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Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes
Vivek Anantharaman, L Aravind
Genome Biol. 2003; 4(2): R11. Published online 2003 February 3. doi: 10.1186/gb-2003-4-2-r11
PMCID:
PMC151301
Abstract Full Text PDF–190K Supplementary Material

Is Cited by the Following 50 Articles in this Archive:

A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach
Alistair B. Russell, Pragya Singh, Mitchell Brittnacher, Nhat Khai Bui, Rachel D. Hood, Mike A. Carl, Danielle M. Agnello, Sandra Schwarz, David R. Goodlett, Waldemar Vollmer, Joseph D. Mougous
Cell Host Microbe. Author manuscript; available in PMC 2013 May 17.
Published in final edited form as: Cell Host Microbe. 2012 May 17; 11(5): 538–549. doi: 10.1016/j.chom.2012.04.007
PMCID:
PMC3358704
Free in PMC on 2013/05/17
Synthetic Lethality of the lytE cwlO Genotype in Bacillus subtilis Is Caused by Lack of d,l-Endopeptidase Activity at the Lateral Cell Wall
Masayuki Hashimoto, Seika Ooiwa, Junichi Sekiguchi
J Bacteriol. 2012 February; 194(4): 796–803. doi: 10.1128/JB.05569-11
PMCID:
PMC3272963
Free in PMC on 2012/08/01
A LysM and SH3-Domain Containing Region of the Listeria monocytogenes p60 Protein Stimulates Accessory Cells to Promote Activation of Host NK Cells
Rebecca L. Schmidt, Holly C. Filak, Jack D. Lemon, Terry A. Potter, Laurel L. Lenz
PLoS Pathog. 2011 November; 7(11): e1002368. Published online 2011 November 3. doi: 10.1371/journal.ppat.1002368
PMCID:
PMC3207947
Abstract Full Text PDF–1.4M Supplementary Material
Enzymological analysis of the tumor suppressor A-C1 reveals a novel group of phospholipid-metabolizing enzymes
Naoki Shinohara, Toru Uyama, Xing-Hua Jin, Kazuhito Tsuboi, Takeharu Tonai, Hitoshi Houchi, Natsuo Ueda
J Lipid Res. 2011 November; 52(11): 1927–1935. doi: 10.1194/jlr.M015081
PMCID:
PMC3196224
Free in PMC on 2012/11/01
Essential PcsB putative peptidoglycan hydrolase interacts with the essential FtsXSpn cell division protein in Streptococcus pneumoniae D39
Lok-To Sham, Skye M. Barendt, Kimberly E. Kopecky, Malcolm E. Winkler
Proc Natl Acad Sci U S A. 2011 November 8; 108(45): E1061–E1069. Published online 2011 October 17. doi: 10.1073/pnas.1108323108
Includes additional comments & authors
PMCID:
PMC3215045
Abstract Full Text PDF–1.1M Supplementary Material
Characterization of the Fibrinogen Binding Domain of Bacteriophage Lysin from Streptococcus mitis
Ho Seong Seo, Paul M. Sullam
Infect Immun. 2011 September; 79(9): 3518–3526. doi: 10.1128/IAI.05088-11
PMCID:
PMC3165489
Abstract Full Text PDF–1.2M
Evolution of Retinoid and Steroid Signaling: Vertebrate Diversification from an Amphioxus Perspective
Ricard Albalat, Frédéric Brunet, Vincent Laudet, Michael Schubert
Genome Biol Evol. 2011; 3: 985–1005. Published online 2011 August 18. doi: 10.1093/gbe/evr084
PMCID:
PMC3184775
Abstract Full Text PDF–1.0M
TIG3 Tumor Suppressor-Dependent Organelle Redistribution and Apoptosis in Skin Cancer Cells
Tiffany M. Scharadin, Haibing Jiang, Ralph Jans, Ellen A. Rorke, Richard L. Eckert
PLoS One. 2011; 6(8): e23230. Published online 2011 August 17. doi: 10.1371/journal.pone.0023230
PMCID:
PMC3157364
Abstract Full Text PDF–1.3M
Structural Analysis of Papain-Like NlpC/P60 Superfamily Enzymes with a Circularly Permuted Topology Reveals Potential Lipid Binding Sites
Qingping Xu, Neil D. Rawlings, Hsiu-Ju Chiu, Lukasz Jaroszewski, Heath E. Klock, Mark W. Knuth, Mitchell D. Miller, Marc-Andre Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
PLoS One. 2011; 6(7): e22013. Published online 2011 July 22. doi: 10.1371/journal.pone.0022013
PMCID:
PMC3142127
Abstract Full Text PDF–881K
Type VI secretion delivers bacteriolytic effectors to target cells
Alistair B. Russell, Rachel D. Hood, Nhat Khai Bui, Michele LeRoux, Waldemar Vollmer, Joseph D. Mougous
Nature. Author manuscript; available in PMC 2012 January 21.
