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Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts
Yudi Pawitan, Judith Bjöhle, Lukas Amler, Anna-Lena Borg, Suzanne Egyhazi, Per Hall, Xia Han, Lars Holmberg, Fei Huang, Sigrid Klaar, Edison T Liu, Lance Miller, Hans Nordgren, Alexander Ploner, Kerstin Sandelin, Peter M Shaw, Johanna Smeds, Lambert Skoog, Sara Wedrén, Jonas Bergh
Breast Cancer Res. 2005; 7(6): R953–R964. Published online 2005 October 3. doi: 10.1186/bcr1325
PMCID:
PMC1410752
Abstract Full Text PDF–1.4M Supplementary Material
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 Is Cited by the Following 112 Articles in this Archive:
Homogeneous Datasets of Triple Negative Breast Cancers Enable the Identification of Novel Prognostic and Predictive Signatures
Thomas Karn, Lajos Pusztai, Uwe Holtrich, Takayuki Iwamoto, Christine Y. Shiang, Marcus Schmidt, Volkmar Müller, Christine Solbach, Regine Gaetje, Lars Hanker, Andre Ahr, Cornelia Liedtke, Eugen Ruckhäberle, Manfred Kaufmann, Achim Rody
PLoS One. 2011; 6(12): e28403. Published online 2011 December 29. doi: 10.1371/journal.pone.0028403
PMCID:
PMC3248403
Abstract Full Text PDF–761K Supplementary Material
The Influence of Feature Selection Methods on Accuracy, Stability and Interpretability of Molecular Signatures
Anne-Claire Haury, Pierre Gestraud, Jean-Philippe Vert
PLoS One. 2011; 6(12): e28210. Published online 2011 December 21. doi: 10.1371/journal.pone.0028210
PMCID:
PMC3244389
Abstract Full Text PDF–1023K
PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer
Luca Magnani, Elizabeth B. Ballantyne, Xiaoyang Zhang, Mathieu Lupien
PLoS Genet. 2011 November; 7(11): e1002368. Published online 2011 November 17. doi: 10.1371/journal.pgen.1002368
PMCID:
PMC3219601
Abstract Full Text PDF–1.0M Supplementary Material
Down-Regulation of ECRG4, a Candidate Tumor Suppressor Gene, in Human Breast Cancer
Renaud Sabatier, Pascal Finetti, José Adelaide, Arnaud Guille, Jean-Paul Borg, Max Chaffanet, Lydie Lane, Daniel Birnbaum, François Bertucci
PLoS One. 2011; 6(11): e27656. Published online 2011 November 16. doi: 10.1371/journal.pone.0027656
PMCID:
PMC3218004
Abstract Full Text PDF–356K Supplementary Material
Network Based Consensus Gene Signatures for Biomarker Discovery in Breast Cancer
Holger Fröhlich
PLoS One. 2011; 6(10): e25364. Published online 2011 October 25. doi: 10.1371/journal.pone.0025364
PMCID:
PMC3201953
Abstract Full Text PDF–1.1M Supplementary Material
Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome
David Venet, Jacques E. Dumont, Vincent Detours
PLoS Comput Biol. 2011 October; 7(10): e1002240. Published online 2011 October 20. doi: 10.1371/journal.pcbi.1002240
PMCID:
PMC3197658
Abstract Full Text PDF–443K Supplementary Material
A new gene expression signature, the ClinicoMolecular Triad Classification, may improve prediction and prognostication of breast cancer at the time of diagnosis
Dong-Yu Wang, Susan J Done, David R McCready, Scott Boerner, Supriya Kulkarni, Wey Liang Leong
Breast Cancer Res. 2011; 13(5): R92. Published online 2011 September 22. doi: 10.1186/bcr3017
PMCID:
PMC3262204
Abstract Full Text PDF–1.1M Supplementary Material
Breast tumors from CHEK2 1100delC-mutation carriers: genomic landscape and clinical implications
Taru A Muranen, Dario Greco, Rainer Fagerholm, Outi Kilpivaara, Kati Kämpjärvi, Kristiina Aittomäki, Carl Blomqvist, Päivi Heikkilä, Åke Borg, Heli Nevanlinna
Breast Cancer Res. 2011; 13(5): R90. Published online 2011 September 20. doi: 10.1186/bcr3015
PMCID:
PMC3262202
Abstract Full Text PDF–440K Supplementary Material
Sprouty 2 Is an Independent Prognostic Factor in Breast Cancer and May Be Useful in Stratifying Patients for Trastuzumab Therapy
Dana Faratian, Andrew H. Sims, Peter Mullen, Charlene Kay, InHwa Um, Simon P. Langdon, David J. Harrison
PLoS One. 2011; 6(8): e23772. Published online 2011 August 31. doi: 10.1371/journal.pone.0023772
PMCID:
PMC3166119
Abstract Full Text PDF–833K Supplementary Material
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response
Qiyuan Li, Aron C Eklund, Nicolai J Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L Richardson, Zoltan Szallasi
BMC Bioinformatics. 2011; 12: 310. Published online 2011 July 28. doi: 10.1186/1471-2105-12-310
