
Albino Bacolla, Jacquelynn E. Larson, Jack R. Collins, Jian Li, Aleksandar Milosavljevic, Peter D. Stenson, David N. Cooper, Robert D. Wells
Genome Res. 2008 October; 18(10): 1545–1553. doi: 10.1101/gr.078303.108
PMCID:
PMC2556271
Abstract Full Text PDF–298K
SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation
Luciano Carlos da Maia, Dario Abel Palmieri, Velci Queiroz de Souza, Mauricio Marini Kopp, Fernando Irajá Félix de Carvalho, Antonio Costa de Oliveira
Int J Plant Genomics. 2008; 2008: 412696. Published online 2008 July 27. doi: 10.1155/2008/412696
PMCID:
PMC2486402
Abstract Full Text PDF–1.3M
Fast comparison of DNA sequences by oligonucleotide profiling
Vicente Arnau, Miguel Gallach, Ignacio Marín
BMC Res Notes. 2008; 1: 5. Published online 2008 February 28. doi: 10.1186/1756-0500-1-5
PMCID:
PMC2518268
Abstract Full Text PDF–229K Supplementary Material
Distribution of Polymorphic and Non-Polymorphic Microsatellite Repeats in Xenopus tropicalis
Zhenkang Xu, Laura Gutierrez, Matthew Hitchens, Steve Scherer, Amy K. Sater, Dan E. Wells
Bioinform Biol Insights. 2008; 2: 157–169. Published online 2008 February 26.
PMCID:
PMC2735965
Abstract Full Text PDF–380K
DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences
Suzanne E. Hile, Kristin A. Eckert
Nucleic Acids Res. 2008 February; 36(2): 688–696. Published online 2008 February. doi: 10.1093/nar/gkm1089
PMCID:
PMC2241860
Abstract Full Text PDF–237K Supplementary Material
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
Tae-Sung Kim, James G Booth, Hugh G Gauch, Jr, Qi Sun, Jongsun Park, Yong-Hwan Lee, Kwangwon Lee
BMC Genomics. 2008; 9: 31. Published online 2008 January 23. doi: 10.1186/1471-2164-9-31
PMCID:
PMC2257937
Abstract Full Text PDF–1.9M Supplementary Material
DNA methods for identification of Chinese medicinal materials
Pui Ying Yip, Chi Fai Chau, Chun Yin Mak, Hoi Shan Kwan
Chin Med. 2007; 2: 9. Published online 2007 September 5. doi: 10.1186/1749-8546-2-9
PMCID:
PMC2042497
Abstract Full Text PDF–968K
SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery
Erica Jewell, Andrew Robinson, David Savage, Tim Erwin, Christopher G. Love, Geraldine A. C. Lim, Xi Li, Jacqueline Batley, German C. Spangenberg, David Edwards
Nucleic Acids Res. 2006 July 1; 34(Web Server issue): W656–W659. Published online 2006 July 14. doi: 10.1093/nar/gkl083
PMCID:
PMC1538772
Abstract Full Text PDF–993K
Long homopurine•homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region
Albino Bacolla, Jack R. Collins, Bert Gold, Nadia Chuzhanova, Ming Yi, Robert M. Stephens, Stefan Stefanov, Adam Olsh, John P. Jakupciak, Michael Dean, Richard A. Lempicki, David N. Cooper, Robert D. Wells
Nucleic Acids Res. 2006; 34(9): 2663–2675. Published online 2006 May 19. doi: 10.1093/nar/gkl354
PMCID:
PMC1464109
Abstract Full Text PDF–387K Supplementary Material
Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region
John A. McNeil, Kelly P. Smith, Lisa L. Hall, Jeanne B. Lawrence
Genome Res. 2006 April; 16(4): 477–484. doi: 10.1101/gr.4627606
PMCID:
PMC1457025
Abstract Full Text PDF–330K
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