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Dog eat dogma
Gregory A Petsko
Genome Biol. 2000; 1(2): comment1002.1–comment1002.2. Published online 2000 July 28.
PMCID:
PMC138841
Full Text PDF–38K
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 Is Cited by the Following 72 Articles in this Archive:
An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics
Richard T Okinaka, Erin P Price, Spenser R Wolken, Jeffrey M Gruendike, Wai Kwan Chung, Talima Pearson, Gary Xie, Chris Munk, Karen K Hill, Jean Challacombe, Bruce E Ivins, James M Schupp, Stephen M Beckstrom-Sternberg, Arthur Friedlander, Paul Keim
BMC Genomics. 2011; 12: 477. Published online 2011 September 30. doi: 10.1186/1471-2164-12-477
PMCID:
PMC3210476
Abstract Full Text PDF–730K Supplementary Material
An Integrative Method for Identifying the Over-Annotated Protein-Coding Genes in Microbial Genomes
Jia-Feng Yu, Ke Xiao, Dong-Ke Jiang, Jing Guo, Ji-Hua Wang, Xiao Sun
DNA Res. 2011 December; 18(6): 435–449. Published online 2011 September 8. doi: 10.1093/dnares/dsr030
PMCID:
PMC3223076
Abstract Full Text PDF–396K Supplementary Material
Role of sequence encoded κB DNA geometry in gene regulation by Dorsal
Nirotpal Mrinal, Archana Tomar, Javaregowda Nagaraju
Nucleic Acids Res. 2011 December; 39(22): 9574–9591. Published online 2011 September 2. doi: 10.1093/nar/gkr672
PMCID:
PMC3239199
Abstract Full Text PDF–13M
The projection score - an evaluation criterion for variable subset selection in PCA visualization
Magnus Fontes, Charlotte Soneson
BMC Bioinformatics. 2011; 12: 307. Published online 2011 July 28. doi: 10.1186/1471-2105-12-307
PMCID:
PMC3167802
Abstract Full Text PDF–2.5M
Proteomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous
Pilar Martinez-Moya, Steven Alexander Watt, Karsten Niehaus, Jennifer Alcaíno, Marcelo Baeza, Víctor Cifuentes
BMC Microbiol. 2011; 11: 131. Published online 2011 June 13. doi: 10.1186/1471-2180-11-131
PMCID:
PMC3224108
Abstract Full Text PDF–4.1M Supplementary Material
New Insights into the Apoptotic Process in Mollusks: Characterization of Caspase Genes in Mytilus galloprovincialis
Alejandro Romero, Noelia Estévez-Calvar, Sonia Dios, Antonio Figueras, Beatriz Novoa
PLoS One. 2011; 6(2): e17003. Published online 2011 February 11. doi: 10.1371/journal.pone.0017003
PMCID:
PMC3037946
Abstract Full Text PDF–1.8M
Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data
Zhu Wang, C.Y. Wang
Stat Appl Genet Mol Biol. 2010 January 1; 9(1): Article 24. Published online 2010 June 8. doi: 10.2202/1544-6115.1550
PMCID:
PMC2904263
Abstract Full Text PDF–1.9M Supplementary Material
Slam haplotypes modulate the response to LPS in vivo through control of NKT cell number and function
Idil Aktan, Alan Chant, Zachary D. Borg, David E. Damby, Paige Leenstra, Graham Lilley, Joseph Petty, Benjamin T. Suratt, Cory Teuscher, Edward K. Wakeland, Matthew E. Poynter, Jonathan E. Boyson
J Immunol. Author manuscript; available in PMC 2011 July 1.
Published in final edited form as: J Immunol. 2010 July 1; 185(1): 144–156. Published online 2010 June 7. doi: 10.4049/jimmunol.0902658
PMCID:
PMC3055558
Abstract Full Text PDF–2.3M
A structural-alphabet-based strategy for finding structural motifs across protein families
Chih Yuan Wu, Yao Chi Chen, Carmay Lim
Nucleic Acids Res. 2010 August; 38(14): e150. Published online 2010 June 4. doi: 10.1093/nar/gkq478
PMCID:
PMC2919736
Abstract Full Text PDF–6.2M Supplementary Material
Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli
Sanjay Kumar Bharti, Umesh Varshney
Nucleic Acids Res. 2010 April; 38(7): 2291–2301. Published online 2010 April. doi: 10.1093/nar/gkp1210
PMCID:
PMC2853124
Abstract Full Text PDF–847K Supplementary Material
Sparse partial least squares regression for simultaneous dimension reduction and variable selection
Hyonho Chun, Sündüz Keleş
J R Stat Soc Series B Stat Methodol. 2010 January; 72(1): 3–25. doi: 10.1111/j.1467-9868.2009.00723.x
PMCID:
PMC2810828
Abstract Full Text PDF–727K
Genome-Wide Identification and Evolutionary Analysis of the Animal Specific ETS Transcription Factor Family
Zhipeng Wang, Qin Zhang
Evol Bioinform Online. 2009; 5: 119–131. Published online 2009 October 2.
