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Mark SB Paget, John D Helmann

Genome Biol. 2003; 4(1): 203. Published online 2003 January 3.

PMCID:: PMC151288

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Is Cited by the Following 73 Articles in this Archive:

Evolutionary Link between the Mycobacterial Plasmid pAL5000 Replication Protein RepB and the Extracytoplasmic Function Family of σ Factors

Arnab Basu, Sujoy Chatterjee, Soniya Chatterjee, Sujoy K. Das Gupta

J Bacteriol. 2012 March; 194(6): 1331–1341. doi: 10.1128/JB.06218-11

PMCID:: PMC3294839

Free in PMC on 2012/09/01

The Novel Sigma Factor-Like Regulator RpoQ Controls Luminescence, Chitinase Activity, and Motility in Vibrio fischeri

Xiaodan Cao, Sarah V. Studer, Karen Wassarman, Yuanxing Zhang, Edward G. Ruby, Tim Miyashiro

mBio. 2012 Jan-Feb; 3(1): e00285-11. Published online 2012 January 10. doi: 10.1128/mBio.00285-11

PMCID:: PMC3252764

Abstract Full Text PDF–1.3M Supplementary Material

Targeting RNA Polymerase Primary σ⁷⁰ as a Therapeutic Strategy against Methicillin-Resistant Staphylococcus aureus by Antisense Peptide Nucleic Acid

Hui Bai, Guojun Sang, Yu You, Xiaoyan Xue, Ying Zhou, Zheng Hou, Jingru Meng, Xiaoxing Luo

PLoS One. 2012; 7(1): e29886. Published online 2012 January 10. doi: 10.1371/journal.pone.0029886

PMCID:: PMC3254626

Abstract Full Text PDF–831K

Transcription activation by the siderophore sensor Btr is mediated by ligand-dependent stimulation of promoter clearance

Ahmed Gaballa, Shawn MacLellan, John D. Helmann

Nucleic Acids Res. 2012 April; 40(8): 3585–3595. Published online 2011 December 30. doi: 10.1093/nar/gkr1280

PMCID:: PMC3333878

Abstract Full Text PDF–1.8M Supplementary Material

An Extracytoplasmic Function Sigma Factor-Mediated Cell Surface Signaling System in Pseudomonas syringae pv. tomato DC3000 Regulates Gene Expression in Response to Heterologous Siderophores

Eric Markel, Charlene Maciak, Bronwyn G. Butcher, Christopher R. Myers, Paul Stodghill, Zhongmeng Bao, Sam Cartinhour, Bryan Swingle

J Bacteriol. 2011 October; 193(20): 5775–5783. doi: 10.1128/JB.05114-11

PMCID:: PMC3187193

Abstract Full Text PDF–667K Supplementary Material

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

Kai Song

Nucleic Acids Res. 2012 February; 40(3): 963–971. Published online 2011 September 27. doi: 10.1093/nar/gkr795

PMCID:: PMC3273801

Abstract Full Text PDF–138K Supplementary Material

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

Kai Song

Nucleic Acids Res. 2012 February; 40(3): 963–971. Published online 2011 September 27. doi: 10.1093/nar/gkr795

PMCID:: PMC3273801

Abstract Full Text PDF–138K Supplementary Material

Identification of the P3 Promoter and Distinct Roles of the Two Promoters of the SaeRS Two-Component System in Staphylococcus aureus

Do-Won Jeong, Hoonsik Cho, Hyunwoo Lee, Chunling Li, Joshua Garza, Melinda Fried, Taeok Bae

J Bacteriol. 2011 September; 193(18): 4672–4684. doi: 10.1128/JB.00353-11

PMCID:: PMC3165640

Abstract Full Text PDF–1.2M

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

Timothy R Schmidt, Edgar J Scott, II, David W Dyer

BMC Genomics. 2011; 12: 430. Published online 2011 August 24. doi: 10.1186/1471-2164-12-430

PMCID:: PMC3171730

Abstract Full Text PDF–959K Supplementary Material

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

Xiaobin Zheng, Gang-Qing Hu, Zhen-Su She, Huaiqiu Zhu

BMC Genomics. 2011; 12: 361. Published online 2011 July 12. doi: 10.1186/1471-2164-12-361

PMCID:: PMC3160421

Abstract Full Text PDF–676K Supplementary Material

Determinants of redox sensitivity in RsrA, a zinc-containing anti-sigma factor for regulating thiol oxidative stress response

Yong-Gyun Jung, Yoo-Bok Cho, Min-Sik Kim, Ji-Sun Yoo, Seok-Hyeon Hong, Jung-Hye Roe

Nucleic Acids Res. 2011 September; 39(17): 7586–7597. Published online 2011 June 17. doi: 10.1093/nar/gkr477

PMCID:: PMC3177212

Abstract Full Text PDF–9.1M Supplementary Material

Genome Sequence of Ostreococcus tauri Virus OtV-2 Throws Light on the Role of Picoeukaryote Niche Separation in the Ocean

Karen D. Weynberg, Michael J. Allen, Ilana C. Gilg, David J. Scanlan, William H. Wilson

J Virol. 2011 May; 85(9): 4520–4529. doi: 10.1128/JVI.02131-10

PMCID:: PMC3126241

Abstract Full Text PDF–1.4M

Different Requirements for σ Region 4 in BvgA Activation of the Bordetella pertussis promoters P_fim3 and P_fhaB

Kimberly B. Decker, Qing Chen, Meng-Lun Hsieh, Philip Boucher, Scott Stibitz, Deborah M. Hinton

J Mol Biol. Author manuscript; available in PMC 2012 June 24.

