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Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts
Yudi Pawitan, Judith Bjöhle, Lukas Amler, Anna-Lena Borg, Suzanne Egyhazi, Per Hall, Xia Han, Lars Holmberg, Fei Huang, Sigrid Klaar, Edison T Liu, Lance Miller, Hans Nordgren, Alexander Ploner, Kerstin Sandelin, Peter M Shaw, Johanna Smeds, Lambert Skoog, Sara Wedrén, Jonas Bergh
Breast Cancer Res. 2005; 7(6): R953–R964. Published online 2005 October 3. doi: 10.1186/bcr1325
PMCID:
PMC1410752
Abstract Full Text PDF–1.4M Supplementary Material

Is Cited by the Following 132 Articles in this Archive:

A Critical Evaluation of Network and Pathway-Based Classifiers for Outcome Prediction in Breast Cancer
Christine Staiger, Sidney Cadot, Raul Kooter, Marcus Dittrich, Tobias Müller, Gunnar W. Klau, Lodewyk F. A. Wessels
PLoS One. 2012; 7(4): e34796. Published online 2012 April 27. doi: 10.1371/journal.pone.0034796
PMCID:
PMC3338754
Abstract Full Text PDF–1.2M Supplementary Material
Dormancy Signatures and Metastasis in Estrogen Receptor Positive and Negative Breast Cancer
Ryung S. Kim, Alvaro Avivar-Valderas, Yeriel Estrada, Paloma Bragado, Maria Soledad Sosa, Julio A. Aguirre-Ghiso, Jeffrey E. Segall
PLoS One. 2012; 7(4): e35569. Published online 2012 April 18. doi: 10.1371/journal.pone.0035569
PMCID:
PMC3329481
Abstract Full Text PDF–528K Supplementary Material
Improving biomarker list stability by integration of biological knowledge in the learning process
Tiziana Sanavia, Fabio Aiolli, Giovanni Da San Martino, Andrea Bisognin, Barbara Di Camillo
BMC Bioinformatics. 2012; 13(Suppl 4): S22. Published online 2012 March 28. doi: 10.1186/1471-2105-13-S4-S22
PMCID:
PMC3314566
Abstract Full Text PDF–507K
aThe dyslexia candidate gene DYX1C1 is a potential marker of poor survival in breast cancer
Gustaf Rosin, Ulf Hannelius, Linda Lindström, Per Hall, Jonas Bergh, Johan Hartman, Juha Kere
BMC Cancer. 2012; 12: 79. Published online 2012 February 29. doi: 10.1186/1471-2407-12-79
PMCID:
PMC3337251
Abstract Full Text PDF–1.0M
Shortening of 3′UTRs Correlates with Poor Prognosis in Breast and Lung Cancer
Antonio Lembo, Ferdinando Di Cunto, Paolo Provero
PLoS One. 2012; 7(2): e31129. Published online 2012 February 8. doi: 10.1371/journal.pone.0031129
PMCID:
PMC3275581
Abstract Full Text PDF–470K Supplementary Material
A Three-Gene Model to Robustly Identify Breast Cancer Molecular Subtypes
Benjamin Haibe-Kains, Christine Desmedt, Sherene Loi, Aedin C. Culhane, Gianluca Bontempi, John Quackenbush, Christos Sotiriou
J Natl Cancer Inst. 2012 February 22; 104(4): 311–325. Published online 2012 January 18. doi: 10.1093/jnci/djr545
PMCID:
PMC3283537
Free in PMC on 2013/02/22
Homogeneous Datasets of Triple Negative Breast Cancers Enable the Identification of Novel Prognostic and Predictive Signatures
Thomas Karn, Lajos Pusztai, Uwe Holtrich, Takayuki Iwamoto, Christine Y. Shiang, Marcus Schmidt, Volkmar Müller, Christine Solbach, Regine Gaetje, Lars Hanker, Andre Ahr, Cornelia Liedtke, Eugen Ruckhäberle, Manfred Kaufmann, Achim Rody
