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Untranslated regions of mRNAs
Flavio Mignone, Carmela Gissi, Sabino Liuni, Graziano Pesole
Genome Biol. 2002; 3(3): reviews0004.1–reviews0004.10. Published online 2002 February 28.
PMCID:
PMC139023
Abstract Full Text PDF–204K

Is Cited by the Following 81 Articles in this Archive:

Genetic Background Analysis of Protein C Deficiency Demonstrates a Recurrent Mutation Associated with Venous Thrombosis in Chinese Population
Liang Tang, Tao Guo, Rui Yang, Heng Mei, Huafang Wang, Xuan Lu, Jianming Yu, Qingyun Wang, Yu Hu
PLoS One. 2012; 7(4): e35773. Published online 2012 April 24. doi: 10.1371/journal.pone.0035773
PMCID:
PMC3335791
Abstract Full Text PDF–679K
Application of Serial Analysis of Gene Expression to the Study of the Gene Expression Profile of Leishmania infantum chagasi Promastigote
Adelino Soares Lima Neto, Osvaldo Pompílio de Melo Neto, Carlos Henrique Nery Costa
J Biomed Biotechnol. 2012; 2012: 673458. Published online 2012 April 10. doi: 10.1155/2012/673458
PMCID:
PMC3336188
Abstract Full Text PDF–494K
Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes
Marco Mariotti, Perry G. Ridge, Yan Zhang, Alexei V. Lobanov, Thomas H. Pringle, Roderic Guigo, Dolph L. Hatfield, Vadim N. Gladyshev
PLoS One. 2012; 7(3): e33066. Published online 2012 March 30. doi: 10.1371/journal.pone.0033066
PMCID:
PMC3316567
Abstract Full Text PDF–1.5M Supplementary Material
The role of mRNA decay in p53-induced gene expression
Brian D. Melanson, Reetesh Bose, Jeff D. Hamill, Kristen A. Marcellus, Elysia F. Pan, Bruce C. McKay
RNA. 2011 December; 17(12): 2222–2234. doi: 10.1261/rna.030122.111
PMCID:
PMC3222134
Free in PMC on 2012/12/01
A Systematic Analysis of the 3′UTR of HNF4A mRNA Reveals an Interplay of Regulatory Elements Including miRNA Target Sites
Andrea Wirsing, Sabine Senkel, Ludger Klein-Hitpass, Gerhart U. Ryffel
PLoS One. 2011; 6(11): e27438. Published online 2011 November 30. doi: 10.1371/journal.pone.0027438
PMCID:
PMC3227676
Abstract Full Text PDF–612K Supplementary Material
Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives
Firoz Ahmed, Vagner A. Benedito, Patrick Xuechun Zhao
Front Plant Sci. 2011; 2: 84. Published online 2011 November 30. doi: 10.3389/fpls.2011.00084
PMCID:
PMC3355573
Abstract Full Text PDF–1.6M
A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq
Lin Wang, Yaqing Si, Lauren K. Dedow, Ying Shao, Peng Liu, Thomas P. Brutnell
PLoS One. 2011; 6(10): e26426. Published online 2011 October 19. doi: 10.1371/journal.pone.0026426
Correction in:
PLoS One. 2011; 6(11): 10.1371/annotation/e5ef7afc-7e81-4053-8670-1bb3402f63fd.
