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Untranslated regions of mRNAs
Flavio Mignone, Carmela Gissi, Sabino Liuni, Graziano Pesole
Genome Biol. 2002; 3(3): reviews0004.1–reviews0004.10. Published online 2002 February 28.
PMCID:
PMC139023
Abstract Full Text PDF–204K
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 Is Cited by the Following 72 Articles in this Archive:
A Systematic Analysis of the 3′UTR of HNF4A mRNA Reveals an Interplay of Regulatory Elements Including miRNA Target Sites
Andrea Wirsing, Sabine Senkel, Ludger Klein-Hitpass, Gerhart U. Ryffel
PLoS One. 2011; 6(11): e27438. Published online 2011 November 30. doi: 10.1371/journal.pone.0027438
PMCID:
PMC3227676
Abstract Full Text PDF–612K Supplementary Material
A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq
Lin Wang, Yaqing Si, Lauren K. Dedow, Ying Shao, Peng Liu, Thomas P. Brutnell
PLoS One. 2011; 6(10): e26426. Published online 2011 October 19. doi: 10.1371/journal.pone.0026426
Correction in:
PLoS One. 2011; 6(11): 10.1371/annotation/e5ef7afc-7e81-4053-8670-1bb3402f63fd.
PMCID:
PMC3198403
Abstract Full Text PDF–1.6M Supplementary Material Correction
hnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3
Do-Yeon Kim, Eunyee Kwak, Sung-Hoon Kim, Kyung-Ha Lee, Kyung-Chul Woo, Kyong-Tai Kim
Nucleic Acids Res. 2011 November; 39(20): 8901–8914. Published online 2011 July 23. doi: 10.1093/nar/gkr605
PMCID:
PMC3203584
Abstract Full Text PDF–2.0M Supplementary Material
Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals
Chun-Hsi Chen, Ben-Yang Liao, Feng-Chi Chen
BMC Evol Biol. 2011; 11: 192. Published online 2011 July 5. doi: 10.1186/1471-2148-11-192
PMCID:
PMC3146882
Abstract Full Text PDF–999K Supplementary Material
Structural Organization and Expression Pattern of the Canine RPGRIP1 Isoforms in Retinal Tissue
Tatyana Kuznetsova, Barbara Zangerl, Orly Goldstein, Gregory M. Acland, Gustavo D. Aguirre
Invest Ophthalmol Vis Sci. 2011 May; 52(6): 2989–2998. Published online 2011 May 6. doi: 10.1167/iovs.10-6094
PMCID:
PMC3109012
Abstract Full Text PDF–1.4M Supplementary Material
Differential usage of transcriptional start sites and polyadenylation sites in FMR1 premutation alleles
Flora Tassone, Silvia De Rubeis, Chiara Carosi, Giorgio La Fata, Gisele Serpa, Christopher Raske, Rob Willemsen, Paul J. Hagerman, Claudia Bagni
Nucleic Acids Res. 2011 August; 39(14): 6172–6185. Published online 2011 April 7. doi: 10.1093/nar/gkr100
PMCID:
PMC3152321
Abstract Full Text PDF–5.2M
Pharmacogenetics of antidepressant response
Stefano Porcelli, Antonio Drago, Chiara Fabbri, Sara Gibiino, Raffaella Calati, Alessandro Serretti
J Psychiatry Neurosci. 2011 March; 36(2): 87–113. doi: 10.1503/jpn.100059
PMCID:
PMC3044192
Abstract Full Text PDF–1.4M
Gene structure, transcripts and calciotropic effects of the PTH family of peptides in Xenopus and chicken
Pedro LC Pinheiro, João CR Cardoso, Ana S Gomes, Juan Fuentes, Deborah M Power, Adelino VM Canário
BMC Evol Biol. 2010; 10: 373. Published online 2010 December 1. doi: 10.1186/1471-2148-10-373
PMCID:
PMC3009671
Abstract Full Text PDF–1016K Supplementary Material
Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans
An Mannaert, Chris T Amemiya, Franky Bossuyt
BMC Genomics. 2010; 11: 658. Published online 2010 November 24. doi: 10.1186/1471-2164-11-658
PMCID:
PMC3091776
Abstract Full Text PDF–532K Supplementary Material
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation
Zhenguo Lin, Wei-Sheng Wu, Han Liang, Yong Woo, Wen-Hsiung Li
BMC Genomics. 2010; 11: 581. Published online 2010 October 19. doi: 10.1186/1471-2164-11-581
PMCID:
PMC3091728
Abstract Full Text PDF–1019K Supplementary Material
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith
BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565
PMCID:
PMC3091714
Abstract Full Text PDF–1.0M Supplementary Material
Connections between Alternative Transcription and Alternative Splicing in Mammals
Svetlana A. Shabalina, Alexey N. Spiridonov, Nikolay A. Spiridonov, Eugene V. Koonin
Genome Biol Evol. 2010; 2: 791–799. Published online 2010 October 1. doi: 10.1093/gbe/evq058
PMCID:
PMC2975443
Abstract Full Text PDF–389K
A potential role for intragenic miRNAs on their hosts' interactome
Ludwig Christian G Hinske, Pedro AF Galante, Winston P Kuo, Lucila Ohno-Machado
BMC Genomics. 2010; 11: 533. Published online 2010 October 1. doi: 10.1186/1471-2164-11-533
PMCID:
PMC3091682
Abstract Full Text PDF–913K Supplementary Material
eIF4A Inhibition Allows Translational Regulation of mRNAs Encoding Proteins Involved in Alzheimer's Disease
Andrew Bottley, Nicola M. Phillips, Thomas E. Webb, Anne E. Willis, Keith A. Spriggs
PLoS One. 2010; 5(9): e13030. Published online 2010 September 28. doi: 10.1371/journal.pone.0013030
PMCID:
PMC2946912
Abstract Full Text PDF–672K
AUF1 p42 isoform selectively controls both steady-state and PGE2-induced FGF9 mRNA decay
Tsung-Ming Chen, Chien-Hui Hsu, Shaw-Jenq Tsai, H. Sunny Sun
Nucleic Acids Res. 2010 December; 38(22): 8061–8071. Published online 2010 August 14. doi: 10.1093/nar/gkq717
PMCID:
PMC3001084
Abstract Full Text PDF–8.0M Supplementary Material
Human SP-A1 (SFTPA1) variant-specific 3′ UTRs and poly(A) tail differentially affect the in vitro translation of a reporter gene
Patricia Silveyra, Guirong Wang, Joanna Floros
Am J Physiol Lung Cell Mol Physiol. 2010 October; 299(4): L523–L534. Published online 2010 August 6. doi: 10.1152/ajplung.00113.2010
PMCID:
PMC2957414
Abstract Full Text
A Comprehensive, Quantitative, and Genome-Wide Model of Translation
Marlena Siwiak, Piotr Zielenkiewicz
PLoS Comput Biol. 2010 July; 6(7): e1000865. Published online 2010 July 29. doi: 10.1371/journal.pcbi.1000865
PMCID:
PMC2912337
Abstract Full Text PDF–834K Supplementary Material
CPEB2, CPEB3 and CPEB4 are coordinately regulated by miRNAs recognizing conserved binding sites in paralog positions of their 3′-UTRs
Marcos Morgan, Alessandra Iaconcig, Andrés Fernando Muro
Nucleic Acids Res. 2010 November; 38(21): 7698–7710. Published online 2010 July 24. doi: 10.1093/nar/gkq635
PMCID:
PMC2995058
Abstract Full Text PDF–6.7M Supplementary Material
Tinkering Evolution of Post-Transcriptional RNA Regulons: Puf3p in Fungi as an Example
Huifeng Jiang, Wenjun Guan, Zhenglong Gu
PLoS Genet. 2010 July; 6(7): e1001030. Published online 2010 July 22. doi: 10.1371/journal.pgen.1001030
PMCID:
PMC2908677
Abstract Full Text PDF–1.1M Supplementary Material
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays
Adnane Sellam, Hervé Hogues, Christopher Askew, Faiza Tebbji, Marco van het Hoog, Hugo Lavoie, Carol A Kumamoto, Malcolm Whiteway, André Nantel
Genome Biol. 2010; 11(7): R71. Published online 2010 July 9. doi: 10.1186/gb-2010-11-7-r71
PMCID:
PMC2926782
Abstract Full Text PDF–3.9M Supplementary Material
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics
Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata
BMC Genomics. 2010; 11: 210. Published online 2010 March 30. doi: 10.1186/1471-2164-11-210
PMCID:
PMC2859864
Abstract Full Text PDF–1.6M Supplementary Material
B7-H4 gene polymorphisms are associated with sporadic breast cancer in a Chinese Han population
Jie Zhang, Mingyan Zhang, Wei Jiang, Lihong Wang, Zhenkun Fu, Dalin Li, Da Pang, Dianjun Li
BMC Cancer. 2009; 9: 394. Published online 2009 November 11. doi: 10.1186/1471-2407-9-394
PMCID:
PMC2780456
Abstract Full Text PDF–229K Supplementary Material
Transcriptional and post-transcriptional profile of human chromosome 21
Sergey I. Nikolaev, Samuel Deutsch, Raphael Genolet, Christelle Borel, Leila Parand, Catherine Ucla, Frederic Schütz, Genevieve Duriaux Sail, Yann Dupré, Pascale Jaquier-Gubler, Tanguy Araud, Beatrice Conne, Patrick Descombes, Jean-Dominique Vassalli, Joseph Curran, Stylianos E. Antonarakis
Genome Res. 2009 August; 19(8): 1471–1479. doi: 10.1101/gr.089425.108
PMCID:
PMC2720192
Abstract Full Text PDF–666K
Key role of the 3' untranslated region in the cell cycle regulated expression of the Leishmania infantum histone H2A genes: minor synergistic effect of the 5' untranslated region
Daniel R Abanades, Laura Ramírez, Salvador Iborra, Ketty Soteriadou, Victor M González, Pedro Bonay, Carlos Alonso, Manuel Soto
BMC Mol Biol. 2009; 10: 48. Published online 2009 May 21. doi: 10.1186/1471-2199-10-48
PMCID:
PMC2691400
Abstract Full Text PDF–1.2M
Absence of spermatozoal CD46 protein expression and associated rapid acrosome reaction rate in striped field mice (Apodemus agrarius)
Leanne E Clift, Petra Andrlikova, Michaela Frolikova, Pavel Stopka, Josef Bryja, Brian F Flanagan, Peter M Johnson, Katerina Dvorakova-Hortova
Reprod Biol Endocrinol. 2009; 7: 29. Published online 2009 April 16. doi: 10.1186/1477-7827-7-29
PMCID:
PMC2678130
Abstract Full Text PDF–626K
Haemonchus contortus Acetylcholine Receptors of the DEG-3 Subfamily and Their Role in Sensitivity to Monepantel
Lucien Rufener, Pascal Mäser, Isabel Roditi, Ronald Kaminsky
PLoS Pathog. 2009 April; 5(4): e1000380. Published online 2009 April 10. doi: 10.1371/journal.ppat.1000380
PMCID:
PMC2662886
Abstract Full Text PDF–857K Supplementary Material
Regulation of Translation in Haloarchaea: 5′- and 3′-UTRs Are Essential and Have to Functionally Interact In Vivo
Mariam Brenneis, Jörg Soppa
PLoS ONE. 2009; 4(2): e4484. Published online 2009 February 13. doi: 10.1371/journal.pone.0004484
PMCID:
PMC2636863
Abstract Full Text PDF–742K
Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
Craig Lawless, Richard D Pearson, Julian N Selley, Julia B Smirnova, Christopher M Grant, Mark P Ashe, Graham D Pavitt, Simon J Hubbard
BMC Genomics. 2009; 10: 7. Published online 2009 January 7. doi: 10.1186/1471-2164-10-7
PMCID:
PMC2649001
Abstract Full Text PDF–1.4M Supplementary Material
Where Do Introns Come From?
Francesco Catania, Michael Lynch
PLoS Biol. 2008 November; 6(11): e283. Published online 2008 November 25. doi: 10.1371/journal.pbio.0060283
PMCID:
PMC2586383
Full Text PDF–455K
Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression
Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, Philip N. Benfey
PLoS ONE. 2008; 3(11): e3670. Published online 2008 November 7. doi: 10.1371/journal.pone.0003670
PMCID:
PMC2576458
Abstract Full Text PDF–925K Supplementary Material
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