PLoS One. 2011; 6(12): e28403. Published online 2011 December 29. doi: 10.1371/journal.pone.0028403
PMCID:
PMC3248403
Abstract Full Text PDF–761K Supplementary Material
Maximizing biomarker discovery by minimizing gene signatures
Chang Chang, Junwei Wang, Chen Zhao, Jennifer Fostel, Weida Tong, Pierre R Bushel, Youping Deng, Lajos Pusztai, W Fraser Symmans, Tieliu Shi
BMC Genomics. 2011; 12(Suppl 5): S6. Published online 2011 December 23. doi: 10.1186/1471-2164-12-S5-S6
PMCID:
PMC3287502
Abstract Full Text PDF–811K Supplementary Material
The Influence of Feature Selection Methods on Accuracy, Stability and Interpretability of Molecular Signatures
Anne-Claire Haury, Pierre Gestraud, Jean-Philippe Vert
PLoS One. 2011; 6(12): e28210. Published online 2011 December 21. doi: 10.1371/journal.pone.0028210
PMCID:
PMC3244389
Abstract Full Text PDF–1023K
Reprogramming of the Tumor Microenvironment by Stromal Pten-regulated miR-320
A Bronisz, J Godlewski, JA Wallace, AS Merchant, MO Nowicki, H Mathsyaraja, R Srinivasan, AJ Trimboli, CK Martin, F Li, L Yu, SA Fernandez, T Pécot, TJ Rosol, S Cory, M Hallett, M Park, MG Piper, CB Marsh, LD Yee, RE Jimenez, G Nuovo, SE Lawler, EA Chiocca, G Leone, MC Ostrowski
Nat Cell Biol. Author manuscript; available in PMC 2012 August 1.
Published in final edited form as: Nat Cell Biol. 2011 December 18; 14(2): 159–167. doi: 10.1038/ncb2396
PMCID:
PMC3271169
Free in PMC on 2012/08/01
Variants on the promoter region of PTEN affect breast cancer progression and patient survival
Tuomas Heikkinen, Dario Greco, Liisa M Pelttari, Johanna Tommiska, Pia Vahteristo, Päivi Heikkilä, Carl Blomqvist, Kristiina Aittomäki, Heli Nevanlinna
Breast Cancer Res. 2011; 13(6): R130. Published online 2011 December 15. doi: 10.1186/bcr3076
PMCID:
PMC3326572
Abstract Full Text PDF–628K Supplementary Material
Multiple-input multiple-output causal strategies for gene selection
Gianluca Bontempi, Benjamin Haibe-Kains, Christine Desmedt, Christos Sotiriou, John Quackenbush
BMC Bioinformatics. 2011; 12: 458. Published online 2011 November 25. doi: 10.1186/1471-2105-12-458
PMCID:
PMC3323860
Abstract Full Text PDF–814K Supplementary Material
PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer
Luca Magnani, Elizabeth B. Ballantyne, Xiaoyang Zhang, Mathieu Lupien
PLoS Genet. 2011 November; 7(11): e1002368. Published online 2011 November 17. doi: 10.1371/journal.pgen.1002368
PMCID:
PMC3219601
Abstract Full Text PDF–1.0M Supplementary Material
Down-Regulation of ECRG4, a Candidate Tumor Suppressor Gene, in Human Breast Cancer
Renaud Sabatier, Pascal Finetti, José Adelaide, Arnaud Guille, Jean-Paul Borg, Max Chaffanet, Lydie Lane, Daniel Birnbaum, François Bertucci
PLoS One. 2011; 6(11): e27656. Published online 2011 November 16. doi: 10.1371/journal.pone.0027656
PMCID:
PMC3218004
Abstract Full Text PDF–356K Supplementary Material
Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform
M Abramovitz, B G Barwick, S Willis, B Young, C Catzavelos, Z Li, M Kodani, W Tang, M Bouzyk, C S Moreno, B Leyland-Jones
Br J Cancer. 2011 November 8; 105(10): 1574–1581. Published online 2011 November 8. doi: 10.1038/bjc.2011.355