PMCID:
PMC3198403
Abstract Full Text PDF–1.6M Supplementary Material Correction
Evolution of 5′ Untranslated Region Length and Gene Expression Reprogramming in Yeasts
Zhenguo Lin, Wen-Hsiung Li
Mol Biol Evol. 2012 January; 29(1): 81–89. Published online 2011 September 28. doi: 10.1093/molbev/msr143
PMCID:
PMC3245540
Free in PMC on 2013/01/01
Neural-specific elongation of 3′ UTRs during Drosophila development
Valérie Hilgers, Michael W. Perry, David Hendrix, Alexander Stark, Michael Levine, Benjamin Haley
Proc Natl Acad Sci U S A. 2011 September 20; 108(38): 15864–15869. Published online 2011 September 6. doi: 10.1073/pnas.1112672108
PMCID:
PMC3179109
Abstract Full Text PDF–672K Supplementary Material
The untranslated exon B of human surfactant protein A2 mRNAs is an enhancer for transcription and translation
Patricia Silveyra, Manmeet Raval, Brett Simmons, Susan DiAngelo, Guirong Wang, Joanna Floros
Am J Physiol Lung Cell Mol Physiol. 2011 November; 301(5): L795–L803. Published online 2011 August 12. doi: 10.1152/ajplung.00439.2010
PMCID:
PMC3290452
Free in PMC on 2012/11/01
hnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3
Do-Yeon Kim, Eunyee Kwak, Sung-Hoon Kim, Kyung-Ha Lee, Kyung-Chul Woo, Kyong-Tai Kim
Nucleic Acids Res. 2011 November; 39(20): 8901–8914. Published online 2011 July 23. doi: 10.1093/nar/gkr605
PMCID:
PMC3203584
Abstract Full Text PDF–2.0M Supplementary Material
Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals
Chun-Hsi Chen, Ben-Yang Liao, Feng-Chi Chen
BMC Evol Biol. 2011; 11: 192. Published online 2011 July 5. doi: 10.1186/1471-2148-11-192
PMCID:
PMC3146882
Abstract Full Text PDF–999K Supplementary Material
Structural Organization and Expression Pattern of the Canine RPGRIP1 Isoforms in Retinal Tissue
Tatyana Kuznetsova, Barbara Zangerl, Orly Goldstein, Gregory M. Acland, Gustavo D. Aguirre
Invest Ophthalmol Vis Sci. 2011 May; 52(6): 2989–2998. Published online 2011 May 6. doi: 10.1167/iovs.10-6094
PMCID:
PMC3109012
Abstract Full Text PDF–1.4M Supplementary Material
Differential usage of transcriptional start sites and polyadenylation sites in FMR1 premutation alleles
Flora Tassone, Silvia De Rubeis, Chiara Carosi, Giorgio La Fata, Gisele Serpa, Christopher Raske, Rob Willemsen, Paul J. Hagerman, Claudia Bagni
Nucleic Acids Res. 2011 August; 39(14): 6172–6185. Published online 2011 April 7. doi: 10.1093/nar/gkr100
PMCID:
PMC3152321
Abstract Full Text PDF–5.2M
Glucocorticoid regulation of human pulmonary surfactant protein-B (SP-B) mRNA stability is independent of activated glucocorticoid receptor
Ceá C. Tillis, Helen W. Huang, Weizhen Bi, Su Pan, Shirley R. Bruce, Joseph L. Alcorn
Am J Physiol Lung Cell Mol Physiol. 2011 June; 300(6): L940–L950. Published online 2011 March 11. doi: 10.1152/ajplung.00420.2010
PMCID:
PMC3119123
Free in PMC on 2012/06/01
Pharmacogenetics of antidepressant response
Stefano Porcelli, Antonio Drago, Chiara Fabbri, Sara Gibiino, Raffaella Calati, Alessandro Serretti
J Psychiatry Neurosci. 2011 March; 36(2): 87–113. doi: 10.1503/jpn.100059
PMCID:
PMC3044192
Abstract Full Text PDF–1.4M
Gene structure, transcripts and calciotropic effects of the PTH family of peptides in Xenopus and chicken
Pedro LC Pinheiro, João CR Cardoso, Ana S Gomes, Juan Fuentes, Deborah M Power, Adelino VM Canário
BMC Evol Biol. 2010; 10: 373. Published online 2010 December 1. doi: 10.1186/1471-2148-10-373
PMCID:
PMC3009671
Abstract Full Text PDF–1016K Supplementary Material
Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans
An Mannaert, Chris T Amemiya, Franky Bossuyt
BMC Genomics. 2010; 11: 658. Published online 2010 November 24. doi: 10.1186/1471-2164-11-658
PMCID:
PMC3091776
Abstract Full Text PDF–532K Supplementary Material
