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Comprehensive copy number profiles of breast cancer cell model genomes
Ashleen Shadeo, Wan L Lam
Breast Cancer Res. 2006; 8(1): R9. Published online 2006 January 3. doi: 10.1186/bcr1370
PMCID:
PMC1413994
Abstract Full Text PDF–1003K Supplementary Material
 Is Cited by the Following 20 Articles in this Archive:
Quantification and clinical relevance of gene amplification at chromosome 17q12-q21 in human epidermal growth factor receptor 2-amplified breast cancers
Pierre-Jean Lamy, Frédéric Fina, Caroline Bascoul-Mollevi, Anne-Claire Laberenne, Pierre-Marie Martin, L'Houcine Ouafik, William Jacot
Breast Cancer Res. 2011; 13(1): R15. Published online 2011 February 2. doi: 10.1186/bcr2824
PMCID:
PMC3109584
Abstract Full Text PDF–335K
Integrative model of genomic factors for determining binding site selection by estrogen receptor-α
Roy Joseph, Yuriy L Orlov, Mikael Huss, Wenjie Sun, Say Li Kong, Leena Ukil, You Fu Pan, Guoliang Li, Michael Lim, Jane S Thomsen, Yijun Ruan, Neil D Clarke, Shyam Prabhakar, Edwin Cheung, Edison T Liu
Mol Syst Biol. 2010; 6: 456. Published online 2010 December 21. doi: 10.1038/msb.2010.109
PMCID:
PMC3018168
Abstract Full Text PDF–2.0M Supplementary Material
ZNF217 confers resistance to the pro-apoptotic signals of paclitaxel and aberrant expression of Aurora-A in breast cancer cells
Aurélie Thollet, Julie A Vendrell, Léa Payen, Sandra E Ghayad, Sabrina Ben Larbi, Evelyne Grisard, Colin Collins, Marie Villedieu, Pascale A Cohen
Mol Cancer. 2010; 9: 291. Published online 2010 November 8. doi: 10.1186/1476-4598-9-291
PMCID:
PMC2996367
Abstract Full Text PDF–1.9M
An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer
Raj Chari, Bradley P Coe, Emily A Vucic, William W Lockwood, Wan L Lam
BMC Syst Biol. 2010; 4: 67. Published online 2010 May 17. doi: 10.1186/1752-0509-4-67
PMCID:
PMC2880289
Abstract Full Text PDF–1.6M Supplementary Material
Activation of Estrogen-Responsive Genes Does Not Require Their Nuclear Co-Localization
Silvia Kocanova, Elizabeth A. Kerr, Sehrish Rafique, Shelagh Boyle, Elad Katz, Stephanie Caze-Subra, Wendy A. Bickmore, Kerstin Bystricky
PLoS Genet. 2010 April; 6(4): e1000922. Published online 2010 April 22. doi: 10.1371/journal.pgen.1000922
PMCID:
PMC2858706
Abstract Full Text PDF–3.7M Supplementary Material
Breast cancer cell lines carry cell line-specific genomic alterations that are distinct from aberrations in breast cancer tissues: Comparison of the CGH profiles between cancer cell lines and primary cancer tissues
Katumi Tsuji, Shigeto Kawauchi, Soichiro Saito, Tomoko Furuya, Kenzo Ikemoto, Motonao Nakao, Shigeru Yamamoto, Masaaki Oka, Takashi Hirano, Kohsuke Sasaki
BMC Cancer. 2010; 10: 15. Published online 2010 January 14. doi: 10.1186/1471-2407-10-15
PMCID:
PMC2836299
Abstract Full Text PDF–497K
Chimeric transcript discovery by paired-end transcriptome sequencing
Christopher A. Maher, Nallasivam Palanisamy, John C. Brenner, Xuhong Cao, Shanker Kalyana-Sundaram, Shujun Luo, Irina Khrebtukova, Terrence R. Barrette, Catherine Grasso, Jindan Yu, Robert J. Lonigro, Gary Schroth, Chandan Kumar-Sinha, Arul M. Chinnaiyan
Proc Natl Acad Sci U S A. 2009 July 28; 106(30): 12353–12358. Published online 2009 July 10. doi: 10.1073/pnas.0904720106
PMCID:
PMC2708976
Abstract Full Text PDF–793K Supplementary Material
ChIP-Seq of ERα and RNA polymerase II defines genes differentially responding to ligands
Willem-Jan Welboren, Marc A van Driel, Eva M Janssen-Megens, Simon J van Heeringen, Fred CGJ Sweep, Paul N Span, Hendrik G Stunnenberg
EMBO J. 2009 May 20; 28(10): 1418–1428. Published online 2009 April 4. doi: 10.1038/emboj.2009.88
PMCID:
PMC2688537
Abstract Full Text PDF–493K Supplementary Material
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
Oliver A. Hampton, Petra Den Hollander, Christopher A. Miller, David A. Delgado, Jian Li, Cristian Coarfa, Ronald A. Harris, Stephen Richards, Steven E. Scherer, Donna M. Muzny, Richard A. Gibbs, Adrian V. Lee, Aleksandar Milosavljevic
Genome Res. 2009 February; 19(2): 167–177. doi: 10.1101/gr.080259.108
PMCID:
PMC2652200
Abstract Full Text PDF–2.2M
Redefining prognostic factors for breast cancer: YB-1 is a stronger predictor of relapse and disease-specific survival than estrogen receptor or HER-2 across all tumor subtypes
Golareh Habibi, Samuel Leung, Jennifer H Law, Karen Gelmon, Hamid Masoudi, Dmitry Turbin, Michael Pollak, Torsten O Nielsen, David Huntsman, Sandra E Dunn
Breast Cancer Res. 2008; 10(5): R86. Published online 2008 October 16. doi: 10.1186/bcr2156
PMCID:
PMC2614522
Abstract Full Text PDF–668K Supplementary Material
High-resolution array CGH clarifies events occurring on 8p in carcinogenesis
Susanna L Cooke, Jessica CM Pole, Suet-Feung Chin, Ian O Ellis, Carlos Caldas, Paul AW Edwards
BMC Cancer. 2008; 8: 288. Published online 2008 October 7. doi: 10.1186/1471-2407-8-288
PMCID:
PMC2576333
Abstract Full Text PDF–505K Supplementary Material
Phenotypic and Genetic Characterization of Circulating Tumor Cells by Combining Immunomagnetic Selection and FICTION Techniques
María Campos, Celia Prior, Fernando Warleta, Isabel Zudaire, Jesús Ruíz-Mora, Raúl Catena, Alfonso Calvo, José J. Gaforio
J Histochem Cytochem. 2008 July; 56(7): 667–675. doi: 10.1369/jhc.2008.951111
PMCID:
PMC2430160
Abstract Full Text PDF–909K
High-resolution array comparative genomic hybridization of single micrometastatic tumor cells
Christine Fuhrmann, Oleg Schmidt-Kittler, Nikolas H. Stoecklein, Karina Petat-Dutter, Christian Vay, Kerstin Bockler, Richard Reinhardt, Thomas Ragg, Christoph A. Klein
Nucleic Acids Res. 2008 April; 36(7): e39. Published online 2008 April. doi: 10.1093/nar/gkn101
PMCID:
PMC2367728
Abstract Full Text PDF–1.0M
Normalization of array-CGH data: influence of copy number imbalances
Johan Staaf, Göran Jönsson, Markus Ringnér, Johan Vallon-Christersson
BMC Genomics. 2007; 8: 382. Published online 2007 October 22. doi: 10.1186/1471-2164-8-382
PMCID:
PMC2190775
Abstract Full Text PDF–17M
Malignant and benign ganglioglioma: A pathological and molecular study
Ajay Pandita, Anandh Balasubramaniam, Richard Perrin, Patrick Shannon, Abhijit Guha
Neuro-oncol. 2007 April; 9(2): 124–134. doi: 10.1215/15228517-2006-029
PMCID:
PMC1871674
Abstract Full Text PDF–4.7M
Automated array-CGH optimized for archival formalin-fixed, paraffin-embedded tumor material
Simon A Joosse, Erik H van Beers, Petra M Nederlof
BMC Cancer. 2007; 7: 43. Published online 2007 March 7. doi: 10.1186/1471-2407-7-43
PMCID:
PMC1829401
Abstract Full Text PDF–1.1M Supplementary Material
Genomic signatures of breast cancer metastasis
V. Urquidi, S. Goodison
Cytogenet Genome Res. Author manuscript; available in PMC 2008 September 21.
Published in final edited form as: Cytogenet Genome Res. 2007; 118(2-4): 116–129. doi: 10.1159/000108292
PMCID:
PMC2546496
Abstract Full Text PDF–99K
SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
Raj Chari, William W Lockwood, Bradley P Coe, Anna Chu, Devon Macey, Andrew Thomson, Jonathan J Davies, Calum MacAulay, Wan L Lam
BMC Genomics. 2006; 7: 324. Published online 2006 December 27. doi: 10.1186/1471-2164-7-324
PMCID:
PMC1764892
Abstract Full Text PDF–2.0M Supplementary Material
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
Richard M. Neve, Koei Chin, Jane Fridlyand, Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong, Terry Speed, Paul T. Spellman, Sandy DeVries, Anna Lapuk, Nick J. Wang, Wen-Lin Kuo, Jackie L. Stilwell, Daniel Pinkel, Donna G. Albertson, Frederic M. Waldman, Frank McCormick, Robert B. Dickson, Michael D. Johnson, Marc Lippman, Stephen Ethier, Adi Gazdar, Joe W. Gray
Cancer Cell. Author manuscript; available in PMC 2009 August 23.
Published in final edited form as: Cancer Cell. 2006 December; 10(6): 515–527. doi: 10.1016/j.ccr.2006.10.008
PMCID:
PMC2730521
Abstract Full Text PDF–4.9M
Array-CGH and breast cancer
Erik H van Beers, Petra M Nederlof
Breast Cancer Res. 2006; 8(3): 210. Published online 2006 June 30. doi: 10.1186/bcr1510
PMCID:
PMC1557735
Abstract Full Text PDF–89K
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