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Nucleic Acids Res. Jan 1, 1997; 25(1): 109–111.
PMCID: PMC146422

The RDP (Ribosomal Database Project).

Abstract

The Ribosomal Database Project (RDP) is a curated database that offers ribosome-related data, analysis services and associated computer programs. The offerings include phylogenetically ordered alignments of ribosomal RNA (rRNA) sequences, derived phylogenetic trees, rRNA secondary structure diagrams, and various software for handling, analyzing and displaying alignments and trees. The data are available via anonymous FTP (rdp.life.uiuc.edu), electronic mail (server@rdp.life.uiuc.edu), gopher (rdpgopher.life.uiuc.edu) and WWW (http://rdpwww.life.uiuc.edu/ ). The electronic mail and WWW servers provide ribosomal probe checking, approximate phylogenetic placement of user-submitted sequences, screening for possible chimeric rRNA sequences, automated alignment, and a suggested placement of an unknown sequence on an existing phylogenetic tree.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.
  • Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR. The Ribosomal Database Project (RDP). Nucleic Acids Res. 1996 Jan 1;24(1):82–85. [PMC free article] [PubMed]
  • Benson DA, Boguski M, Lipman DJ, Ostell J. GenBank. Nucleic Acids Res. 1996 Jan 1;24(1):1–5. [PMC free article] [PubMed]
  • Rodriguez-Tomé P, Stoehr PJ, Cameron GN, Flores TP. The European Bioinformatics Institute (EBI) databases. Nucleic Acids Res. 1996 Jan 1;24(1):6–12. [PMC free article] [PubMed]
  • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17(6):368–376. [PubMed]
  • Olsen GJ, Matsuda H, Hagstrom R, Overbeek R. fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci. 1994 Feb;10(1):41–48. [PubMed]

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Related citations in PubMed

  • The Ribosomal Database Project (RDP).[Nucleic Acids Res. 1996]
    Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR. Nucleic Acids Res. 1996 Jan 1; 24(1):82-5.
  • The Ribosomal Database Project.[Nucleic Acids Res. 1994]
    Maidak BL, Larsen N, McCaughey MJ, Overbeek R, Olsen GJ, Fogel K, Blandy J, Woese CR. Nucleic Acids Res. 1994 Sep; 22(17):3485-7.
  • A new version of the RDP (Ribosomal Database Project).[Nucleic Acids Res. 1999]
    Maidak BL, Cole JR, Parker CT Jr, Garrity GM, Larsen N, Li B, Lilburn TG, McCaughey MJ, Olsen GJ, Overbeek R, et al. Nucleic Acids Res. 1999 Jan 1; 27(1):171-3.
  • The ribosomal database project.[Nucleic Acids Res. 1993]
    Larsen N, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke TJ, Marsh TL, Woese CR. Nucleic Acids Res. 1993 Jul 1; 21(13):3021-3.
  • The RDP-II (Ribosomal Database Project).[Nucleic Acids Res. 2001]
    Maidak BL, Cole JR, Lilburn TG, Parker CT Jr, Saxman PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM. Nucleic Acids Res. 2001 Jan 1; 29(1):173-4.
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