PMCID:
PMC3242517
Free in PMC on 2012/11/08
Network Based Consensus Gene Signatures for Biomarker Discovery in Breast Cancer
Holger Fröhlich
PLoS One. 2011; 6(10): e25364. Published online 2011 October 25. doi: 10.1371/journal.pone.0025364
PMCID:
PMC3201953
Abstract Full Text PDF–1.1M Supplementary Material
Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome
David Venet, Jacques E. Dumont, Vincent Detours
PLoS Comput Biol. 2011 October; 7(10): e1002240. Published online 2011 October 20. doi: 10.1371/journal.pcbi.1002240
PMCID:
PMC3197658
Abstract Full Text PDF–443K Supplementary Material
A new gene expression signature, the ClinicoMolecular Triad Classification, may improve prediction and prognostication of breast cancer at the time of diagnosis
Dong-Yu Wang, Susan J Done, David R McCready, Scott Boerner, Supriya Kulkarni, Wey Liang Leong
Breast Cancer Res. 2011; 13(5): R92. Published online 2011 September 22. doi: 10.1186/bcr3017
PMCID:
PMC3262204
Abstract Full Text PDF–1.1M Supplementary Material
Breast tumors from CHEK2 1100delC-mutation carriers: genomic landscape and clinical implications
Taru A Muranen, Dario Greco, Rainer Fagerholm, Outi Kilpivaara, Kati Kämpjärvi, Kristiina Aittomäki, Carl Blomqvist, Päivi Heikkilä, Åke Borg, Heli Nevanlinna
Breast Cancer Res. 2011; 13(5): R90. Published online 2011 September 20. doi: 10.1186/bcr3015
PMCID:
PMC3262202
Abstract Full Text PDF–440K Supplementary Material
Sprouty 2 Is an Independent Prognostic Factor in Breast Cancer and May Be Useful in Stratifying Patients for Trastuzumab Therapy
Dana Faratian, Andrew H. Sims, Peter Mullen, Charlene Kay, InHwa Um, Simon P. Langdon, David J. Harrison
PLoS One. 2011; 6(8): e23772. Published online 2011 August 31. doi: 10.1371/journal.pone.0023772
PMCID:
PMC3166119
Abstract Full Text PDF–833K Supplementary Material
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response
Qiyuan Li, Aron C Eklund, Nicolai J Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L Richardson, Zoltan Szallasi
BMC Bioinformatics. 2011; 12: 310. Published online 2011 July 28. doi: 10.1186/1471-2105-12-310
PMCID:
PMC3155975
Abstract Full Text PDF–498K Supplementary Material
Inhibition of Matrix Metalloproteinase 14 (MMP-14)-mediated Cancer Cell Migration
Kevin Zarrabi, Antoine Dufour, Jian Li, Cem Kuscu, Ashleigh Pulkoski-Gross, Jizu Zhi, Youjun Hu, Nicole S. Sampson, Stanley Zucker, Jian Cao
J Biol Chem. 2011 September 23; 286(38): 33167–33177. Published online 2011 July 27. doi: 10.1074/jbc.M111.256644
PMCID:
PMC3190951
Free in PMC on 2012/09/23
Relationship of Extreme Chromosomal Instability with Long-term Survival in a Retrospective Analysis of Primary Breast Cancer
Rebecca Roylance, David Endesfelder, Patricia Gorman, Rebecca A. Burrell, Jil Sander, Ian Tomlinson, Andrew M Hanby, Valerie Speirs, Andrea L. Richardson, Nicolai J. Birkbak, Aron C. Eklund, Julian Downward, Maik Kschischo, Zoltan Szallasi, Charles Swanton
Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2012 April 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2011 October; 20(10): 2183–2194. Published online 2011 July 22. doi: 10.1158/1055-9965.EPI-11-0343