Published in final edited form as: Nature. 2011 July 20; 475(7356): 343–347. doi: 10.1038/nature10244
PMCID:
PMC3146020
Abstract Full Text PDF–1.1M Supplementary Material
Key enzymes of the retinoid (visual) cycle in vertebrate retina
Philip D. Kiser, Marcin Golczak, Akiko Maeda, Krzysztof Palczewski
Biochim Biophys Acta. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Biochim Biophys Acta. 2012 January; 1821(1): 137–151. Published online 2011 April 5. doi: 10.1016/j.bbalip.2011.03.005
PMCID:
PMC3158816
Free in PMC on 2013/01/01
Complete genome sequence of a marine roseophage provides evidence into the evolution of gene transfer agents in alphaproteobacteria
Sijun Huang, Yongyu Zhang, Feng Chen, Nianzhi Jiao
Virol J. 2011; 8: 124. Published online 2011 March 17. doi: 10.1186/1743-422X-8-124
PMCID:
PMC3070671
Abstract Full Text PDF–757K Supplementary Material
Structure and mechanism of Escherichia coli glutathionylspermidine amidase belonging to the family of cysteine; histidine-dependent amidohydrolases/peptidases
Chien-Hua Pai, Hsing-Ju Wu, Chun-Hung Lin, Andrew H-J Wang
Protein Sci. 2011 March; 20(3): 557–566. Published online 2011 January 11. doi: 10.1002/pro.589
PMCID:
PMC3064834
Abstract Full Text PDF–539K
Target Genes, Consensus Binding Site, and Role of Phosphorylation for the Response Regulator MtrA of Corynebacterium glutamicum
Melanie Brocker, Christina Mack, Michael Bott
J Bacteriol. 2011 March; 193(5): 1237–1249. Published online 2010 December 23. doi: 10.1128/JB.01032-10
PMCID:
PMC3067596
Abstract Full Text PDF–2.0M Supplementary Material
Functional Analysis of the p40 and p75 Proteins from Lactobacillus casei BL23
Christine Bäuerl, Gaspar Pérez-Martínez, Fang Yan, D. Brent Polk, Vicente Monedero
J Mol Microbiol Biotechnol. 2011 January; 19(4): 231–241. Published online 2010 December 17. doi: 10.1159/000322233
PMCID:
PMC3019367
Abstract Full Text PDF–322K
Structure of the γ-d-glutamyl-l-diamino acid endopeptidase YkfC from Bacillus cereus in complex with l-Ala-γ-d-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Constantina Bakolitsa, Xiaohui Cai, Dennis Carlton, Connie Chen, Hsiu-Ju Chiu, Michelle Chiu, Thomas Clayton, Debanu Das, Marc C. Deller, Lian Duan, Kyle Ellrott, Carol L. Farr, Julie Feuerhelm, Joanna C. Grant, Anna Grzechnik, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Kozbial, S. Sri Krishna, Abhinav Kumar, Winnie W. Lam, David Marciano, Mitchell D. Miller, Andrew T. Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Christina Puckett, Ron Reyes, Henry J. Tien, Christine B. Trame, Henry van den Bedem, Dana Weekes, Tiffany Wooten, Andrew Yeh, Keith O. Hodgson, John Wooley, Marc-André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 October 1; 66(Pt 10): 1354–1364. Published online 2010 July 27. doi: 10.1107/S1744309110021214
PMCID:
PMC2954226
Abstract Full Text PDF–2.5M Supplementary Material
Streptococcus pyogenes Ser/Thr Kinase-regulated Cell Wall Hydrolase Is a Cell Division Plane-recognizing and Chain-forming Virulence Factor
