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Molecular archeology of L1 insertions in the human genome
Suzanne T Szak, Oxana K Pickeral, Wojciech Makalowski, Mark S Boguski, David Landsman, Jef D Boeke
Genome Biol. 2002; 3(10): research0052.1–research0052.18. Published online 2002 September 19.
PMCID:
PMC134481
Abstract Full Text PDF–836K

Is Cited by the Following 26 Articles in this Archive:

A matter of life or death: How microsatellites emerge in and vanish from the human genome
Yogeshwar D. Kelkar, Kristin A. Eckert, Francesca Chiaromonte, Kateryna D. Makova
Genome Res. 2011 December; 21(12): 2038–2048. doi: 10.1101/gr.122937.111
PMCID:
PMC3227094
Free in PMC on 2012/06/01
The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery
Julija Raiz, Annette Damert, Sergiu Chira, Ulrike Held, Sabine Klawitter, Matthias Hamdorf, Johannes Löwer, Wolf H. Strätling, Roswitha Löwer, Gerald G. Schumann
Nucleic Acids Res. 2012 February; 40(4): 1666–1683. Published online 2011 November 2. doi: 10.1093/nar/gkr863
PMCID:
PMC3287187
Abstract Full Text PDF–5.6M Supplementary Material
A Human Genome Structural Variation Sequencing Resource Reveals Insights into Mutational Mechanisms
Jeffrey M. Kidd, Tina Graves, Tera Newman, Robert Fulton, Hillary S. Hayden, Maika Malig, Joelle Kallicki, Rajinder Kaul, Richard K. Wilson, Evan E. Eichler
Cell. Author manuscript; available in PMC 2011 May 24.
Published in final edited form as: Cell. 2010 November 24; 143(5): 837–847. doi: 10.1016/j.cell.2010.10.027
PMCID:
PMC3026629
Abstract Full Text PDF–1.9M Supplementary Material
Characterization of L1 retrotransposition with high-throughput dual-luciferase assays
Yi Xie, James M. Rosser, Tina L. Thompson, Jef D. Boeke, Wenfeng An
Nucleic Acids Res. 2011 February; 39(3): e16. Published online 2010 November 10. doi: 10.1093/nar/gkq1076
PMCID:
PMC3035435
Abstract Full Text PDF–564K Supplementary Material
Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans
Kenji K Kojima
Mob DNA. 2010; 1: 17. Published online 2010 July 8. doi: 10.1186/1759-8753-1-17
PMCID:
PMC2912911
Abstract Full Text PDF–1.5M Supplementary Material
Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions
Jeffrey S Han
Mob DNA. 2010; 1: 15. Published online 2010 May 12. doi: 10.1186/1759-8753-1-15
PMCID:
PMC2881922
Abstract Full Text PDF–1.3M
A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
Miriam K. Konkel, Mark A. Batzer
Semin Cancer Biol. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Semin Cancer Biol. 2010 August; 20(4): 211–221. Published online 2010 March 20. doi: 10.1016/j.semcancer.2010.03.001
PMCID:
PMC2925057
Abstract Full Text PDF–419K
Discovery of short pseudogenes derived from messenger RNAs
Goro Terai, Aya Yoshizawa, Hiroaki Okida, Kiyoshi Asai, Toutai Mituyama
Nucleic Acids Res. 2010 March; 38(4): 1163–1171. Published online 2010 March. doi: 10.1093/nar/gkp1098
PMCID:
PMC2831318
Abstract Full Text PDF–341K Supplementary Material
Heads or tails: L1 insertion-associated 5' homopolymeric sequences
Thomas J Meyer, Deepa Srikanta, Erin M Conlin, Mark A Batzer
Mob DNA. 2010; 1: 7. Published online 2010 February 1. doi: 10.1186/1759-8753-1-7
PMCID:
PMC2837659
Abstract Full Text PDF–3.5M
Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes
Aristotelis Tsirigos, Isidore Rigoutsos
PLoS Comput Biol. 2009 December; 5(12): e1000610. Published online 2009 December 18. doi: 10.1371/journal.pcbi.1000610
PMCID:
PMC2784220
Abstract Full Text PDF–389K Supplementary Material
5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
Annette Damert, Julija Raiz, Axel V. Horn, Johannes Löwer, Hui Wang, Jinchuan Xing, Mark A. Batzer, Roswitha Löwer, Gerald G. Schumann
Genome Res. 2009 November; 19(11): 1992–2008. doi: 10.1101/gr.093435.109
PMCID:
PMC2775593
Abstract Full Text PDF–2.1M
Internal Priming: An opportunistic pathway for L1 & Alu retrotransposition in Hominins
Deepa Srikanta, Shurjo K. Sen, Erin M. Conlin, Mark A. Batzer
Gene. Author manuscript; available in PMC 2010 December 15.
Published in final edited form as: Gene. 2009 December 15; 448(2): 233–241. Published online 2009 June 6. doi: 10.1016/j.gene.2009.05.014
PMCID:
PMC2784234
Abstract Full Text PDF–1.1M
Automated paleontology of repetitive DNA with REANNOTATE
Vini Pereira
BMC Genomics. 2008; 9: 614. Published online 2008 December 18. doi: 10.1186/1471-2164-9-614
PMCID:
PMC2672092
Abstract Full Text PDF–521K Supplementary Material
An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair
Deepa Srikanta, Shurjo K. Sen, Charles T. Huang, Erin Conlin, Ryan Rhodes, Mark A. Batzer
Genomics. Author manuscript; available in PMC 2010 March 1.