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation
Zhenguo Lin, Wei-Sheng Wu, Han Liang, Yong Woo, Wen-Hsiung Li
BMC Genomics. 2010; 11: 581. Published online 2010 October 19. doi: 10.1186/1471-2164-11-581
PMCID:
PMC3091728
Abstract Full Text PDF–1019K Supplementary Material
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith
BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565
PMCID:
PMC3091714
Abstract Full Text PDF–1.0M Supplementary Material
Connections between Alternative Transcription and Alternative Splicing in Mammals
Svetlana A. Shabalina, Alexey N. Spiridonov, Nikolay A. Spiridonov, Eugene V. Koonin
Genome Biol Evol. 2010; 2: 791–799. Published online 2010 October 1. doi: 10.1093/gbe/evq058
PMCID:
PMC2975443
Abstract Full Text PDF–389K
A potential role for intragenic miRNAs on their hosts' interactome
Ludwig Christian G Hinske, Pedro AF Galante, Winston P Kuo, Lucila Ohno-Machado
BMC Genomics. 2010; 11: 533. Published online 2010 October 1. doi: 10.1186/1471-2164-11-533
PMCID:
PMC3091682
Abstract Full Text PDF–913K Supplementary Material
eIF4A Inhibition Allows Translational Regulation of mRNAs Encoding Proteins Involved in Alzheimer's Disease
Andrew Bottley, Nicola M. Phillips, Thomas E. Webb, Anne E. Willis, Keith A. Spriggs
PLoS One. 2010; 5(9): e13030. Published online 2010 September 28. doi: 10.1371/journal.pone.0013030
PMCID:
PMC2946912
Abstract Full Text PDF–672K
AUF1 p42 isoform selectively controls both steady-state and PGE2-induced FGF9 mRNA decay
Tsung-Ming Chen, Chien-Hui Hsu, Shaw-Jenq Tsai, H. Sunny Sun
Nucleic Acids Res. 2010 December; 38(22): 8061–8071. Published online 2010 August 14. doi: 10.1093/nar/gkq717
PMCID:
PMC3001084
Abstract Full Text PDF–8.0M Supplementary Material
Human SP-A1 (SFTPA1) variant-specific 3′ UTRs and poly(A) tail differentially affect the in vitro translation of a reporter gene
Patricia Silveyra, Guirong Wang, Joanna Floros
Am J Physiol Lung Cell Mol Physiol. 2010 October; 299(4): L523–L534. Published online 2010 August 6. doi: 10.1152/ajplung.00113.2010
PMCID:
PMC2957414
Abstract Full Text
A Comprehensive, Quantitative, and Genome-Wide Model of Translation
Marlena Siwiak, Piotr Zielenkiewicz
PLoS Comput Biol. 2010 July; 6(7): e1000865. Published online 2010 July 29. doi: 10.1371/journal.pcbi.1000865
PMCID:
PMC2912337
Abstract Full Text PDF–834K Supplementary Material
CPEB2, CPEB3 and CPEB4 are coordinately regulated by miRNAs recognizing conserved binding sites in paralog positions of their 3′-UTRs
Marcos Morgan, Alessandra Iaconcig, Andrés Fernando Muro
Nucleic Acids Res. 2010 November; 38(21): 7698–7710. Published online 2010 July 24. doi: 10.1093/nar/gkq635
PMCID:
PMC2995058
Abstract Full Text PDF–6.7M Supplementary Material
Tinkering Evolution of Post-Transcriptional RNA Regulons: Puf3p in Fungi as an Example
Huifeng Jiang, Wenjun Guan, Zhenglong Gu
PLoS Genet. 2010 July; 6(7): e1001030. Published online 2010 July 22. doi: 10.1371/journal.pgen.1001030
PMCID:
PMC2908677
Abstract Full Text PDF–1.1M Supplementary Material
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays
Adnane Sellam, Hervé Hogues, Christopher Askew, Faiza Tebbji, Marco van het Hoog, Hugo Lavoie, Carol A Kumamoto, Malcolm Whiteway, André Nantel
Genome Biol. 2010; 11(7): R71. Published online 2010 July 9. doi: 10.1186/gb-2010-11-7-r71
PMCID:
PMC2926782
Abstract Full Text PDF–3.9M Supplementary Material
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics
Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata
BMC Genomics. 2010; 11: 210. Published online 2010 March 30. doi: 10.1186/1471-2164-11-210
PMCID:
PMC2859864
Abstract Full Text PDF–1.6M Supplementary Material
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