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The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders
G Lynn Law, Kellie S Bickel, Vivian L MacKay, David R Morris
Genome Biol. 2005; 6(13): R111. Published online 2006 January 3. doi: 10.1186/gb-2005-6-13-r111
PMCID:
PMC1414110
Abstract Full Text PDF–8.5M Supplementary Material

Is Cited by the Following 19 Articles in this Archive:

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
M Violet Lee, Scott E Topper, Shane L Hubler, James Hose, Craig D Wenger, Joshua J Coon, Audrey P Gasch
Mol Syst Biol. 2011; 7: 514. Published online 2011 July 19. doi: 10.1038/msb.2011.48
PMCID:
PMC3159980
Abstract Full Text PDF–1.8M Supplementary Material
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing
Jordi Durban, Paula Juárez, Yamileth Angulo, Bruno Lomonte, Marietta Flores-Diaz, Alberto Alape-Girón, Mahmood Sasa, Libia Sanz, José M Gutiérrez, Joaquín Dopazo, Ana Conesa, Juan J Calvete
BMC Genomics. 2011; 12: 259. Published online 2011 May 23. doi: 10.1186/1471-2164-12-259
PMCID:
PMC3128066
Abstract Full Text PDF–1.7M Supplementary Material
Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast
Yu-Ching Huang, Hung-Ta Chen, Shu-Chun Teng
RNA. 2010 November; 16(11): 2085–2093. doi: 10.1261/rna.2177410
PMCID:
PMC2957049
Abstract Full Text PDF–610K
Estrogen Coordinates Translation and Transcription, Revealing a Role for NRSF in Human Breast Cancer Cells
Michael W. Bronson, Sara Hillenmeyer, Richard W. Park, Alexander S. Brodsky
Mol Endocrinol. 2010 June; 24(6): 1120–1135. Published online 2010 April 14. doi: 10.1210/me.2009-0436
PMCID:
PMC2875799
Abstract Full Text Supplementary Material
Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns
Karen R. Christie, Eurie L. Hong, J. Michael Cherry
Trends Microbiol. Author manuscript; available in PMC 2011 March 15.
Published in final edited form as: Trends Microbiol. 2009 July; 17(7): 286–294. Published online 2009 July 2. doi: 10.1016/j.tim.2009.04.005
PMCID:
PMC3057094
Abstract Full Text PDF–273K
Ribosomal footprints on a transcriptome landscape
David R Morris
Genome Biol. 2009; 10(4): 215. Published online 2009 April 28. doi: 10.1186/gb-2009-10-4-215
PMCID:
PMC2688920
Abstract Full Text PDF–100K
Functionally distinct isoforms of Cik1 are differentially regulated by APC/C-mediated proteolysis
Jennifer A. Benanti, Mary E. Matyskiela, David O. Morgan, David P. Toczyski
Mol Cell. Author manuscript; available in PMC 2010 June 10.
