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Having a BLAST with bioinformatics (and avoiding BLASTphemy)
Alexander Pertsemlidis, John W Fondon, III
Genome Biol. 2001; 2(10): reviews2002.1–reviews2002.10. Published online 2001 September 27.
PMCID:
PMC138974
Abstract Full Text PDF–125K

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A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
Sean R. Eddy
PLoS Comput Biol. 2008 May; 4(5): e1000069. Published online 2008 May 30. doi: 10.1371/journal.pcbi.1000069
PMCID:
PMC2396288
Abstract Full Text PDF–521K
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