PMCID:
PMC3155975
Abstract Full Text PDF–498K Supplementary Material
A simple method for assigning genomic grade to individual breast tumours
Kristian Wennmalm, Jonas Bergh
BMC Cancer. 2011; 11: 306. Published online 2011 July 21. doi: 10.1186/1471-2407-11-306
PMCID:
PMC3150343
Abstract Full Text PDF–182K Supplementary Material
Kinome expression profiling and prognosis of basal breast cancers
Renaud Sabatier, Pascal Finetti, Emilie Mamessier, Stéphane Raynaud, Nathalie Cervera, Eric Lambaudie, Jocelyne Jacquemier, Patrice Viens, Daniel Birnbaum, François Bertucci
Mol Cancer. 2011; 10: 86. Published online 2011 July 21. doi: 10.1186/1476-4598-10-86
PMCID:
PMC3156788
Abstract Full Text PDF–553K Supplementary Material
An Evaluation Protocol for Subtype-Specific Breast Cancer Event Prediction
Herman M. J. Sontrop, Wim F. J. Verhaegh, Marcel J. T. Reinders, Perry D. Moerland
PLoS One. 2011; 6(7): e21681. Published online 2011 July 8. doi: 10.1371/journal.pone.0021681
PMCID:
PMC3132736
Abstract Full Text PDF–1.8M Supplementary Material
A breast cancer meta-analysis of two expression measures of chromosomal instability reveals a relationship with younger age at diagnosis and high risk histopathological variables
David Endesfelder, Nicholas McGranahan, Nicolai J. Birkbak, Zoltan Szallasi, Maik Kschischo, Trevor A. Graham, Charles Swanton
Oncotarget. 2011 July; 2(7): 529–537. Published online 2011 June 25.
PMCID:
PMC3248181
Abstract Full Text PDF–732K
Protein expression based multimarker analysis of breast cancer samples
Angela P Presson, Nam K Yoon, Lora Bagryanova, Vei Mah, Mohammad Alavi, Erin L Maresh, Ayyappan K Rajasekaran, Lee Goodglick, David Chia, Steve Horvath
BMC Cancer. 2011; 11: 230. Published online 2011 June 8. doi: 10.1186/1471-2407-11-230
PMCID:
PMC3142534
Abstract Full Text PDF–409K Supplementary Material
Transgenic Expression of Polyomavirus Middle T Antigen in the Mouse Prostate Gives Rise to Carcinoma
Sang Hyun Lee, Shidong Jia, Yanni Zhu, Tamara Utermark, Sabina Signoretti, Massimo Loda, Brian Schaffhausen, Thomas M. Roberts
J Virol. 2011 June; 85(11): 5581–5592. doi: 10.1128/JVI.02609-10
PMCID:
PMC3094993
Abstract Full Text PDF–3.3M Supplementary Material
Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies
Brian D. Lehmann, Joshua A. Bauer, Xi Chen, Melinda E. Sanders, A. Bapsi Chakravarthy, Yu Shyr, Jennifer A. Pietenpol
J Clin Invest. 2011 July 1; 121(7): 2750–2767. Published online 2011 June 1. doi: 10.1172/JCI45014
PMCID:
PMC3127435
Abstract Full Text PDF–5.4M Supplementary Material
Context-specific gene regulatory networks subdivide intrinsic subtypes of breast cancer
Sara Nasser, Heather E Cunliffe, Michael A Black, Seungchan Kim
BMC Bioinformatics. 2011; 12(Suppl 2): S3. Published online 2011 March 29. doi: 10.1186/1471-2105-12-S2-S3
PMCID:
PMC3073183
Abstract Full Text PDF–888K Supplementary Material
A Tumor-Associated Mutation of FYVE-CENT Prevents Its Interaction with Beclin 1 and Interferes with Cytokinesis
Antonia P. Sagona, Ioannis P. Nezis, Kristi G. Bache, Kaisa Haglund, Anne Cathrine Bakken, Rolf I. Skotheim, Harald Stenmark
PLoS One. 2011; 6(3): e17086. Published online 2011 March 24. doi: 10.1371/journal.pone.0017086
PMCID:
PMC3063775
Abstract Full Text PDF–1.5M Supplementary Material
GOBO: Gene Expression-Based Outcome for Breast Cancer Online
Markus Ringnér, Erik Fredlund, Jari Häkkinen, Åke Borg, Johan Staaf
PLoS One. 2011; 6(3): e17911. Published online 2011 March 21. doi: 10.1371/journal.pone.0017911
PMCID:
PMC3061871
Abstract Full Text PDF–971K Supplementary Material
A Signature Inferred from Drosophila Mitotic Genes Predicts Survival of Breast Cancer Patients
Christian Damasco, Antonio Lembo, Maria Patrizia Somma, Maurizio Gatti, Ferdinando Di Cunto, Paolo Provero
PLoS One. 2011; 6(2): e14737. Published online 2011 February 28. doi: 10.1371/journal.pone.0014737
PMCID:
PMC3046113
Abstract Full Text PDF–931K Supplementary Material
Paradoxical relationship between chromosomal instability and survival outcome in cancer
Nicolai J. Birkbak, Aron C. Eklund, Qiyuan Li, Sarah E. McClelland, David Endesfelder, Patrick Tan, Iain B Tan, Andrea L. Richardson, Zoltan Szallasi, Charles Swanton
Cancer Res. Author manuscript; available in PMC 2011 November 15.