Vijay Pancholi, Gregory Boël, Hong Jin
J Biol Chem. 2010 October 1; 285(40): 30861–30874. Published online 2010 July 19. doi: 10.1074/jbc.M110.153825
PMCID:
PMC2945579
Abstract Full Text Supplementary Material
An Acyl-covalent Enzyme Intermediate of Lecithin:Retinol Acyltransferase
Marcin Golczak, Krzysztof Palczewski
J Biol Chem. 2010 September 17; 285(38): 29217–29222. Published online 2010 July 12. doi: 10.1074/jbc.M110.152314
PMCID:
PMC2937952
Abstract Full Text Supplementary Material
Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells
Lisa Ott, Martina Höller, Roman G Gerlach, Michael Hensel, Johannes Rheinlaender, Tilman E Schäffer, Andreas Burkovski
BMC Microbiol. 2010; 10: 2. Published online 2010 January 5. doi: 10.1186/1471-2180-10-2
PMCID:
PMC2827468
Abstract Full Text PDF–2.8M
Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins
Lakshminarayan M. Iyer, Saraswathi Abhiman, A. Maxwell Burroughs, L. Aravind
Mol Biosyst. Author manuscript; available in PMC 2012 January 29.
Published in final edited form as: Mol Biosyst. 2009 December; 5(12): 1636–1660. Published online 2009 October 13. doi: 10.1039/b917682a
PMCID:
PMC3268129
Abstract Full Text PDF–5.5M Supplementary Material
Cell Wall Hydrolases Affect Germination, Vegetative Growth, and Sporulation in Streptomyces coelicolor
Henry J. Haiser, Mary R. Yousef, Marie A. Elliot
J Bacteriol. 2009 November; 191(21): 6501–6512. Published online 2009 August 28. doi: 10.1128/JB.00767-09
PMCID:
PMC2795291
Abstract Full Text PDF–1.6M Supplementary Material
An Essential Set of Basic DNA Response Elements Is Required for Receptor-Dependent Transcription of the Lecithin:Retinol Acyltransferase (Lrat) Gene
Reza Zolfaghari, A. Catharine Ross
Arch Biochem Biophys. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Arch Biochem Biophys. 2009 September; 489(1-2): 1–9. Published online 2009 August 8. doi: 10.1016/j.abb.2009.08.001
PMCID:
PMC2756149
Abstract Full Text PDF–1.3M
The tumor suppressor gene H-Rev107 functions as a novel Ca2+-independent cytosolic phospholipase A1/2 of the thiol hydrolase type
Toru Uyama, Jun Morishita, Xing-Hua Jin, Yasuo Okamoto, Kazuhito Tsuboi, Natsuo Ueda
J Lipid Res. 2009 April; 50(4): 685–693. doi: 10.1194/jlr.M800453-JLR200
PMCID:
PMC2656662
Abstract Full Text
Influences of Capsule on Cell Shape and Chain Formation of Wild-Type and pcsB Mutants of Serotype 2 Streptococcus pneumoniae
Skye M. Barendt, Adrian D. Land, Lok-To Sham, Wai-Leung Ng, Ho-Ching T. Tsui, Randy J. Arnold, Malcolm E. Winkler
J Bacteriol. 2009 May; 191(9): 3024–3040. Published online 2009 March 6. doi: 10.1128/JB.01505-08
PMCID:
PMC2681789
Abstract Full Text PDF–968K Supplementary Material
Induction of apoptosis by the retinoid inducible growth regulator RIG1 depends on the NC motif in HtTA cervical cancer cells
Fu-Ming Tsai, Rong-Yaun Shyu, Su-Ching Lin, Chang-Chieh Wu, Shun-Yuan Jiang
BMC Cell Biol. 2009; 10: 15. Published online 2009 February 26. doi: 10.1186/1471-2121-10-15
