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The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker
Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 December 23. doi: 10.1186/gb-2002-3-12-research0084
PMCID:
PMC151186
Abstract Full Text PDF–330K Supplementary Material

Is Cited by the Following 73 Articles in this Archive:

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster
Raquel S. Linheiro, Casey M. Bergman
PLoS One. 2012; 7(2): e30008. Published online 2012 February 9. doi: 10.1371/journal.pone.0030008
PMCID:
PMC3276498
Abstract Full Text PDF–632K Supplementary Material
Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
Robert Kofler, Andrea J. Betancourt, Christian Schlötterer
PLoS Genet. 2012 January; 8(1): e1002487. Published online 2012 January 26. doi: 10.1371/journal.pgen.1002487
PMCID:
PMC3266889
Abstract Full Text PDF–517K Supplementary Material
Molecular Evolution in Nonrecombining Regions of the Drosophila melanogaster Genome
José L. Campos, Brian Charlesworth, Penelope R. Haddrill
Genome Biol Evol. 2012; 4(3): 278–288. Published online 2012 January 23. doi: 10.1093/gbe/evs010
PMCID:
PMC3318434
Abstract Full Text PDF–217K
Role of piRNAs in the Drosophila telomere homeostasis
Sergey Shpiz, Alla Kalmykova
Mob Genet Elements. 2011 November 1; 1(4): 274–278. doi: 10.4161/mge.18301
PMCID:
PMC3337136
Abstract Full Text PDF–239K
The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones
Paula M Moolhuijzen, Ala E Lew-Tabor, Jess A T Morgan, Manuel Rodriguez Valle, Daniel G Peterson, Scot E Dowd, Felix D Guerrero, Matthew I Bellgard, Rudi Appels
BMC Res Notes. 2011; 4: 254. Published online 2011 July 22. doi: 10.1186/1756-0500-4-254
PMCID:
PMC3160391
Abstract Full Text PDF–1.4M Supplementary Material
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
Nicole C. Riddle, Aki Minoda, Peter V. Kharchenko, Artyom A. Alekseyenko, Yuri B. Schwartz, Michael Y. Tolstorukov, Andrey A. Gorchakov, Jacob D. Jaffe, Cameron Kennedy, Daniela Linder-Basso, Sally E. Peach, Gregory Shanower, Haiyan Zheng, Mitzi I. Kuroda, Vincenzo Pirrotta, Peter J. Park, Sarah C.R. Elgin, Gary H. Karpen
Genome Res. 2011 February; 21(2): 147–163. doi: 10.1101/gr.110098.110
PMCID:
PMC3032919
Abstract Full Text PDF–2.1M
Evolutionary Dynamics of the Ty3/Gypsy LTR Retrotransposons in the Genome of Anopheles gambiae
Jose Manuel C. Tubio, Marta Tojo, Laia Bassaganyas, Georgia Escaramis, Igor V. Sharakhov, Maria V. Sharakhova, Cristian Tornador, Maria F. Unger, Horacio Naveira, Javier Costas, Nora J. Besansky
PLoS One. 2011; 6(1): e16328. Published online 2011 January 24. doi: 10.1371/journal.pone.0016328
PMCID:
PMC3026039
Abstract Full Text PDF–1.2M Supplementary Material
Genome-wide profiling of forum domains in Drosophila melanogaster
Nickolai A. Tchurikov, Olga V. Kretova, Dmitri V. Sosin, Ivan A. Zykov, Igor F. Zhimulev, Yuri V. Kravatsky
Nucleic Acids Res. 2011 May; 39(9): 3667–3685. Published online 2011 January 18. doi: 10.1093/nar/gkq1353
PMCID:
PMC3089479
Abstract Full Text PDF–17M Supplementary Material
Population Genomics of Transposable Elements in Drosophila melanogaster
Dmitri A. Petrov, Anna-Sophie Fiston-Lavier, Mikhail Lipatov, Kapa Lenkov, Josefa González
Mol Biol Evol. 2011 May; 28(5): 1633–1644. Published online 2010 December 16. doi: 10.1093/molbev/msq337
PMCID:
PMC3080135
Abstract Full Text PDF–485K Supplementary Material
The Cytoskeletal Regulator Zyxin is Required for Viability in Drosophila melanogaster
Patricia J. Renfranz, Elizabeth Blankman, Mary C. Beckerle
Anat Rec (Hoboken) Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Anat Rec (Hoboken). 2010 September; 293(9): 1455–1469. doi: 10.1002/ar.21193
PMCID:
PMC2939194
Abstract Full Text PDF–3.0M
Molecular Evolution of piRNA and Transposon Control Pathways in Drosophila
C.D. Malone, G.J. Hannon
Cold Spring Harb Symp Quant Biol. Author manuscript; available in PMC 2011 September 27.