PMCID:
PMC2789578
Abstract Full Text PDF–1.6M
Molecular Characterization and Tissue Localization of an F-Box Only Protein from Silkworm, Bombyx mori
Yafang Shen, Tiancheng Zhang, Jianqing Chen, Zhengbing Lv, Jian Chen, Dan Wang, Zuoming Nie, Pingan He, Jiang Wang, Qingliang Zheng, Qing Sheng, Xiangfu Wu, Yaozhou Zhang
Comp Funct Genomics. 2009; 2009: 416040. Published online 2009 June 14. doi: 10.1155/2009/416040
PMCID:
PMC2699434
Abstract Full Text PDF–492K
Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans
Sheng Sun, Jianping Xu
PLoS ONE. 2009; 4(5): e5524. Published online 2009 May 13. doi: 10.1371/journal.pone.0005524
PMCID:
PMC2677675
Abstract Full Text PDF–828K Supplementary Material
TOPOLOGIES OF COMPLEXES CONTAINING O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE AND DNA
Claire A. Adams, Manana Melikishvili, David W. Rodgers, Joseph J. Rasimas, Anthony E. Pegg, Michael G. Fried
J Mol Biol. Author manuscript; available in PMC 2010 June 5.
Published in final edited form as: J Mol Biol. 2009 June 5; 389(2): 248–263. Published online 2009 April 7. doi: 10.1016/j.jmb.2009.03.067
PMCID:
PMC2736636
Abstract Full Text PDF–3.1M Supplementary Material
Determination of bacterial rod shape by a novel cytoskeletal membrane protein
Daisuke Shiomi, Masako Sakai, Hironori Niki
EMBO J. 2008 December 3; 27(23): 3081–3091. Published online 2008 November 13. doi: 10.1038/emboj.2008.234
PMCID:
PMC2599877
Abstract Full Text PDF–846K Supplementary Material
Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins
Shandar Ahmad, Ozlem Keskin, Akinori Sarai, Ruth Nussinov
Nucleic Acids Res. 2008 October; 36(18): 5922–5932. Published online 2008 October. doi: 10.1093/nar/gkn573
PMCID:
PMC2566867
Abstract Full Text PDF–4.5M Supplementary Material
Dual-allele dipstick assay for genotyping single nucleotide polymorphisms by primer extension reaction
Jessica K Konstantou, Penelope C Ioannou, Theodore K Christopoulos
Eur J Hum Genet. 2009 January; 17(1): 105–111. Published online 2008 August 6. doi: 10.1038/ejhg.2008.139
PMCID:
PMC2985959
Abstract Full Text PDF–216K
Dynamics of Genome Rearrangement in Bacterial Populations
Aaron E. Darling, István Miklós, Mark A. Ragan
PLoS Genet. 2008 July; 4(7): e1000128. Published online 2008 July 18. doi: 10.1371/journal.pgen.1000128
PMCID:
PMC2483231
Abstract Full Text PDF–700K Supplementary Material
Diversity in Tissue Expression, Substrate Binding, and SCF Complex Formation for a Lectin Family of Ubiquitin Ligases
Kevin A. Glenn, Rick F. Nelson, Hsiang M. Wen, Adam J. Mallinger, Henry L. Paulson
J Biol Chem. 2008 May 9; 283(19): 12717–12729. doi: 10.1074/jbc.M709508200
PMCID:
PMC2442310
Abstract Full Text Supplementary Material
FBXO25-associated Nuclear Domains: A Novel Subnuclear Structure
Adriana O. Manfiolli, Ana Leticia G.C. Maragno, Munira M.A. Baqui, Sami Yokoo, Felipe R. Teixeira, Eduardo B. Oliveira, Marcelo D. Gomes
Mol Biol Cell. 2008 May; 19(5): 1848–1861. doi: 10.1091/mbc.E07-08-0815
PMCID:
PMC2366848
Abstract Full Text PDF–2.8M Supplementary Material
TtsI regulates symbiotic genes in Rhizobium species NGR234 by binding to tts boxes
Roseli Wassem, Hajime Kobayashi, Kumiko Kambara, Antoine Le Quéré, Graham C. Walker, William J. Broughton, William J. Deakin
Mol Microbiol. Author manuscript; available in PMC 2009 October 29.
