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Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
Robert K Tran, Daniel Zilberman, Cecilia de Bustos, Renata F Ditt, Jorja G Henikoff, Anders M Lindroth, Jeffrey Delrow, Tom Boyle, Samson Kwong, Terri D Bryson, Steven E Jacobsen, Steven Henikoff
Genome Biol. 2005; 6(11): R90. Published online 2005 October 19. doi: 10.1186/gb-2005-6-11-r90
PMCID:
PMC1297646
Abstract Full Text PDF–385K
 Is Cited by the Following 19 Articles in this Archive:
In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning
Maria Greco, Adriana Chiappetta, Leonardo Bruno, Maria Beatrice Bitonti
J Exp Bot. 2012 January; 63(2): 695–709. Published online 2011 November 4. doi: 10.1093/jxb/err313
PMCID:
PMC3254685
Abstract Full Text PDF–1.0M Supplementary Material
Suppression of Methylation-Mediated Transcriptional Gene Silencing by βC1-SAHH Protein Interaction during Geminivirus-Betasatellite Infection
Xiuling Yang, Yan Xie, Priya Raja, Sizhun Li, Jamie N. Wolf, Qingtang Shen, David M. Bisaro, Xueping Zhou
PLoS Pathog. 2011 October; 7(10): e1002329. Published online 2011 October 20. doi: 10.1371/journal.ppat.1002329
PMCID:
PMC3197609
Abstract Full Text PDF–1.5M Supplementary Material
High-throughput approaches for plant epigenomic studies
Robert J Schmitz, Xiaoyu Zhang
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 October 4.
Published in final edited form as: Curr Opin Plant Biol. 2011 April; 14(2): 130–136. Published online 2011 April 4. doi: 10.1016/j.pbi.2011.03.010
PMCID:
PMC3112054
Abstract Full Text PDF–158K
Local DNA hypomethylation activates genes in rice endosperm
Assaf Zemach, M. Yvonne Kim, Pedro Silva, Jessica A. Rodrigues, Bradley Dotson, Matthew D. Brooks, Daniel Zilberman
Proc Natl Acad Sci U S A. 2010 October 26; 107(43): 18729–18734. Published online 2010 October 11. doi: 10.1073/pnas.1009695107
PMCID:
PMC2972920
Abstract Full Text PDF–1.5M Supplementary Material
Production and Processing of siRNA Precursor Transcripts from the Highly Repetitive Maize Genome
Christopher J. Hale, Karl F. Erhard, Jr., Damon Lisch, Jay B. Hollick
PLoS Genet. 2009 August; 5(8): e1000598. Published online 2009 August 14. doi: 10.1371/journal.pgen.1000598
PMCID:
PMC2725412
Abstract Full Text PDF–1.4M Supplementary Material
Geminivirus AL2 and L2 Proteins Suppress Transcriptional Gene Silencing and Cause Genome-Wide Reductions in Cytosine Methylation
R. Cody Buchmann, Shaheen Asad, Jamie N. Wolf, Gireesha Mohannath, David M. Bisaro
J Virol. 2009 May; 83(10): 5005–5013. Published online 2009 March 11. doi: 10.1128/JVI.01771-08
PMCID:
PMC2682068
Abstract Full Text PDF–1.2M Supplementary Material
Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana
Yana V. Bernatavichute, Xiaoyu Zhang, Shawn Cokus, Matteo Pellegrini, Steven E. Jacobsen
PLoS ONE. 2008; 3(9): e3156. Published online 2008 September 8. doi: 10.1371/journal.pone.0003156
PMCID:
PMC2522283
Abstract Full Text PDF–660K Supplementary Material
DNA Methylation and Demethylation in Arabidopsis
Mary Gehring, Steven Henikoff
Arabidopsis Book. 2008; 6: e0102. Published online 2008 May 23. doi: 10.1199/tab.0102
PMCID:
PMC3243302
Full Text PDF–877K
Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing
J. Armando Casas-Mollano, Jennifer Rohr, Eun-Jeong Kim, Eniko Balassa, Karin van Dijk, Heriberto Cerutti
Genetics. 2008 May; 179(1): 69–81. doi: 10.1534/genetics.107.086546
PMCID:
PMC2390644
Abstract Full Text PDF–1.1M
Small RNA-Directed Epigenetic Natural Variation in Arabidopsis thaliana
Jixian Zhai, Jun Liu, Bin Liu, Pingchuan Li, Blake C. Meyers, Xuemei Chen, Xiaofeng Cao
PLoS Genet. 2008 April; 4(4): e1000056. Published online 2008 April 25. doi: 10.1371/journal.pgen.1000056
PMCID:
PMC2289841
Abstract Full Text PDF–602K Supplementary Material
Rice transposable elements are characterized by various methylation environments in the genome
Miwako Takata, Akihiro Kiyohara, Atsuko Takasu, Yuji Kishima, Hisako Ohtsubo, Yoshio Sano
BMC Genomics. 2007; 8: 469. Published online 2007 December 20. doi: 10.1186/1471-2164-8-469
PMCID:
PMC2222647
Abstract Full Text PDF–1.7M Supplementary Material
Differential Epigenetic Regulation Within an Arabidopsis Retroposon Family
Sanjida H. Rangwala, Eric J. Richards
Genetics. 2007 May; 176(1): 151–160. doi: 10.1534/genetics.107.071092
PMCID:
PMC1893068
Abstract Full Text PDF–617K
Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting
Miya D. Howell, Noah Fahlgren, Elisabeth J. Chapman, Jason S. Cumbie, Christopher M. Sullivan, Scott A. Givan, Kristin D. Kasschau, James C. Carrington
Plant Cell. 2007 March; 19(3): 926–942. doi: 10.1105/tpc.107.050062
PMCID:
PMC1867363
Abstract Full Text PDF–2.2M
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
Noah Fahlgren, Miya D. Howell, Kristin D. Kasschau, Elisabeth J. Chapman, Christopher M. Sullivan, Jason S. