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Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state
Romeo Lascaris, Harmen J Bussemaker, André Boorsma, Matt Piper, Hans van der Spek, Les Grivell, Jolanda Blom
Genome Biol. 2003; 4(1): R3. Published online 2002 December 17. doi: 10.1186/gb-2002-4-1-r3
PMCID:
PMC151284
Abstract Full Text PDF–677K Supplementary Material

Is Cited by the Following 22 Articles in this Archive:

cAMP-induced Mitochondrial Compartment Biogenesis: ROLE OF GLUTATHIONE REDOX STATE
Edgar D. Yoboue, Eric Augier, Anne Galinier, Corinne Blancard, Benoît Pinson, Louis Casteilla, Michel Rigoulet, Anne Devin
J Biol Chem. 2012 April 27; 287(18): 14569–14578. Published online 2012 March 6. doi: 10.1074/jbc.M111.302786
PMCID:
PMC3340255
Free in PMC on 2013/04/27
Regulation of the yeast metabolic cycle by transcription factors with periodic activities
Aliz R Rao, Matteo Pellegrini
BMC Syst Biol. 2011; 5: 160. Published online 2011 October 12. doi: 10.1186/1752-0509-5-160
PMCID:
PMC3216092
Abstract Full Text PDF–838K Supplementary Material
Shifting the Fermentative/Oxidative Balance in Saccharomyces cerevisiae by Transcriptional Deregulation of Snf1 via Overexpression of the Upstream Activating Kinase Sak1p
Andreas M. Raab, Verena Hlavacek, Natalia Bolotina, Christine Lang
Appl Environ Microbiol. 2011 March; 77(6): 1981–1989. Published online 2011 January 21. doi: 10.1128/AEM.02219-10
PMCID:
PMC3067313
Abstract Full Text PDF–356K
cAMP/PKA signaling balances respiratory activity with mitochondria dependent apoptosis via transcriptional regulation
Jane E Leadsham, Campbell W Gourlay
BMC Cell Biol. 2010; 11: 92. Published online 2010 November 25. doi: 10.1186/1471-2121-11-92
PMCID:
PMC3001716
Abstract Full Text PDF–1.1M Supplementary Material
TESTLoc: protein subcellular localization prediction from EST data
Yao-Qing Shen, Gertraud Burger
BMC Bioinformatics. 2010; 11: 563. Published online 2010 November 15. doi: 10.1186/1471-2105-11-563
PMCID:
PMC3000424
Abstract Full Text PDF–679K Supplementary Material
Glucose regulates transcription in yeast through a network of signaling pathways
Shadia Zaman, Soyeon I Lippman, Lisa Schneper, Noam Slonim, James R Broach
Mol Syst Biol. 2009; 5: 245. Published online 2009 February 17. doi: 10.1038/msb.2009.2
Correction in:
Mol Syst Biol. 2009; 5: 257.
PMCID:
PMC2657534
Abstract Full Text PDF–1.9M Supplementary Material Correction
Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1
Nicklas Bonander, Cecilia Ferndahl, Petter Mostad, Martin DB Wilks, Celia Chang, Louise Showe, Lena Gustafsson, Christer Larsson, Roslyn M Bill
BMC Genomics. 2008; 9: 365. Published online 2008 July 31. doi: 10.1186/1471-2164-9-365
PMCID:
PMC2536679
Abstract Full Text PDF–694K Supplementary Material
Roles of Oxa1-related inner membrane translocases in assembly of respiratory chain complexes
Nathalie Bonnefoy, Heather L. Fiumera, Geneviève Dujardin, Thomas D. Fox
Biochim Biophys Acta. Author manuscript; available in PMC 2010 January 1.