Published in final edited form as: Mol Microbiol. 2008 May; 68(3): 736–748. Published online 2008 March 20. doi: 10.1111/j.1365-2958.2008.06187.x
PMCID:
PMC2770584
Abstract Full Text PDF–2.7M Supplementary Material
Conversion of β-carotene into astaxanthin: Two separate enzymes or a bifunctional hydroxylase-ketolase protein?
Juan F Martín, Eduardo Gudiña, José L Barredo
Microb Cell Fact. 2008; 7: 3. Published online 2008 February 20. doi: 10.1186/1475-2859-7-3
PMCID:
PMC2288588
Abstract Full Text PDF–559K
Development and Validation of Biomarker Classifiers for Treatment Selection
Richard Simon
J Stat Plan Inference. Author manuscript; available in PMC 2009 February 1.
Published in final edited form as: J Stat Plan Inference. 2008 February 1; 138(2): 308–320. doi: 10.1016/j.jspi.2007.06.010
PMCID:
PMC2344143
Abstract Full Text PDF–682K
An overview of statistical decomposition techniques applied to complex systems
Yalcin Tuncer, Murat M. Tanik, David B. Allison
Comput Stat Data Anal. Author manuscript; available in PMC 2009 August 31.
Published in final edited form as: Comput Stat Data Anal. 2008 January 20; 52(5): 2292–2310. doi: 10.1016/j.csda.2007.09.012
PMCID:
PMC2735056
Abstract Full Text PDF–1.1M
Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
Achilleas Tsortos, George Papadakis, Konstantinos Mitsakakis, Kathryn A. Melzak, Electra Gizeli
Biophys J. 2008 April 1; 94(7): 2706–2715. Published online 2008 January 4. doi: 10.1529/biophysj.107.119271
PMCID:
PMC2267124
Abstract Full Text PDF–462K
The Cytochrome P450 Enzyme CYP96A15 Is the Midchain Alkane Hydroxylase Responsible for Formation of Secondary Alcohols and Ketones in Stem Cuticular Wax of Arabidopsis
Stephen Greer, Miao Wen, David Bird, Xuemin Wu, Lacey Samuels, Ljerka Kunst, Reinhard Jetter
Plant Physiol. 2007 November; 145(3): 653–667. doi: 10.1104/pp.107.107300
PMCID:
PMC2048791
Abstract Full Text PDF–1.3M Supplementary Material
Altered target site specificity variants of the I-PpoI His-Cys box homing endonuclease
Jennifer L. Eklund, Umut Y. Ulge, Jennifer Eastberg, Raymond J. Monnat, Jr
Nucleic Acids Res. 2007 September; 35(17): 5839–5850. Published online 2007 July 24. doi: 10.1093/nar/gkm624
PMCID:
PMC2034468
Abstract Full Text PDF–3.5M Supplementary Material
Selecting dissimilar genes for multi-class classification, an application in cancer subtyping
Zhipeng Cai, Randy Goebel, Mohammad R Salavatipour, Guohui Lin
BMC Bioinformatics. 2007; 8: 206. Published online 2007 June 16. doi: 10.1186/1471-2105-8-206
PMCID:
PMC1914361
Abstract Full Text PDF–555K
Residue-Level Prediction of DNA-Binding Sites and its Application on DNA-Binding Protein Predictions
Nitin Bhardwaj, Hui Lu
FEBS Lett. Author manuscript; available in PMC 2008 March 6.
Published in final edited form as: FEBS Lett. 2007 March 6; 581(5): 1058–1066. Published online 2007 February 7. doi: 10.1016/j.febslet.2007.01.086
PMCID:
PMC1993824
Abstract Full Text PDF–554K
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