PMCID:
PMC3199437
Abstract Full Text PDF–1.2M Supplementary Material
A simple method for assigning genomic grade to individual breast tumours
Kristian Wennmalm, Jonas Bergh
BMC Cancer. 2011; 11: 306. Published online 2011 July 21. doi: 10.1186/1471-2407-11-306
PMCID:
PMC3150343
Abstract Full Text PDF–182K Supplementary Material
Kinome expression profiling and prognosis of basal breast cancers
Renaud Sabatier, Pascal Finetti, Emilie Mamessier, Stéphane Raynaud, Nathalie Cervera, Eric Lambaudie, Jocelyne Jacquemier, Patrice Viens, Daniel Birnbaum, François Bertucci
Mol Cancer. 2011; 10: 86. Published online 2011 July 21. doi: 10.1186/1476-4598-10-86
PMCID:
PMC3156788
Abstract Full Text PDF–553K Supplementary Material
Pro-invasion metastasis drivers in early stage melanoma are oncogenes
Kenneth L. Scott, Cristina Nogueira, Timothy P. Heffernan, Remco van Doorn, Sabin Dhakal, Jason A. Hanna, Chengyin Min, Mariela Jaskelioff, Yonghong Xiao, Chang-Jiun Wu, Lisa A. Cameron, Samuel R. Perry, Rhamy Zeid, Tamar Feinberg, Minjung Kim, George Vande Woude, Scott R. Granter, Marcus Bosenberg, Gerald C. Chu, Ronald A. DePinho, David L. Rimm, Lynda Chin
Cancer Cell. Author manuscript; available in PMC 2012 July 12.
Published in final edited form as: Cancer Cell. 2011 July 12; 20(1): 92–103. doi: 10.1016/j.ccr.2011.05.025
PMCID:
PMC3176328
Free in PMC on 2012/07/12
An Evaluation Protocol for Subtype-Specific Breast Cancer Event Prediction
Herman M. J. Sontrop, Wim F. J. Verhaegh, Marcel J. T. Reinders, Perry D. Moerland
PLoS One. 2011; 6(7): e21681. Published online 2011 July 8. doi: 10.1371/journal.pone.0021681
PMCID:
PMC3132736
Abstract Full Text PDF–1.8M Supplementary Material
A breast cancer meta-analysis of two expression measures of chromosomal instability reveals a relationship with younger age at diagnosis and high risk histopathological variables
David Endesfelder, Nicholas McGranahan, Nicolai J. Birkbak, Zoltan Szallasi, Maik Kschischo, Trevor A. Graham, Charles Swanton
Oncotarget. 2011 July; 2(7): 529–537. Published online 2011 June 25.
PMCID:
PMC3248181
Abstract Full Text PDF–732K
Protein Arginine Methyltransferase 5 accelerates tumor growth by arginine methylation of the tumor suppressor Programmed Cell Death 4
Matthew A. Powers, Marta M. Fay, Rachel E. Factor, Alana L. Welm, Katharine S. Ullman
Cancer Res. Author manuscript; available in PMC 2012 August 15.
Published in final edited form as: Cancer Res. 2011 August 15; 71(16): 5579–5587. Published online 2011 June 23. doi: 10.1158/0008-5472.CAN-11-0458
PMCID:
PMC3156344
Free in PMC on 2012/08/15
Protein expression based multimarker analysis of breast cancer samples
Angela P Presson, Nam K Yoon, Lora Bagryanova, Vei Mah, Mohammad Alavi, Erin L Maresh, Ayyappan K Rajasekaran, Lee Goodglick, David Chia, Steve Horvath
BMC Cancer. 2011; 11: 230. Published online 2011 June 8. doi: 10.1186/1471-2407-11-230
PMCID:
PMC3142534
Abstract Full Text PDF–409K Supplementary Material
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