Published in final edited form as: Genomics. 2009 March; 93(3): 205–212. Published online 2008 November 11. doi: 10.1016/j.ygeno.2008.09.016
PMCID:
PMC2672417
Abstract Full Text PDF–1.0M Supplementary Material
Transduplication resulted in the incorporation of two protein-coding sequences into the Turmoil-1 transposable element of C. elegans
Noa Sela, Adi Stern, Wojciech Makalowski, Tal Pupko, Gil Ast
Biol Direct. 2008; 3: 41. Published online 2008 October 8. doi: 10.1186/1745-6150-3-41
PMCID:
PMC2572040
Abstract Full Text PDF–2.2M
Nucleoside Analogue Reverse Transcriptase Inhibitors Differentially Inhibit Human LINE-1 Retrotransposition
R. Brad Jones, Keith E. Garrison, Jessica C. Wong, Erick H. Duan, Douglas F. Nixon, Mario A. Ostrowski
PLoS ONE. 2008; 3(2): e1547. Published online 2008 February 6. doi: 10.1371/journal.pone.0001547
PMCID:
PMC2212136
Abstract Full Text PDF–154K
A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids
Daria V. Babushok, Kazuhiko Ohshima, Eric M. Ostertag, Xinsheng Chen, Yanfeng Wang, Prabhat K. Mandal, Norihiro Okada, Charles S. Abrams, Haig H. Kazazian, Jr.
Genome Res. 2007 August; 17(8): 1129–1138. doi: 10.1101/gr.6252107
PMCID:
PMC1933510
Abstract Full Text PDF–582K
Mammalian Small Nucleolar RNAs Are Mobile Genetic Elements
Michel J Weber
PLoS Genet. 2006 December; 2(12): e205. Prepublished online 2006 October 20. Published online 2006 December 8. doi: 10.1371/journal.pgen.0020205
Correction in:
PLoS Genet. 2007 February; 3(2): e36.
PMCID:
PMC1687206
Abstract Full Text PDF–475K Supplementary Material Correction
Active retrotransposition by a synthetic L1 element in mice
Wenfeng An, Jeffrey S. Han, Sarah J. Wheelan, Edward S. Davis, Candice E. Coombes, Ping Ye, Christina Triplett, Jef D. Boeke
Proc Natl Acad Sci U S A. 2006 December 5; 103(49): 18662–18667. Published online 2006 November 21. doi: 10.1073/pnas.0605300103
PMCID:
PMC1693719
Abstract Full Text PDF–1.0M Supplementary Material
Transposon insertion site profiling chip (TIP-chip)
Sarah J. Wheelan, Lisa Z. Scheifele, Francisco Martínez-Murillo, Rafael A. Irizarry, Jef D. Boeke
Proc Natl Acad Sci U S A. 2006 November 21; 103(47): 17632–17637. Published online 2006 November 13. doi: 10.1073/pnas.0605450103
PMCID:
PMC1693798
Abstract Full Text PDF–847K Supplementary Material
Repetitive sequence environment distinguishes housekeeping genes
C. Daniel Eller, Moira Regelson, Barry Merriman, Stan Nelson, Steve Horvath, York Marahrens
Gene. Author manuscript; available in PMC 2007 April 26.
Published in final edited form as: Gene. 2007 April 1; 390(1-2): 153–165. Published online 2006 October 5. doi: 10.1016/j.gene.2006.09.018
PMCID:
PMC1857324
Abstract Full Text PDF–769K Supplementary Material
The Potential Regulation of L1 Mobility by RNA Interference
Shane R. Horman, Petr Svoboda, Eline T. Luning Prak
J Biomed Biotechnol. 2006; 2006: 32713. Published online 2006 March 20. doi: 10.1155/JBB/2006/32713
PMCID:
PMC1559915
Abstract Full Text PDF–616K
Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay
Evan A. Farkash, Gary D. Kao, Shane R. Horman, Eline T. Luning Prak
Nucleic Acids Res. 2006; 34(4): 1196–1204. Published online 2006 February 28. doi: 10.1093/nar/gkj522
PMCID:
PMC1385994
Abstract Full Text PDF–295K Supplementary Material
L1 integration in a transgenic mouse model
Daria V. Babushok, Eric M. Ostertag, Christine E. Courtney, Janice M. Choi, Haig H. Kazazian, Jr.
Genome Res. 2006 February; 16(2): 240–250. doi: 10.1101/gr.4571606
PMCID:
PMC1361720
Abstract Full Text PDF–606K
Evolutionary diversity and potential recombinogenic role of integration targets of non-LTR retrotransposons
Andrew J. Gentles, Oleksiy Kohany, Jerzy Jurka
Mol Biol Evol. Author manuscript; available in PMC 2006 October 1.
Published in final edited form as: Mol Biol Evol. 2005 October; 22(10): 1983–1991. Published online 2005 June 8. doi: 10.1093/molbev/msi188
PMCID:
PMC1400617
Abstract Full Text PDF–1.1M
Identifying related L1 retrotransposons by analyzing 3' transduced sequences
Suzanne T Szak, Oxana K Pickeral, David Landsman, Jef D Boeke
Genome Biol. 2003; 4(5): R30. Published online 2003 April 16. doi: 10.1186/gb-2003-4-5-r30
PMCID:
PMC156586
Abstract Full Text PDF–306K Supplementary Material
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