Published in final edited form as: Cold Spring Harb Symp Quant Biol. 2009; 74: 225–234. Published online 2010 May 7. doi: 10.1101/sqb.2009.74.052
PMCID:
PMC3181074
Abstract Full Text PDF–1.6M
DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex
Sarah Schaack, Eunjin Choi, Michael Lynch, Ellen J Pritham
Genome Biol. 2010; 11(4): R46. Published online 2010 April 30. doi: 10.1186/gb-2010-11-4-r46
PMCID:
PMC2884549
Abstract Full Text PDF–1.1M Supplementary Material
Transposable elements in natural populations of Drosophila melanogaster
Yuh Chwen G. Lee, Charles H. Langley
Philos Trans R Soc Lond B Biol Sci. 2010 April 27; 365(1544): 1219–1228. doi: 10.1098/rstb.2009.0318
PMCID:
PMC2871824
Abstract Full Text PDF–475K
Splinkerette PCR for Mapping Transposable Elements in Drosophila
Christopher J. Potter, Liqun Luo
PLoS One. 2010; 5(4): e10168. Published online 2010 April 13. doi: 10.1371/journal.pone.0010168
PMCID:
PMC2854151
Abstract Full Text PDF–4.1M Supplementary Material
Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
Josefa González, Talia L. Karasov, Philipp W. Messer, Dmitri A. Petrov
PLoS Genet. 2010 April; 6(4): e1000905. Published online 2010 April 8. doi: 10.1371/journal.pgen.1000905
PMCID:
PMC2851572
Abstract Full Text PDF–325K Supplementary Material
A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5' truncations
Eugene A Gladyshev, Irina R Arkhipova
Mob DNA. 2010; 1: 12. Published online 2010 April 1. doi: 10.1186/1759-8753-1-12
PMCID:
PMC2861651
Abstract Full Text PDF–594K Supplementary Material
Gag Proteins of Drosophila Telomeric Retrotransposons: Collaborative Targeting to Chromosome Ends
Adelaide M. Fuller, Elizabeth G. Cook, Kerry J. Kelley, Mary-Lou Pardue
Genetics. 2010 March; 184(3): 629–636. doi: 10.1534/genetics.109.109744
PMCID:
PMC2845333
Abstract Full Text PDF–1.4M
Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
Jian Lu, Andrew G. Clark
Genome Res. 2010 February; 20(2): 212–227. doi: 10.1101/gr.095406.109
PMCID:
PMC2813477
Abstract Full Text PDF–508K
Contrasting Patterns of Transposable Element Insertions in Drosophila Heat-Shock Promoters
Robert A. Haney, Martin E. Feder
PLoS One. 2009; 4(12): e8486. Published online 2009 December 29. doi: 10.1371/journal.pone.0008486
PMCID:
PMC2793543
Abstract Full Text PDF–783K Supplementary Material
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
Florian Maumus, Andrew E Allen, Corinne Mhiri, Hanhua Hu, Kamel Jabbari, Assaf Vardi, Marie-Angèle Grandbastien, Chris Bowler
BMC Genomics. 2009; 10: 624. Published online 2009 December 22. doi: 10.1186/1471-2164-10-624
PMCID:
PMC2806351
Abstract Full Text PDF–3.3M Supplementary Material
The Transposon Galileo Generates Natural Chromosomal Inversions in Drosophila by Ectopic Recombination
Alejandra Delprat, Bàrbara Negre, Marta Puig, Alfredo Ruiz
PLoS One. 2009; 4(11): e7883. Published online 2009 November 18. doi: 10.1371/journal.pone.0007883
PMCID:
PMC2775673
Abstract Full Text PDF–714K Supplementary Material
Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes
Nicole de la Chaux, Andreas Wagner
BMC Evol Biol. 2009; 9: 205. Published online 2009 August 18. doi: 10.1186/1471-2148-9-205
PMCID:
PMC3087523
Abstract Full Text PDF–1.7M Supplementary Material
Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes
Cédric Feschotte, Umeshkumar Keswani, Nirmal Ranganathan, Marcel L. Guibotsy, David Levine
Genome Biol Evol. 2009; 1: 205–220. Published online 2009 July 23. doi: 10.1093/gbe/evp023
PMCID:
PMC2817418
Abstract Full Text PDF–516K Supplementary Material
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes
Adriana Granzotto, Fabrício R Lopes, Emmanuelle Lerat, Cristina Vieira, Claudia MA Carareto
BMC Evol Biol. 2009; 9: 174. Published online 2009 July 22. doi: 10.1186/1471-2148-9-174
PMCID:
PMC3087515
Abstract Full Text PDF–1.3M Supplementary Material
The Adaptive Role of Transposable Elements in the Drosophila Genome
Josefa González, Dmitri A. Petrov
Gene. Author manuscript; available in PMC 2010 December 15.
Published in final edited form as: Gene. 2009 December 15; 448(2): 124–133. Published online 2009 June 23. doi: 10.1016/j.gene.2009.06.008
PMCID:
PMC2784284
Abstract Full Text PDF–458K
Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila
Deborah E Stage, Thomas H Eickbush
Genome Biol. 2009; 10(5): R49. Published online 2009 May 5. doi: 10.1186/gb-2009-10-5-r49
PMCID:
PMC2718515
Abstract Full Text PDF–984K Supplementary Material
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
Carolina Bartolomé, Xabier Bello, Xulio Maside
Genome Biol. 2009; 10(2): R22. Published online 2009 February 18. doi: 10.1186/gb-2009-10-2-r22
Correction in:
Genome Biol. 2011; 12(11): 411.
PMCID:
PMC2688281
Abstract Full Text PDF–1.3M Supplementary Material Correction
Automated paleontology of repetitive DNA with REANNOTATE
Vini Pereira
BMC Genomics. 2008; 9: 614. Published online 2008 December 18. doi: 10.1186/1471-2164-9-614
PMCID:
PMC2672092
Abstract Full Text PDF–521K Supplementary Material
High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
Josefa González, Kapa Lenkov, Mikhail Lipatov, J. Michael Macpherson, Dmitri A Petrov
PLoS Biol. 2008 October; 6(10): e251. Published online 2008 October 21. doi: 10.1371/journal.pbio.0060251
PMCID:
PMC2570423
Abstract Full Text PDF–445K Supplementary Material
Tools for simulating evolution of aligned genomic regions with integrated parameter estimation
Avinash Varadarajan, Robert K Bradley, Ian H Holmes
Genome Biol. 2008; 9(10): R147. Published online 2008 October 8. doi: 10.1186/gb-2008-9-10-r147
PMCID:
PMC2760874
Abstract Full Text PDF–425K
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