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Towards reconstruction of gene networks from expression data by supervised learning
Lev A Soinov, Maria A Krestyaninova, Alvis Brazma
Genome Biol. 2003; 4(1): R6. Published online 2003 January 6.
PMCID:
PMC151290
Abstract Full Text PDF–135K Supplementary Material
 Is Cited by the Following 17 Articles in this Archive:
Discovering time-lagged rules from microarray data using gene profile classifiers
Cristian A Gallo, Jessica A Carballido, Ignacio Ponzoni
BMC Bioinformatics. 2011; 12: 123. Published online 2011 April 27. doi: 10.1186/1471-2105-12-123
PMCID:
PMC3111372
Abstract Full Text PDF–689K Supplementary Material
G = MAT: Linking Transcription Factor Expression and DNA Binding Data
Konstantin Tretyakov, Sven Laur, Jaak Vilo
PLoS One. 2011; 6(1): e14559. Published online 2011 January 31. doi: 10.1371/journal.pone.0014559
PMCID:
PMC3031503
Abstract Full Text PDF–244K Supplementary Material
Prognostic transcriptional association networks: a new supervised approach based on regression trees
Isabel Nepomuceno-Chamorro, Francisco Azuaje, Yvan Devaux, Petr V. Nazarov, Arnaud Muller, Jesús S. Aguilar-Ruiz, Daniel R. Wagner
Bioinformatics. 2011 January 15; 27(2): 252–258. Published online 2010 November 21. doi: 10.1093/bioinformatics/btq645
PMCID:
PMC3018815
Abstract Full Text PDF–377K Supplementary Material
Inferring gene regression networks with model trees
Isabel A Nepomuceno-Chamorro , Jesus S Aguilar-Ruiz , Jose C Riquelme
BMC Bioinformatics. 2010; 11: 517. Published online 2010 October 15. doi: 10.1186/1471-2105-11-517
PMCID:
PMC2978221
Abstract Full Text PDF–1.1M Supplementary Material
Inference of Cancer-specific Gene Regulatory Networks Using Soft Computing Rules
Xiaosheng Wang, Osamu Gotoh
Gene Regul Syst Bio. 2010; 4: 19–34. Published online 2010 March 24.
PMCID:
PMC2865768
Abstract Full Text PDF–1.8M Supplementary Material
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
Priit Adler, Raivo Kolde, Meelis Kull, Aleksandr Tkachenko, Hedi Peterson, Jüri Reimand, Jaak Vilo
Genome Biol. 2009; 10(12): R139. Published online 2009 December 4. doi: 10.1186/gb-2009-10-12-r139
PMCID:
PMC2812946
Abstract Full Text PDF–1.0M Supplementary Material
MINER: exploratory analysis of gene interaction networks by machine learning from expression data
Sidath Randeni Kadupitige, Kin Chun Leung, Julia Sellmeier, Jane Sivieng, Daniel R Catchpoole, Michael E Bain, Bruno A Gaëta
BMC Genomics. 2009; 10(Suppl 3): S17. Published online 2009 December 3. doi: 10.1186/1471-2164-10-S3-S17
PMCID:
PMC2788369
Abstract Full Text PDF–626K
An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data
Jianhua Ruan, Youping Deng, Edward J Perkins, Weixiong Zhang
BMC Genomics. 2009; 10(Suppl 1): S8. Published online 2009 July 7. doi: 10.1186/1471-2164-10-S1-S8
PMCID:
PMC2709269
Abstract Full Text PDF–871K Supplementary Material
Information processing in the transcriptional regulatory network of yeast: Functional robustness
Frank Emmert-Streib, Matthias Dehmer
BMC Syst Biol. 2009; 3: 35. Published online 2009 March 19. doi: 10.1186/1752-0509-3-35
PMCID:
PMC2679710
Abstract Full Text PDF–306K
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Arun Rawat, Youping Deng
BMC Bioinformatics. 2008; 9(Suppl 9): S7. Published online 2008 August 12. doi: 10.1186/1471-2105-9-S9-S7
PMCID:
PMC2537558
Abstract Full Text PDF–392K
Inferring cellular networks – a review
Florian Markowetz, Rainer Spang
BMC Bioinformatics. 2007; 8(Suppl 6): S5. Published online 2007 September 27. doi: 10.1186/1471-2105-8-S6-S5
PMCID:
PMC1995541
Abstract Full Text PDF–502K
Current approaches to gene regulatory network modelling
Thomas Schlitt, Alvis Brazma
BMC Bioinformatics. 2007; 8(Suppl 6): S9. Published online 2007 September 27. doi: 10.1186/1471-2105-8-S6-S9
PMCID:
PMC1995542
Abstract Full Text PDF–848K Supplementary Material
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Suman Datta, Bahrad A Sokhansanj
BMC Bioinformatics. 2007; 8: 258. Published online 2007 July 18. doi: 10.1186/1471-2105-8-258
PMCID:
PMC1940030
Abstract Full Text PDF–806K Supplementary Material
BiologicalNetworks: visualization and analysis tool for systems biology
Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarnath Gupta
Nucleic Acids Res. 2006 July 1; 34(Web Server issue): W466–W471. Published online 2006 July 14. doi: 10.1093/nar/gkl308
PMCID:
PMC1538788
Abstract Full Text PDF–1.4M
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun Xiao, Zheng Guo, Qingpu Zhang, Lihong Wang, Lei Du, Jing Li, Li Li, Tianwen Zhang, Qing K Wang
BMC Bioinformatics. 2006; 7: 26. Published online 2006 January 18. doi: 10.1186/1471-2105-7-26
PMCID:
PMC1386718
Abstract Full Text PDF–2.6M Supplementary Material
Linear fuzzy gene network models obtained from microarray data by exhaustive search
Bahrad A Sokhansanj, J Patrick Fitch, Judy N Quong, Andrew A Quong
BMC Bioinformatics. 2004; 5: 108. Published online 2004 August 10. doi: 10.1186/1471-2105-5-108
PMCID:
PMC514698
Abstract Full Text PDF–477K Supplementary Material
Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification
Peter M. Haverty, Ulla Hansen, Zhiping Weng
Nucleic Acids Res. 2004; 32(1): 179–188. Published online 2004 January 2. doi: 10.1093/nar/gkh183
PMCID:
PMC373293
Abstract Full Text PDF–295K Supplementary Material
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