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Systematic determination of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak, Amy Beaton, Richard Weiszmann, Elaine Kwan, ShengQiang Shu, Suzanna E Lewis, Stephen Richards, Michael Ashburner, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
Genome Biol. 2002; 3(12): research0088.1–88.14. Published online 2002 December 23. doi: 10.1186/gb-2002-3-12-research0088
PMCID:
PMC151190
Abstract Full Text PDF–1.9M

Is Cited by the Following 79 Articles in this Archive:

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature
Evgeny Z. Kvon, Gerald Stampfel, J. Omar Yáñez-Cuna, Barry J. Dickson, Alexander Stark
Genes Dev. 2012 May 1; 26(9): 908–913. doi: 10.1101/gad.188052.112
PMCID:
PMC3347788
Free in PMC on 2012/11/01
Conserved properties of Drosophila and human spermatozoal mRNA repertoires
Bettina E. Fischer, Elizabeth Wasbrough, Lisa A. Meadows, Owen Randlet, Steve Dorus, Timothy L. Karr, Steven Russell
Proc Biol Sci. 2012 July 7; 279(1738): 2636–2644. Published online 2012 February 29. doi: 10.1098/rspb.2012.0153
PMCID:
PMC3350705
Free in PMC on 2013/07/07
Uberon, an integrative multi-species anatomy ontology
Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel
Genome Biol. 2012; 13(1): R5. Published online 2012 January 31. doi: 10.1186/gb-2012-13-1-r5
PMCID:
PMC3334586
Abstract Full Text PDF–1.1M Supplementary Material
Hundreds of putatively functional small open reading frames in Drosophila
Emmanuel Ladoukakis, Vini Pereira, Emile G Magny, Adam Eyre-Walker, Juan Pablo Couso
Genome Biol. 2011; 12(11): R118. Published online 2011 November 25. doi: 10.1186/gb-2011-12-11-r118
PMCID:
PMC3334604
Abstract Full Text PDF–939K Supplementary Material
Liquid facets-Related (lqfR) Is Required for Egg Chamber Morphogenesis during Drosophila Oogenesis
Peter A. Leventis, Tanya R. Da Sylva, Nimerta Rajwans, Sylwia Wasiak, Peter S. McPherson, Gabrielle L. Boulianne
PLoS One. 2011; 6(10): e25466. Published online 2011 October 17. doi: 10.1371/journal.pone.0025466
PMCID:
PMC3197181
Abstract Full Text PDF–2.4M Supplementary Material
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation
Vikki M. Weake, Jamie O. Dyer, Christopher Seidel, Andrew Box, Selene K. Swanson, Allison Peak, Laurence Florens, Michael P. Washburn, Susan M. Abmayr, Jerry L. Workman
Genes Dev. 2011 July 15; 25(14): 1499–1509. doi: 10.1101/gad.2046211
PMCID:
PMC3143940
Abstract Full Text PDF–1.1M
TBP-related factors: a paradigm of diversity in transcription initiation
Waseem Akhtar, Gert Jan C Veenstra
Cell Biosci. 2011; 1: 23. Published online 2011 June 27. doi: 10.1186/2045-3701-1-23
PMCID:
PMC3142196
Abstract Full Text PDF–2.6M
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
Sean Thomas, Xiao-Yong Li, Peter J Sabo, Richard Sandstrom, Robert E Thurman, Theresa K Canfield, Erika Giste, William Fisher, Ann Hammonds, Susan E Celniker, Mark D Biggin, John A Stamatoyannopoulos
Genome Biol. 2011; 12(5): R43. Published online 2011 May 11. doi: 10.1186/gb-2011-12-5-r43
PMCID:
PMC3219966
Abstract Full Text PDF–1.5M Supplementary Material
Regulation and Functions of the lms Homeobox Gene during Development of Embryonic Lateral Transverse Muscles and Direct Flight Muscles in Drosophila
Dominik Müller, Teresa Jagla, Ludivine Mihaila Bodart, Nina Jährling, Hans-Ulrich Dodt, Krzysztof Jagla, Manfred Frasch
PLoS One. 2010; 5(12): e14323. Published online 2010 December 15. doi: 10.1371/journal.pone.0014323
PMCID:
PMC3002276
Abstract Full Text PDF–16M Supplementary Material
Combinatorial Binding Leads to Diverse Regulatory Responses: Lmd Is a Tissue-Specific Modulator of Mef2 Activity
Paulo M. F. Cunha, Thomas Sandmann, E. Hilary Gustafson, Lucia Ciglar, Michael P. Eichenlaub, Eileen E. M. Furlong
PLoS Genet. 2010 July; 6(7): e1001014. Published online 2010 July 1. doi: 10.1371/journal.pgen.1001014
PMCID:
PMC2895655
Abstract Full Text PDF–2.7M Supplementary Material
Dynamic CRM occupancy reflects a temporal map of developmental progression
Bartek Wilczyński, Eileen E M Furlong
Mol Syst Biol. 2010; 6: 383. Published online 2010 June 22. doi: 10.1038/msb.2010.35
PMCID:
PMC2913398
Abstract Full Text PDF–1.3M Supplementary Material
Sex and the Single Cell. II. There Is a Time and Place for Sex
Carmen C. Robinett, Alexander G. Vaughan, Jon-Michael Knapp, Bruce S. Baker
PLoS Biol. 2010 May; 8(5): e1000365. Published online 2010 May 4. doi: 10.1371/journal.pbio.1000365
PMCID:
PMC2864297
Abstract Full Text PDF–1.2M Supplementary Material
The developmental expression dynamics of Drosophila melanogaster transcription factors
Boris Adryan, Sarah A Teichmann
Genome Biol. 2010; 11(4): R40. Published online 2010 April 12. doi: 10.1186/gb-2010-11-4-r40
PMCID:
PMC2884543
Abstract Full Text PDF–1.3M Supplementary Material
A doublecortin containing microtubule-associated protein is implicated in mechanotransduction in Drosophila sensory cilia
S. Bechstedt, J.T. Albert, D.P. Kreil, T. Müller-Reichert, M.C. Göpfert, J. Howard
Nat Commun. 2010 April 12; 1(1): 1–11. doi: 10.1038/ncomms1007
PMCID:
PMC2892299
Abstract Full Text PDF–995K Supplementary Material
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape
Erwin Frise, Ann S Hammonds, Susan E Celniker
Mol Syst Biol. 2010; 6: 345. Published online 2010 January 19. doi: 10.1038/msb.2009.102
PMCID:
PMC2824522
Abstract Full Text PDF–3.3M Supplementary Material
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images
Daniel L. Mace, Nicole Varnado, Weiping Zhang, Erwin Frise, Uwe Ohler
Bioinformatics. 2010 March 15; 26(6): 761–769. Published online 2009 November 26. doi: 10.1093/bioinformatics/btp658
PMCID:
PMC3140183
Abstract Full Text PDF–580K Supplementary Material
The Genetic Basis of Transgressive Ovary Size in Honeybee Workers
Timothy A. Linksvayer, Olav Rueppell, Adam Siegel, Osman Kaftanoglu, Robert E. Page, Jr., Gro V. Amdam
Genetics. 2009 October; 183(2): 693–707. doi: 10.1534/genetics.109.105452
PMCID:
PMC2766328
Abstract Full Text PDF–2.1M
Genes encoding novel secreted and transmembrane proteins are temporally and spatially regulated during Drosophila melanogaster embryogenesis
Alejandro Zúñiga, Christian Hödar, Patricia Hanna, Freddy Ibáñez, Pablo Moreno, Rodrigo Pulgar, Luis Pastenes, Mauricio González, Verónica Cambiazo
BMC Biol. 2009; 7: 61. Published online 2009 September 22. doi: 10.1186/1741-7007-7-61
PMCID:
PMC2761875
Abstract Full Text PDF–1.2M Supplementary Material
Deciphering the genetic code of morphogenesis using functional genomics
Athea Vichas, Jennifer A Zallen
J Biol. 2009; 8(8): 76. Published online 2009 September 22. doi: 10.1186/jbiol180
PMCID:
PMC2776919
Abstract Full Text PDF–204K
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
James C Costello, Mehmet M Dalkilic, Scott M Beason, Jeff R Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian D Eads, Justen R Andrews
Genome Biol. 2009; 10(9): R97. Published online 2009 September 16. doi: 10.1186/gb-2009-10-9-r97
PMCID:
PMC2768986
Abstract Full Text PDF–2.6M Supplementary Material
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome
Elizabeth A Rach, Hsiang-Yu Yuan, William H Majoros, Pavel Tomancak, Uwe Ohler
Genome Biol. 2009; 10(7): R73. Published online 2009 July 9. doi: 10.1186/gb-2009-10-7-r73
PMCID:
PMC2728527
Abstract Full Text PDF–1.6M Supplementary Material
Unlocking the secrets of the genome
Susan E. Celniker, Laura A. L. Dillon, Mark B. Gerstein, Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen, Manolis Kellis, Eric C. Lai, Jason D. Lieb, David M. MacAlpine, Gos Micklem, Fabio Piano, Michael Snyder, Lincoln Stein, Kevin P. White, Robert H. Waterston
Nature. Author manuscript; available in PMC 2010 March 22.
Published in final edited form as: Nature. 2009 June 18; 459(7249): 927–930. doi: 10.1038/459927a
PMCID:
PMC2843545
Abstract Full Text PDF–635K Supplementary Material
Regulation of glutamate receptor subunit availability by microRNAs
Julie Karr, Vasia Vagin, Kaiyun Chen, Subhashree Ganesan, Oxana Olenkina, Vladimir Gvozdev, David E. Featherstone
J Cell Biol. 2009 May 18; 185(4): 685–697. doi: 10.1083/jcb.200902062
PMCID:
PMC2711579
Abstract Full Text PDF–4.0M Supplementary Material
Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs
Barrett C Foat, Gary D Stormo
Mol Syst Biol. 2009; 5: 268. Published online 2009 April 28. doi: 10.1038/msb.2009.24
PMCID:
PMC2683727
Abstract Full Text PDF–654K Supplementary Material
A bag-of-words approach for Drosophila gene expression pattern annotation
Shuiwang Ji, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye
BMC Bioinformatics. 2009; 10: 119. Published online 2009 April 21. doi: 10.1186/1471-2105-10-119
PMCID:
PMC2680406
Abstract Full Text PDF–6.0M
Identification of Receptor-Tyrosine-Kinase-Signaling Target Genes Reveals Receptor-Specific Activities and Pathway Branchpoints During Drosophila Development
John R. Leatherbarrow, Marc S. Halfon
Genetics. 2009 April; 181(4): 1335–1345. doi: 10.1534/genetics.108.098475
PMCID:
PMC2666503
Abstract Full Text PDF–1.3M
Anterior-posterior positional information in the absence of a strong Bicoid gradient
Amanda Ochoa-Espinosa, Danyang Yu, Aristotelis Tsirigos, Paolo Struffi, Stephen Small
Proc Natl Acad Sci U S A. 2009 March 10; 106(10): 3823–3828. Published online 2009 February 23. doi: 10.1073/pnas.0807878105
PMCID:
PMC2656164
Abstract Full Text PDF–1.2M Supplementary Material
Integrating Computational Biology and Forward Genetics in Drosophila
Stein Aerts, Sven Vilain, Shu Hu, Leon-Charles Tranchevent, Roland Barriot, Jiekun Yan, Yves Moreau, Bassem A. Hassan, Xiao-Jiang Quan
PLoS Genet. 2009 January; 5(1): e1000351. Published online 2009 January 23. doi: 10.1371/journal.pgen.1000351
PMCID:
PMC2628282
Abstract Full Text PDF–667K Supplementary Material
Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution
Carlos Quijano, Pavel Tomancak, Jesus Lopez-Marti, Mikita Suyama, Peer Bork, Marco Milan, David Torrents, Miguel Manzanares
Genome Biol. 2008; 9(12): R176. Published online 2008 December 16. doi: 10.1186/gb-2008-9-12-r176
PMCID:
PMC2646280
Abstract Full Text PDF–550K Supplementary Material
A combinatorial code for pattern formation in Drosophila oogenesis
N. Yakoby, C.A. Bristow, D. Gong, X. Schafer, J. Lembong, J.J. Zartman, M.S. Halfon, T. Schüpbach, S.Y. Shvartsman
Dev Cell. Author manuscript; available in PMC 2010 February 16.
Published in final edited form as: Dev Cell. 2008 November; 15(5): 725. doi: 10.1016/j.devcel.2008.09.008
PMCID:
PMC2822874
Abstract Full Text PDF–1.9M Supplementary Material
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