My NCBISign In
Primary and secondary transcriptional effects in the developing human Down syndrome brain and heart
Rong Mao, Xiaowen Wang, Edward L Spitznagel, Jr, Laurence P Frelin, Jason C Ting, Huashi Ding, Jung-whan Kim, Ingo Ruczinski, Thomas J Downey, Jonathan Pevsner
Genome Biol. 2005; 6(13): R107. Published online 2005 December 16. doi: 10.1186/gb-2005-6-13-r107
PMCID:
PMC1414106
Abstract Full Text PDF–431K Supplementary Material

Is Cited by the Following 25 Articles in this Archive:

Brain Phenotype of Transgenic Mice Overexpressing Cystathionine β-Synthase
Vinciane Régnier, Jean-Marie Billard, Sapna Gupta, Brigitte Potier, Stéphanie Woerner, Evelyne Paly, Aurélie Ledru, Sabrina David, Sabrina Luilier, Jean-Charles Bizot, Guido Vacano, Jan P. Kraus, David Patterson, Warren D. Kruger, Jean M. Delabar, Jaqueline London
PLoS One. 2012; 7(1): e29056. Published online 2012 January 12. doi: 10.1371/journal.pone.0029056
PMCID:
PMC3257219
Abstract Full Text PDF–571K Supplementary Material
Supratentorial and spinal pediatric ependymomas display a hypermethylated phenotype which includes the loss of tumor suppressor genes involved in the control of cell growth and death
Hazel A. Rogers, John-Paul Kilday, Cerys Mayne, Jennifer Ward, Martyna Adamowicz-Brice, Ed C. Schwalbe, Steven C. Clifford, Beth Coyle, Richard G. Grundy
Acta Neuropathol. 2012 May; 123(5): 711–725. Published online 2011 November 23. doi: 10.1007/s00401-011-0904-1
PMCID:
PMC3316934
Abstract Full Text PDF–968K Supplementary Material
Integrated Analysis of Gene Expression and Copy Number Data on Gene Shaving using Independent Component Analysis
Jinhua Sheng, Hong-Wen Deng, Vince Calhoun, Yu-Ping Wang
IEEE/ACM Trans Comput Biol Bioinform. Author manuscript; available in PMC 2011 December 3.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov-Dec; 8(6): 1568–1579. doi: 10.1109/TCBB.2011.71
PMCID:
PMC3146966
Abstract Full Text PDF–9.2M
Gene Expression Profiling in a Mouse Model Identifies Fetal Liver- and Placenta-Derived Potential Biomarkers for Down Syndrome Screening
Jeroen L. A. Pennings, Wendy Rodenburg, Sandra Imholz, Maria P. H. Koster, Conny T. M. van Oostrom, Timo M. Breit, Peter C. J. I. Schielen, Annemieke de Vries
PLoS One. 2011; 6(4): e18866. Published online 2011 April 14. doi: 10.1371/journal.pone.0018866
PMCID:
PMC3077415
Abstract Full Text PDF–338K Supplementary Material
Altered DNA Methylation in Leukocytes with Trisomy 21
Kristi Kerkel, Nicole Schupf, Kota Hatta, Deborah Pang, Martha Salas, Alexander Kratz, Mark Minden, Vundavalli Murty, Warren B. Zigman, Richard P. Mayeux, Edmund C. Jenkins, Ali Torkamani, Nicholas J. Schork, Wayne Silverman, B. Anne Croy, Benjamin Tycko
PLoS Genet. 2010 November; 6(11): e1001212. Published online 2010 November 18. doi: 10.1371/journal.pgen.1001212
PMCID:
PMC2987931
Abstract Full Text PDF–715K Supplementary Material
Ohnologs in the human genome are dosage balanced and frequently associated with disease
Takashi Makino, Aoife McLysaght
Proc Natl Acad Sci U S A. 2010 May 18; 107(20): 9270–9274. Published online 2010 May 3. doi: 10.1073/pnas.0914697107
PMCID:
PMC2889102
Abstract Full Text PDF–210K Supplementary Material
Aneuploidy Causes Tissue-Specific Qualitative Changes in Global Gene Expression Patterns in Maize
Irina Makarevitch, Carolyn Harris
Plant Physiol. 2010 February; 152(2): 927–938. doi: 10.1104/pp.109.150466
PMCID:
PMC2815861
Abstract Full Text PDF–519K Supplementary Material
Upregulation of three Drosophila homologs of human chromosome 21 genes alters synaptic function: Implications for Down syndrome
Karen T. Chang, Kyung-Tai Min
Proc Natl Acad Sci U S A. 2009 October 6; 106(40): 17117–17122. doi: 10.1073/pnas.0904397106
PMCID:
PMC2761307
Abstract Full Text PDF–664K Supplementary Material
Evolution of the neocortex: Perspective from developmental biology
Pasko Rakic
Nat Rev Neurosci. Author manuscript; available in PMC 2010 August 2.