Published in final edited form as: Biochim Biophys Acta. 2009 January; 1793(1): 60–70. Published online 2008 May 15. doi: 10.1016/j.bbamcr.2008.05.004
PMCID:
PMC2658530
Abstract Full Text PDF–809K
Dissecting complex transcriptional responses using pathway-level scores based on prior information
Harmen J Bussemaker, Lucas D Ward, Andre Boorsma
BMC Bioinformatics. 2007; 8(Suppl 6): S6. Published online 2007 September 27. doi: 10.1186/1471-2105-8-S6-S6
PMCID:
PMC1995543
Abstract Full Text PDF–538K
Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle
Fabiana Perocchi, Lars J Jensen, Julien Gagneur, Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M Steinmetz
PLoS Genet. 2006 October; 2(10): e170. Published online 2006 October 20. doi: 10.1371/journal.pgen.0020170
PMCID:
PMC1617129
Abstract Full Text PDF–1.2M Supplementary Material
Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
David M Levine, David R Haynor, John C Castle, Sergey B Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
Genome Biol. 2006; 7(10): R93. Published online 2006 October 17. doi: 10.1186/gb-2006-7-10-r93
PMCID:
PMC1794557
Abstract Full Text PDF–1.3M Supplementary Material
When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
M T A P Kresnowati, W A van Winden, M J H Almering, A ten Pierick, C Ras, T A Knijnenburg, P Daran-Lapujade, J T Pronk, J J Heijnen, J M Daran
Mol Syst Biol. 2006; 2: 49. Published online 2006 September 12. doi: 10.1038/msb4100083
PMCID:
PMC1681515
Abstract Full Text PDF–526K Supplementary Material
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
Markus J. Herrgård, Baek-Seok Lee, Vasiliy Portnoy, Bernhard Ø. Palsson
Genome Res. 2006 May; 16(5): 627–635. doi: 10.1101/gr.4083206
PMCID:
PMC1457053
Abstract Full Text PDF–727K
MitoP2: the mitochondrial proteome database—now including mouse data
H. Prokisch, C. Andreoli, U. Ahting, K. Heiss, A. Ruepp, C. Scharfe, T. Meitinger
Nucleic Acids Res. 2006 January 1; 34(Database issue): D705–D711. Published online 2005 December 28. doi: 10.1093/nar/gkj127
PMCID:
PMC1347489
Abstract Full Text PDF–519K Supplementary Material
Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis
Emmitt R Jolly, Chen-Shan Chin, Ira Herskowitz, Hao Li
BMC Bioinformatics. 2005; 6: 275. Published online 2005 November 18. doi: 10.1186/1471-2105-6-275
PMCID:
PMC1326232
Abstract Full Text PDF–779K Supplementary Material
Improvement of Galactose Uptake in Saccharomyces cerevisiae through Overexpression of Phosphoglucomutase: Example of Transcript Analysis as a Tool in Inverse Metabolic Engineering
Christoffer Bro, Steen Knudsen, Birgitte Regenberg, Lisbeth Olsson, Jens Nielsen
Appl Environ Microbiol. 2005 November; 71(11): 6465–6472. doi: 10.1128/AEM.71.11.6465-6472.2005
PMCID:
PMC1287681
Abstract Full Text PDF–135K
Assembly of the Hap2p/Hap3p/Hap4p/Hap5p-DNA Complex in Saccharomyces cerevisiae
David S. McNabb, Inés Pinto
Eukaryot Cell. 2005 November; 4(11): 1829–1839. doi: 10.1128/EC.4.11.1829-1839.2005
PMCID:
PMC1287863
Abstract Full Text PDF–303K
Novel Regulatory Function for the CCAAT-Binding Factor in Candida albicans
Duncan C. Johnson, Kristin E. Cano, Erika C. Kroger, David S. McNabb
Eukaryot Cell. 2005 October; 4(10): 1662–1676. doi: 10.1128/EC.4.10.1662-1676.2005
PMCID:
PMC1265901
Abstract Full Text PDF–706K
T-profiler: scoring the activity of predefined groups of genes using gene expression data
André Boorsma, Barrett C. Foat, Daniel Vis, Frans Klis, Harmen J. Bussemaker
Nucleic Acids Res. 2005 July 1; 33(Web Server issue): W592–W595. Published online 2005 June 27. doi: 10.1093/nar/gki484
PMCID:
PMC1160244
Abstract Full Text PDF–180K
Saccharomyces cerevisiae Engineered for Xylose Metabolism Exhibits a Respiratory Response
Yong-Su Jin, Jose M. Laplaza, Thomas W. Jeffries
Appl Environ Microbiol. 2004 November; 70(11): 6816–6825. doi: 10.1128/AEM.70.11.6816-6825.2004
PMCID:
PMC525251
Abstract Full Text PDF–809K
Integrative Analysis of the Mitochondrial Proteome in Yeast
Holger Prokisch, Curt Scharfe, David G Camp, II, Wenzhong Xiao, Lior David, Christophe Andreoli, Matthew E Monroe, Ronald J Moore, Marina A Gritsenko, Christian Kozany, Kim K Hixson, Heather M Mottaz, Hans Zischka, Marius Ueffing, Zelek S Herman, Ronald W Davis, Thomas Meitinger, Peter J Oefner, Richard D Smith, Lars M Steinmetz
PLoS Biol. 2004 June; 2(6): e160. Published online 2004 June 15. doi: 10.1371/journal.pbio.0020160
PMCID:
PMC423137
Abstract Full Text PDF–590K Supplementary Material
MitoP2, an integrated database on mitochondrial proteins in yeast and man
C. Andreoli, H. Prokisch, K. Hörtnagel, J. C. Mueller, M. Münsterkötter, C. Scharfe, T. Meitinger
Nucleic Acids Res. 2004 January 1; 32(Database issue): D459–D462. doi: 10.1093/nar/gkh137
PMCID:
PMC308871
Abstract Full Text PDF–193K
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