Published in final edited form as: Mol Cell. 2009 March 13; 33(5): 581–590. doi: 10.1016/j.molcel.2009.01.032
PMCID:
PMC2883288
Abstract Full Text PDF–2.8M Supplementary Material
Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome
Vanessa Cheung, Gordon Chua, Nizar N Batada, Christian R Landry, Stephen W Michnick, Timothy R Hughes, Fred Winston
PLoS Biol. 2008 November; 6(11): e277. Published online 2008 November 11. doi: 10.1371/journal.pbio.0060277
PMCID:
PMC2581627
Abstract Full Text PDF–552K Supplementary Material
Yeast translational response to high salinity: Global analysis reveals regulation at multiple levels
Daniel Melamed, Lilach Pnueli, Yoav Arava
RNA. 2008 July; 14(7): 1337–1351. doi: 10.1261/rna.864908
PMCID:
PMC2441982
Abstract Full Text PDF–972K
Oxygen-dependent, alternative promoter controls translation of tco1+ in fission yeast
Alfica Sehgal, Bridget T. Hughes, Peter J. Espenshade
Nucleic Acids Res. 2008 April; 36(6): 2024–2031. Published online 2008 April. doi: 10.1093/nar/gkn027
PMCID:
PMC2330238
Abstract Full Text PDF–6.6M
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea
Christian Lange, Alexander Zaigler, Mathias Hammelmann, Jens Twellmeyer, Günter Raddatz, Stephan C Schuster, Dieter Oesterhelt, Jörg Soppa
BMC Genomics. 2007; 8: 415. Published online 2007 November 12. doi: 10.1186/1471-2164-8-415
PMCID:
PMC3225822
Abstract Full Text PDF–665K Supplementary Material
Common gene expression strategies revealed by genome-wide analysis in yeast
José García-Martínez, Fernando González-Candelas, José E Pérez-Ortín
Genome Biol. 2007; 8(10): R222. Published online 2007 October 19. doi: 10.1186/gb-2007-8-10-r222
PMCID:
PMC2246296
Abstract Full Text PDF–674K Supplementary Material
Positive selection for unpreferred codon usage in eukaryotic genomes
Daniel E Neafsey, James E Galagan
BMC Evol Biol. 2007; 7: 119. Published online 2007 July 18. doi: 10.1186/1471-2148-7-119
PMCID:
PMC1936986
Abstract Full Text PDF–321K Supplementary Material
Function and Regulation in MAPK Signaling Pathways: Lessons Learned from the Yeast Saccharomyces cerevisiae
Raymond E. Chen, Jeremy Thorner
Biochim Biophys Acta. Author manuscript; available in PMC 2007 October 16.
Published in final edited form as: Biochim Biophys Acta. 2007 August; 1773(8): 1311–1340. Published online 2007 May 22. doi: 10.1016/j.bbamcr.2007.05.003
PMCID:
PMC2031910
Abstract Full Text PDF–1.3M
A Network of Multiple Regulatory Layers Shapes Gene Expression in Fission Yeast
Daniel H. Lackner, Traude H. Beilharz, Samuel Marguerat, Juan Mata, Stephen Watt, Falk Schubert, Thomas Preiss, Jürg Bähler
Mol Cell. 2007 April 13; 26(1): 145–155. doi: 10.1016/j.molcel.2007.03.002
PMCID:
PMC1885965
Abstract Full Text Supplementary Material
Posttranscriptional Expression Regulation: What Determines Translation Rates?
Regina Brockmann, Andreas Beyer, Jürgen J Heinisch, Thomas Wilhelm
PLoS Comput Biol. 2007 March; 3(3): e57. Published online 2007 March 23. doi: 10.1371/journal.pcbi.0030057
PMCID:
PMC1829480
Abstract Full Text PDF–196K Supplementary Material
Identification of Translational Regulation Target Genes during Filamentous Growth in Saccharomyces cerevisiae: Regulatory Role of Caf20 and Dhh1
Young-Un Park, Hyangsuk Hur, Minhan Ka, Jinmi Kim
Eukaryot Cell. 2006 December; 5(12): 2120–2127. Published online 2006 October 13. doi: 10.1128/EC.00121-06
PMCID:
PMC1694813
Abstract Full Text PDF–428K
Role of the Transcription Activator Ste12p as a Repressor of PRY3 Expression
Kellie S. Bickel, David R. Morris
Mol Cell Biol. 2006 November; 26(21): 7901–7912. Published online 2006 August 28. doi: 10.1128/MCB.01004-06
PMCID:
PMC1636733
Abstract Full Text PDF–528K
Comprehensive identification of Drosophila dorsal–ventral patterning genes using a whole-genome tiling array
Frédéric Biemar, David A. Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, J. Robert Manak, Michael S. Levine
Proc Natl Acad Sci U S A. 2006 August 22; 103(34): 12763–12768. Published online 2006 August 14. doi: 10.1073/pnas.0604484103
PMCID:
PMC1636694
Abstract Full Text PDF–2.0M Supplementary Material
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