Published in final edited form as: Nat Rev Neurosci. 2009 October; 10(10): 724–735. doi: 10.1038/nrn2719
PMCID:
PMC2913577
Abstract Full Text PDF–3.3M
A new mouse model for the trisomy of the Abcg1–U2af1 region reveals the complexity of the combinatorial genetic code of down syndrome
Patricia Lopes Pereira, Laetitia Magnol, Ignasi Sahún, Véronique Brault, Arnaud Duchon, Paola Prandini, Agnès Gruart, Jean-Charles Bizot, Bernadette Chadefaux-Vekemans, Samuel Deutsch, Fabrice Trovero, José María Delgado-García, Stylianos E. Antonarakis, Mara Dierssen, Yann Herault
Hum Mol Genet. 2009 December 15; 18(24): 4756–4769. Published online 2009 September 26. doi: 10.1093/hmg/ddp438
PMCID:
PMC2778371
Abstract Full Text PDF–527K Supplementary Material
A Critical Period in Cortical Interneuron Neurogenesis in Down Syndrome Revealed by Human Neural Progenitor Cells
Anita Bhattacharyya, Erin McMillan, Serene I. Chen, Kyle Wallace, Clive N. Svendsen
Dev Neurosci. 2009 November; 31(6): 497–510. Published online 2009 September 9. doi: 10.1159/000236899
PMCID:
PMC2818457
Abstract Full Text PDF–480K
Age-dependent dysregulation of brain amyloid precursor protein in the Ts65Dn Down syndrome mouse model
Jennifer H.K. Choi, Jason D. Berger, Matthew J. Mazzella, Jose Morales-Corraliza, Anne M. Cataldo, Ralph A. Nixon, Stephen D. Ginsberg, Efrat Levy, Paul M. Mathews
J Neurochem. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: J Neurochem. 2009 September; 110(6): 1818–1827. Published online 2009 July 10. doi: 10.1111/j.1471-4159.2009.06277.x
PMCID:
PMC2744432
Abstract Full Text PDF–220K
Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Renée X Menezes, Marten Boetzer, Melle Sieswerda, Gert-Jan B van Ommen, Judith M Boer
BMC Bioinformatics. 2009; 10: 203. Published online 2009 June 29. doi: 10.1186/1471-2105-10-203
PMCID:
PMC2753845
Abstract Full Text PDF–1.1M Supplementary Material
Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses
Donna K. Slonim, Keiko Koide, Kirby L. Johnson, Umadevi Tantravahi, Janet M. Cowan, Zina Jarrah, Diana W. Bianchi
Proc Natl Acad Sci U S A. 2009 June 9; 106(23): 9425–9429. Published online 2009 May 27. doi: 10.1073/pnas.0903909106
PMCID:
PMC2687148
Abstract Full Text PDF–322K Supplementary Material
Gene expression signature of cerebellar hypoplasia in a mouse model of Down syndrome during postnatal development
Julien Laffaire, Isabelle Rivals, Luce Dauphinot, Fabien Pasteau, Rosine Wehrle, Benoit Larrat, Tania Vitalis, Randal X Moldrich, Jean Rossier, Ralph Sinkus, Yann Herault, Isabelle Dusart, Marie-Claude Potier
BMC Genomics. 2009; 10: 138. Published online 2009 March 30. doi: 10.1186/1471-2164-10-138
PMCID:
PMC2678156
Abstract Full Text PDF–1.3M Supplementary Material
Effects of Aneuploidy on Genome Structure, Expression, and Interphase Organization in Arabidopsis thaliana
Bruno Huettel, David P. Kreil, Marjori Matzke, Antonius J. M. Matzke
PLoS Genet. 2008 October; 4(10): e1000226. Published online 2008 October 17. doi: 10.1371/journal.pgen.1000226
PMCID:
PMC2562519
Abstract Full Text PDF–479K Supplementary Material
Inducing Segmental Aneuploid Mosaicism in the Mouse Through Targeted Asymmetric Sister Chromatid Event of Recombination