PMCID:
PMC2656461
Abstract Full Text PDF–1.3M Supplementary Material
Structural Basis of Murein Peptide Specificity of a γ-D-glutamyl-L-diamino Acid Endopeptidase
Qingping Xu, Sebastian Sudek, Daniel McMullan, Mitchell D. Miller, Bernhard Geierstanger, David H. Jones, S. Sri Krishna, Glen Spraggon, Badry Bursalay, Polat Abdubek, Claire Acosta, Eileen Ambing, Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton, Jonathan Caruthers, Hsiu-Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Ylva Elias, Marc-Andre Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik, Joanna Hale, Gye Won Han, Justin Haugen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Kozbial, Abhinav Kumar, David Marciano, Andrew T. Morse, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Ron Reyes, Christopher L. Rife, Christina V. Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Guenter Wolf, Chloe Zubieta, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Structure. Author manuscript; available in PMC 2010 February 13.
Published in final edited form as: Structure. 2009 February 13; 17(2): 303–313. doi: 10.1016/j.str.2008.12.008
PMCID:
PMC2667786
Abstract Full Text PDF–1.3M Supplementary Material
Structural Elucidation of the Cys-His-Glu-Asn Proteolytic Relay in the Secreted CHAP Domain Enzyme from the Human Pathogen Staphylococcus saprophyticus
Paolo Rossi, James M. Aramini, Rong Xiao, Chen X. Chen, Chioma Nwosu, Leah A. Owens, Melissa Maglaqui, Rajesh Nair, Markus Fischer, Thomas B. Acton, Barry Honig, Burkhard Rost, Gaetano T. Montelione
Proteins. Author manuscript; available in PMC 2010 February 1.
Published in final edited form as: Proteins. 2009 February 1; 74(2): 515–519. doi: 10.1002/prot.22267
PMCID:
PMC2735724
Full Text PDF–890K Supplementary Material
Bacterial peptidoglycan degrading enzymes and their impact on host muropeptide detection
Jessica Humann, Laurel L. Lenz
J Innate Immun. Author manuscript; available in PMC 2009 March 23.
Published in final edited form as: J Innate Immun. 2009; 1: 88–97. doi: 10.1159/000181181
PMCID:
PMC2659621
Full Text PDF–574K
Deletion of cgR_1596 and cgR_2070, Encoding NlpC/P60 Proteins, Causes a Defect in Cell Separation in Corynebacterium glutamicum R
Yota Tsuge, Hidetaka Ogino, Haruhiko Teramoto, Masayuki Inui, Hideaki Yukawa
J Bacteriol. 2008 December; 190(24): 8204–8214. Published online 2008 October 17. doi: 10.1128/JB.00752-08
PMCID:
PMC2593200
Abstract Full Text PDF–1.0M Supplementary Material
TIG3: a regulator of type I transglutaminase activity in epidermis
Richard L. Eckert, Michael T. Sturniolo, Ralph Jans, Catherine A. Kraft, Haibing Jiang, Ellen A. Rorke
Amino Acids. Author manuscript; available in PMC 2011 June 28.
Published in final edited form as: Amino Acids. 2009 April; 36(4): 739–746. Published online 2008 July 9. doi: 10.1007/s00726-008-0123-9
PMCID:
PMC3124850
Abstract Full Text PDF–396K
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