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Probabilistic annotation of protein sequences based on functional classifications
Emmanuel D Levy, Christos A Ouzounis, Walter R Gilks, Benjamin Audit
BMC Bioinformatics. 2005; 6: 302. Published online 2005 December 14. doi: 10.1186/1471-2105-6-302
PMCID:
PMC1361783
Abstract Full Text PDF–465K Supplementary Material

Is Cited by the Following 12 Articles in this Archive:

Computational Approaches for Automated Classification of Enzyme Sequences
Akram Mohammed, Chittibabu Guda
J Proteomics Bioinform. Author manuscript; available in PMC 2011 November 21.
Published in final edited form as: J Proteomics Bioinform. 2011 August 23; 4: 147–152.
PMCID:
PMC3221388
Abstract Full Text PDF–52K
The what, where, how and why of gene ontology—a primer for bioinformaticians
Louis du Plessis, Nives Škunca, Christophe Dessimoz
Brief Bioinform. 2011 November; 12(6): 723–735. Published online 2011 February 17. doi: 10.1093/bib/bbr002
PMCID:
PMC3220872
Abstract Full Text PDF–921K
Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities
Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge
PLoS One. 2010; 5(12): e14286. Published online 2010 December 13. doi: 10.1371/journal.pone.0014286
PMCID:
PMC3001439
Abstract Full Text PDF–696K Supplementary Material
Sequence-based feature prediction and annotation of proteins
Agnieszka S Juncker, Lars J Jensen, Andrea Pierleoni, Andreas Bernsel, Michael L Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A Ouzounis, Rita Casadio, Søren Brunak
Genome Biol. 2009; 10(2): 206. Published online 2009 February 2. doi: 10.1186/gb-2009-10-2-206
PMCID:
PMC2688272
Abstract Full Text PDF–86K Supplementary Material
Towards a semi-automatic functional annotation tool based on decision-tree techniques
Jérôme Azé, Lucie Gentils, Claire Toffano-Nioche, Valentin Loux, Jean-François Gibrat, Philippe Bessières, Céline Rouveirol, Anne Poupon, Christine Froidevaux
BMC Proc. 2008; 2(Suppl 4): S3. Published online 2008 December 17.
PMCID:
PMC2654970
Abstract Full Text PDF–664K
ProbCD: enrichment analysis accounting for categorization uncertainty
Ricardo ZN Vêncio, Ilya Shmulevich
BMC Bioinformatics. 2007; 8: 383. Published online 2007 October 12. doi: 10.1186/1471-2105-8-383
PMCID:
PMC2169266
Abstract Full Text PDF–308K Supplementary Material
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
Carson Andorf, Drena Dobbs, Vasant Honavar
BMC Bioinformatics. 2007; 8: 284. Published online 2007 August 3. doi: 10.1186/1471-2105-8-284
PMCID:
PMC1994202
Abstract Full Text PDF–467K Supplementary Material
Applying negative rule mining to improve genome annotation
Irena I Artamonova, Goar Frishman, Dmitrij Frishman
BMC Bioinformatics. 2007; 8: 261. Published online 2007 July 21. doi: 10.1186/1471-2105-8-261
PMCID:
PMC1940032
Abstract Full Text PDF–319K Supplementary Material
The 2006 Automated Function Prediction Meeting
Ana PC Rodrigues, Barry J Grant, Adam Godzik, Iddo Friedberg
BMC Bioinformatics. 2007; 8(Suppl 4): S1. Published online 2007 May 22. doi: 10.1186/1471-2105-8-S4-S1
PMCID:
PMC1892079
Full Text PDF–218K
CORRIE: enzyme sequence annotation with confidence estimates
Benjamin Audit, Emmanuel D Levy, Wally R Gilks, Leon Goldovsky, Christos A Ouzounis
BMC Bioinformatics. 2007; 8(Suppl 4): S3. Published online 2007 May 22. doi: 10.1186/1471-2105-8-S4-S3
PMCID:
PMC1892082
Abstract Full Text PDF–412K
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification
Nandini Krishnamurthy, Duncan P Brown, Dan Kirshner, Kimmen Sjölander
Genome Biol. 2006; 7(9): R83. Published online 2006 September 14. doi: 10.1186/gb-2006-7-9-r83
PMCID:
PMC1794543
Abstract Full Text PDF–2.4M Supplementary Material
BayGO: Bayesian analysis of ontology term enrichment in microarray data
Ricardo ZN Vêncio, Tie Koide, Suely L Gomes, Carlos A de B Pereira
BMC Bioinformatics. 2006; 7: 86. Published online 2006 February 23. doi: 10.1186/1471-2105-7-86
PMCID:
PMC1440873
Abstract Full Text PDF–319K Supplementary Material
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