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Ulysses - an application for the projection of molecular interactions across species
Danielle Kemmer, Yong Huang, Sohrab P Shah, Jonathan Lim, Jochen Brumm, Macaire MS Yuen, John Ling, Tao Xu, Wyeth W Wasserman, BF Francis Ouellette
Genome Biol. 2005; 6(12): R106. Published online 2005 December 2. doi: 10.1186/gb-2005-6-12-r106
PMCID:
PMC1414088
Abstract Full Text PDF–841K Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
Homology Inference of Protein-Protein Interactions via Conserved Binding Sites
Manoj Tyagi, Ratna R. Thangudu, Dachuan Zhang, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko
PLoS One. 2012; 7(1): e28896. Published online 2012 January 31. doi: 10.1371/journal.pone.0028896
PMCID:
PMC3269416
Abstract Full Text PDF–421K Supplementary Material
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins
Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko
Nucleic Acids Res. 2012 January; 40(D1): D834–D840. Published online 2011 November 17. doi: 10.1093/nar/gkr997
PMCID:
PMC3245142
Abstract Full Text PDF–5.2M
Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping
Giuseppe Gallone, T Ian Simpson, J Douglas Armstrong, Andrew P Jarman
BMC Bioinformatics. 2011; 12: 289. Published online 2011 July 18. doi: 10.1186/1471-2105-12-289
PMCID:
PMC3161927
Abstract Full Text PDF–1.0M Supplementary Material
Signalogs: Orthology-Based Identification of Novel Signaling Pathway Components in Three Metazoans
Tamás Korcsmáros, Máté S. Szalay, Petra Rovó, Robin Palotai, Dávid Fazekas, Katalin Lenti, Illés J. Farkas, Péter Csermely, Tibor Vellai
PLoS One. 2011; 6(5): e19240. Published online 2011 May 3. doi: 10.1371/journal.pone.0019240
PMCID:
PMC3086880
Abstract Full Text PDF–1024K Supplementary Material
POINeT: protein interactome with sub-network analysis and hub prioritization
Sheng-An Lee, Chen-Hsiung Chan, Tzu-Chi Chen, Chia-Ying Yang, Kuo-Chuan Huang, Chi-Hung Tsai, Jin-Mei Lai, Feng-Sheng Wang, Cheng-Yan Kao, Chi-Ying F Huang
BMC Bioinformatics. 2009; 10: 114. Published online 2009 April 21. doi: 10.1186/1471-2105-10-114
PMCID:
PMC2683814
Abstract Full Text PDF–1.4M
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions
Sheng-An Lee, Cheng-hsiung Chan, Chi-Hung Tsai, Jin-Mei Lai, Feng-Sheng Wang, Cheng-Yan Kao, Chi-Ying F Huang
BMC Bioinformatics. 2008; 9(Suppl 12): S11. Published online 2008 December 12. doi: 10.1186/1471-2105-9-S12-S11
PMCID:
PMC2638151
Abstract Full Text PDF–715K Supplementary Material
Interspecies data mining to predict novel ING-protein interactions in human
Paul MK Gordon, Mohamed A Soliman, Pinaki Bose, Quang Trinh, Christoph W Sensen, Karl Riabowol
BMC Genomics. 2008; 9: 426. Published online 2008 September 18. doi: 10.1186/1471-2164-9-426
PMCID:
PMC2565686
Abstract Full Text PDF–2.3M Supplementary Material
Prediction of Protein-protein Interactions on the Basis of Evolutionary Conservation of Protein Functions
Ekaterina Kotelnikova, Andrey Kalinin, Anton Yuryev, Sergei Maslov
Evol Bioinform Online. 2007; 3: 197–206. Published online 2007 August 8.
PMCID:
PMC2684133
Abstract Full Text PDF–445K
Probabilistic prediction and ranking of human protein-protein interactions
Michelle S Scott, Geoffrey J Barton
BMC Bioinformatics. 2007; 8: 239. Published online 2007 July 5. doi: 10.1186/1471-2105-8-239
PMCID:
PMC1939716
Abstract Full Text PDF–532K Supplementary Material
An evaluation of human protein-protein interaction data in the public domain
Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey
BMC Bioinformatics. 2006; 7(Suppl 5): S19. Published online 2006 December 18. doi: 10.1186/1471-2105-7-S5-S19
PMCID:
PMC1764475
Abstract Full Text PDF–291K
Protein–Protein Interactions More Conserved within Species than across Species
Sven Mika, Burkhard Rost
PLoS Comput Biol. 2006 July; 2(7): e79. Prepublished online 2006 May 18. Published online 2006 July 21. doi: 10.1371/journal.pcbi.0020079
PMCID:
PMC1513270
Abstract Full Text PDF–538K Supplementary Material
NovelFam3000 – Uncharacterized human protein domains conserved across model organisms
Danielle Kemmer, Raf M Podowski, David Arenillas, Jonathan Lim, Emily Hodges, Peggy Roth, Erik LL Sonnhammer, Christer Höög, Wyeth W Wasserman
BMC Genomics. 2006; 7: 48. Published online 2006 March 13. doi: 10.1186/1471-2164-7-48
PMCID:
PMC1440326
Abstract Full Text PDF–1.4M Supplementary Material
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