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Long terminal repeat retrotransposons of Oryza sativa
Eugene M McCarthy, Jingdong Liu, Gao Lizhi, John F McDonald
Genome Biol. 2002; 3(10): research0053.1–research0053.11. Published online 2002 September 13.
PMCID:
PMC134482
Abstract Full Text PDF–541K

Is Cited by the Following 18 Articles in this Archive:

Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis
Zhixi Tian, Yanjun Yu, Feng Lin, Yeisoo Yu, Phillip J SanMiguel, Rod A Wing, Susan R McCouch, Jianxin Ma, Scott A Jackson
BMC Genomics. 2011; 12: 142. Published online 2011 March 8. doi: 10.1186/1471-2164-12-142
PMCID:
PMC3060143
Abstract Full Text PDF–530K Supplementary Material
Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?
Alexandros Bousios, Nikos Darzentas, Athanasios Tsaftaris, Stephen R Pearce
BMC Genomics. 2010; 11: 89. Published online 2010 February 4. doi: 10.1186/1471-2164-11-89
PMCID:
PMC2829016
Abstract Full Text PDF–1.3M Supplementary Material
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
Zhixi Tian, Carene Rizzon, Jianchang Du, Liucun Zhu, Jeffrey L. Bennetzen, Scott A. Jackson, Brandon S. Gaut, Jianxin Ma
Genome Res. 2009 December; 19(12): 2221–2230. doi: 10.1101/gr.083899.108
PMCID:
PMC2792168
Abstract Full Text PDF–605K
LTR retrotransposons reveal recent extensive inter-subspecies nonreciprocal recombination in Asian cultivated rice
Hao Wang, Zhao Xu, Hongjie Yu
BMC Genomics. 2008; 9: 565. Published online 2008 November 27. doi: 10.1186/1471-2164-9-565
PMCID:
PMC2612701
Abstract Full Text PDF–417K Supplementary Material
LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice
Hao Wang, Jin-Song Liu
BMC Genomics. 2008; 9: 382. Published online 2008 August 10. doi: 10.1186/1471-2164-9-382
PMCID:
PMC2533021
Abstract Full Text PDF–1.1M Supplementary Material
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
Ryan D. Morin, Gozde Aksay, Elena Dolgosheina, H. Alexander Ebhardt, Vincent Magrini, Elaine R. Mardis, S. Cenk Sahinalp, Peter J. Unrau
Genome Res. 2008 April; 18(4): 571–584. doi: 10.1101/gr.6897308
PMCID:
PMC2279245
Abstract Full Text PDF–946K
Endogenous retroviruses of the chicken genome
Ahsan Huda, Nalini Polavarapu, I King Jordan, John F McDonald
Biol Direct. 2008; 3: 9. Published online 2008 March 24. doi: 10.1186/1745-6150-3-9
PMCID:
PMC2329609
Abstract Full Text PDF–349K
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
BMC Bioinformatics. 2008; 9: 18. Published online 2008 January 14. doi: 10.1186/1471-2105-9-18
PMCID:
PMC2253517
Abstract Full Text PDF–352K Supplementary Material
Transposable element distribution, abundance and role in genome size variation in the genus Oryza
Andrea Zuccolo, Aswathy Sebastian, Jayson Talag, Yeisoo Yu, HyeRan Kim, Kristi Collura, Dave Kudrna, Rod A Wing
BMC Evol Biol. 2007; 7: 152. Published online 2007 August 29. doi: 10.1186/1471-2148-7-152
PMCID:
PMC2041954
Abstract Full Text PDF–822K Supplementary Material
A genome-wide transcriptional activity survey of rice transposable element-related genes
Yuling Jiao, Xing Wang Deng
Genome Biol. 2007; 8(2): R28. Published online 2007 February 27. doi: 10.1186/gb-2007-8-2-r28
PMCID:
PMC1852403
Abstract Full Text PDF–1.2M Supplementary Material
RetrOryza: a database of the rice LTR-retrotransposons
Cristian Chaparro, Romain Guyot, Andrea Zuccolo, Benoît Piégu, Olivier Panaud
Nucleic Acids Res. 2007 January; 35(Database issue): D66–D70. Published online 2006 October 28. doi: 10.1093/nar/gkl780
PMCID:
PMC1635335
Abstract Full Text PDF–643K
Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses
Nalini Polavarapu, Nathan J Bowen, John F McDonald
Genome Biol. 2006; 7(6): R51. Published online 2006 June 28. doi: 10.1186/gb-2006-7-6-r51
PMCID:
PMC1779541
Abstract Full Text PDF–1.1M Supplementary Material
Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice
Jianxin Ma, Scott A. Jackson
Genome Res. 2006 February; 16(2): 251–259. doi: 10.1101/gr.4583106
PMCID:
PMC1361721
Abstract Full Text PDF–472K
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice
Jianxin Ma, Jeffrey L. Bennetzen
Proc Natl Acad Sci U S A. 2006 January 10; 103(2): 383–388. Published online 2005 December 28. doi: 10.1073/pnas.0509810102
PMCID:
PMC1326179
Abstract Full Text PDF–349K Supplementary Material
The Sireviruses, a Plant-Specific Lineage of the Ty1/copia Retrotransposons, Interact with a Family of Proteins Related to Dynein Light Chain 8
Ericka R. Havecker, Xiang Gao, Daniel F. Voytas
Plant Physiol. 2005 October; 139(2): 857–868. doi: 10.1104/pp.105.065680
PMCID:
PMC1256001
Abstract Full Text PDF–628K Supplementary Material
ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong, Jun Wang
PLoS Comput Biol. 2005 September; 1(4): e43. Published online 2005 September 23. doi: 10.1371/journal.pcbi.0010043
PMCID:
PMC1232128
Abstract Full Text PDF–341K Supplementary Material
Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences
Lizhi Gao, Eugene M McCarthy, Eric W Ganko, John F McDonald
BMC Genomics. 2004; 5: 18. Published online 2004 March 2. doi: 10.1186/1471-2164-5-18
PMCID:
PMC373447
Abstract Full Text PDF–428K Supplementary Material
Long terminal repeat retrotransposons of Mus musculus
Eugene M McCarthy, John F McDonald
Genome Biol. 2004; 5(3): R14. Published online 2004 February 13.
PMCID:
PMC395764
Abstract Full Text PDF–182K
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