Arnaud Duchon, Vanessa Besson, Patricia Lopes Pereira, Laetitia Magnol, Yann Hérault
Genetics. 2008 September; 180(1): 51–59. doi: 10.1534/genetics.108.092312
PMCID:
PMC2535701
Abstract Full Text PDF–1.6M
Profiling expression changes caused by a segmental aneuploid in maize
Irina Makarevitch, Ronald L Phillips, Nathan M Springer
BMC Genomics. 2008; 9: 7. Published online 2008 January 10. doi: 10.1186/1471-2164-9-7
PMCID:
PMC2254597
Abstract Full Text PDF–842K Supplementary Material
Altered expression of mitochondrial and extracellular matrix genes in the heart of human fetuses with chromosome 21 trisomy
Anna Conti, Floriana Fabbrini, Paola D'Agostino, Rosa Negri, Dario Greco, Rita Genesio, Maria D'Armiento, Carlo Olla, Dario Paladini, Mariastella Zannini, Lucio Nitsch
BMC Genomics. 2007; 8: 268. Published online 2007 August 7. doi: 10.1186/1471-2164-8-268
PMCID:
PMC1964766
Abstract Full Text PDF–1.0M Supplementary Material
The power of comparative and developmental studies for mouse models of Down syndrome
Clara S. Moore, Randall J. Roper
Mamm Genome. 2007 July; 18(6-7): 431–443. Published online 2007 July 26. doi: 10.1007/s00335-007-9030-8
PMCID:
PMC1998891
Abstract Full Text PDF–314K
Classification of Human Chromosome 21 Gene-Expression Variations in Down Syndrome: Impact on Disease Phenotypes
E.  Aït Yahya-Graison, J.  Aubert, L.  Dauphinot, I.  Rivals, M.  Prieur, G.  Golfier, J.  Rossier, L.  Personnaz, N.  Créau, H.  Bléhaut, S.  Robin, J. M.  Delabar, M.-C.  Potier
Am J Hum Genet. 2007 September; 81(3): 475–491. Published online 2007 July 19.
PMCID:
PMC1950826
Abstract Full Text PDF–437K
Natural Gene-Expression Variation in Down Syndrome Modulates the Outcome of Gene-Dosage Imbalance
Paola  Prandini, Samuel  Deutsch, Robert  Lyle, Maryline  Gagnebin, Celine Delucinge  Vivier, Mauro  Delorenzi, Corinne  Gehrig, Patrick  Descombes, Stephanie  Sherman, Franca Dagna  Bricarelli, Chiara  Baldo, Antonio  Novelli, Bruno  Dallapiccola, Stylianos E.  Antonarakis
Am J Hum Genet. 2007 August; 81(2): 252–263. Published online 2007 June 20.
PMCID:
PMC1950802
Abstract Full Text PDF–1.0M
Gene expression variation in Down's syndrome mice allows prioritization of candidate genes
Marc Sultan, Ilaria Piccini, Daniela Balzereit, Ralf Herwig, Nidhi G Saran, Hans Lehrach, Roger H Reeves, Marie-Laure Yaspo
Genome Biol. 2007; 8(5): R91. Published online 2007 May 25. doi: 10.1186/gb-2007-8-5-r91
PMCID:
PMC1929163
Abstract Full Text PDF–621K Supplementary Material
Validation of Computational Methods in Genomics
Edward R Doughtery, Hua Jianping, Michael L Bittner
Curr Genomics. 2007 March; 8(1): 1–19.
PMCID:
PMC2474684
Abstract Full Text PDF–1.2M
Cell type-specific over-expression of chromosome 21 genes in fibroblasts and fetal hearts with trisomy 21
Chi-Ming Li, Meirong Guo, Martha Salas, Nicole Schupf, Wayne Silverman, Warren B Zigman, Sameera Husain, Dorothy Warburton, Harshwardhan Thaker, Benjamin Tycko
BMC Med Genet. 2006; 7: 24. Published online 2006 March 15. doi: 10.1186/1471-2350-7-24
PMCID:
PMC1435874
Abstract Full Text PDF–887K Supplementary Material
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