Published in final edited form as: J Mol Biol. 2011 June 24; 409(5): 692–709. Published online 2011 April 22. doi: 10.1016/j.jmb.2011.04.017

PMCID:: PMC3141349

Free in PMC on 2012/06/24

Escherichia coli σ⁷⁰ senses sequence and conformation of the promoter spacer region

Shivani S. Singh, Athanasios Typas, Regine Hengge, David C. Grainger

Nucleic Acids Res. 2011 July; 39(12): 5109–5118. Published online 2011 March 11. doi: 10.1093/nar/gkr080

PMCID:: PMC3130263

Abstract Full Text PDF–3.9M Supplementary Material

COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms

Peyman Zarrineh, Ana C Fierro, Aminael Sánchez-Rodríguez, Bart De Moor, Kristof Engelen, Kathleen Marchal

Nucleic Acids Res. 2011 April; 39(7): e41. Published online 2010 December 10. doi: 10.1093/nar/gkq1275

PMCID:: PMC3074154

Abstract Full Text PDF–7.5M Supplementary Material

The Evolution of the Phage Shock Protein Response System: Interplay between Protein Function, Genomic Organization, and System Function

M. Huvet, T. Toni, X. Sheng, T. Thorne, G. Jovanovic, C. Engl, M. Buck, J.W. Pinney, M.P.H. Stumpf

Mol Biol Evol. 2011 March; 28(3): 1141–1155. Published online 2010 November 8. doi: 10.1093/molbev/msq301

PMCID:: PMC3041696

Abstract Full Text PDF–1.1M Supplementary Material

Transcriptional control in the prereplicative phase of T4 development

Deborah M Hinton

Virol J. 2010; 7: 289. Published online 2010 October 28. doi: 10.1186/1743-422X-7-289

PMCID:: PMC2988021

Abstract Full Text PDF–1.0M

Crl Binds to Domain 2 of σ^S and Confers a Competitive Advantage on a Natural rpoS Mutant of Salmonella enterica Serovar Typhi

Véronique Monteil, Annie Kolb, Claudine Mayer, Sylviane Hoos, Patrick England, Françoise Norel

J Bacteriol. 2010 December; 192(24): 6401–6410. Published online 2010 October 8. doi: 10.1128/JB.00801-10

PMCID:: PMC3008531

Abstract Full Text PDF–1.5M

Involvement of extracytoplasmic function sigma factors in virulence regulation in Porphyromonas gingivalis W83

Yuetan Dou, Devon Osbourne, Rachelle McKenzie, Hansel M. Fletcher

FEMS Microbiol Lett. Author manuscript; available in PMC 2011 November 1.

Published in final edited form as: FEMS Microbiol Lett. 2010 November; 312(1): 24–32. Published online 2010 August 27. doi: 10.1111/j.1574-6968.2010.02093.x

PMCID:: PMC2970754

Abstract Full Text PDF–1.0M

A Mutation within the β Subunit of Escherichia coli RNA Polymerase Impairs Transcription from Bacteriophage T4 Middle Promoters

Tamara D. James, Michael Cashel, Deborah M. Hinton

J Bacteriol. 2010 November; 192(21): 5580–5587. Published online 2010 August 20. doi: 10.1128/JB.00338-10

PMCID:: PMC2953677

Abstract Full Text PDF–982K

A structural model of anti-anti-σ inhibition by a two-component receiver domain: the PhyR stress response regulator

Julien Herrou, Robert Foreman, Aretha Fiebig, Sean Crosson

Mol Microbiol. Author manuscript; available in PMC 2011 October 1.

Published in final edited form as: Mol Microbiol. 2010 October; 78(2): 290–304. Published online 2010 August 18. doi: 10.1111/j.1365-2958.2010.07323.x

PMCID:: PMC2959141

Abstract Full Text PDF–3.6M

Polyphosphate Binds to the Principal Sigma Factor of RNA Polymerase during Starvation Response in Helicobacter pylori

Zhao Xu Yang, Yan Ning Zhou, Yi Yang, Ding Jun Jin

Mol Microbiol. Author manuscript; available in PMC 2011 August 1.

Published in final edited form as: Mol Microbiol. 2010 August; 77(3): 618–627. Published online 2010 June 11. doi: 10.1111/j.1365-2958.2010.07233.x

PMCID:: PMC2917625

Abstract Full Text PDF–1.6M

Reverse biological engineering of hrdB to enhance the production of avermectins in an industrial strain of Streptomyces avermitilis

Ying Zhuo, Wenquan Zhang, Difei Chen, Hong Gao, Jun Tao, Mei Liu, Zhongxuan Gou, Xianlong Zhou, Bang-Ce Ye, Qing Zhang, Siliang Zhang, Li-Xin Zhang

Proc Natl Acad Sci U S A. 2010 June 22; 107(25): 11250–11254. Published online 2010 June 7. doi: 10.1073/pnas.1006085107

PMCID:: PMC2895102

Abstract Full Text PDF–934K Supplementary Material

Utilization of variably spaced promoter-like elements by the bacterial RNA polymerase holoenzyme during early elongation

Pukhrambam Grihanjali Devi, Elizabeth A. Campbell, Seth A. Darst, Bryce E. Nickels

Mol Microbiol. Author manuscript; available in PMC 2012 February 7.

Published in final edited form as: Mol Microbiol. 2010 February; 75(3): 607–622. Published online 2010 January 12. doi: 10.1111/j.1365-2958.2009.07021.x