Published in final edited form as: Cancer Res. 2011 May 15; 71(10): 3447–3452. Published online 2011 January 26. doi: 10.1158/0008-5472.CAN-10-3667
PMCID:
PMC3096721
Abstract Full Text PDF–404K Supplementary Material
Snail2 is an essential mediator of Twist1-induced epithelial-mesenchymal transition and metastasis
Esmeralda Casas, Jihoon Kim, Andrés Bendesky, Lucila Ohno-Machado, Cecily J. Wolfe, Jing Yang
Cancer Res. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Cancer Res. 2011 January 1; 71(1): 245–254. doi: 10.1158/0008-5472.CAN-10-2330
PMCID:
PMC3025803
Abstract Full Text PDF–2.0M Supplementary Material
Thioredoxin-like 2 regulates human cancer cell growth and metastasis via redox homeostasis and NF-κB signaling
Ying Qu, Jinhua Wang, Partha S. Ray, Hua Guo, Jian Huang, Miyung Shin-Sim, Bolanle A. Bukoye, Bingya Liu, Adrian V. Lee, Xin Lin, Peng Huang, John W. Martens, Armando E. Giuliano, Ning Zhang, Ning-Hui Cheng, Xiaojiang Cui
J Clin Invest. 2011 January 4; 121(1): 212–225. Published online 2010 December 1. doi: 10.1172/JCI43144
PMCID:
PMC3007146
Abstract Full Text PDF–2.5M Supplementary Material
BRCA1 modulates the expression of hnRNPA2B1 and KHSRP
Manuela Santarosa, Laura Del Col, Alessandra Viel, Nicoletta Bivi, Chiara D'Ambrosio, Andrea Scaloni, Gianluca Tell, Roberta Maestro
Cell Cycle. 2010 December 1; 9(23): 4666–4673. Published online 2010 December 1. doi: 10.4161/cc.9.23.14022
PMCID:
PMC3048036
Abstract Full Text PDF–346K Supplementary Material
Klotho is silenced through promoter hypermethylation in gastric cancer
Liangjing Wang, Xian Wang, Xiaojia Wang, Pan Jie, Haiqi Lu, Shengjie Zhang, Xiaoying Lin, Emily KY lam, Yan Cui, Jun Yu, Hongchuan Jin
Am J Cancer Res. 2011; 1(1): 111–119. Published online 2010 November 10.
PMCID:
PMC3180103
Abstract Full Text PDF–1.3M
Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
Chen Yao, Hongdong Li, Chenggui Zhou, Lin Zhang, Jinfeng Zou, Zheng Guo
BMC Syst Biol. 2010; 4: 151. Published online 2010 November 9. doi: 10.1186/1752-0509-4-151
PMCID:
PMC2990745
Abstract Full Text PDF–541K Supplementary Material
Comparative survival analysis of breast cancer microarray studies identifies important prognostic genetic pathways
Jeffrey C Miecznikowski, Dan Wang, Song Liu, Lara Sucheston, David Gold
BMC Cancer. 2010; 10: 573. Published online 2010 October 21. doi: 10.1186/1471-2407-10-573
PMCID:
PMC2972286
Abstract Full Text PDF–294K Supplementary Material
Increased NOS2 predicts poor survival in estrogen receptor–negative breast cancer patients
Sharon A. Glynn, Brenda J. Boersma, Tiffany H. Dorsey, Ming Yi, Harris G. Yfantis, Lisa A. Ridnour, Damali N. Martin, Christopher H. Switzer, Robert S. Hudson, David A. Wink, Dong H. Lee, Robert M. Stephens, Stefan Ambs
J Clin Invest. 2010 November 1; 120(11): 3843–3854. Published online 2010 October 18. doi: 10.1172/JCI42059
PMCID:
PMC2964971
Abstract Full Text PDF–880K Supplementary Material
Genomic distance entrained clustering and regression modelling highlights interacting genomic regions contributing to proliferation in breast cancer
Tim J Dexter, David Sims, Costas Mitsopoulos, Alan Mackay, Anita Grigoriadis, Amar S Ahmad, Marketa Zvelebil
BMC Syst Biol. 2010; 4: 127. Published online 2010 September 8. doi: 10.1186/1752-0509-4-127
PMCID:
PMC2946304
Abstract Full Text PDF–1.3M Supplementary Material
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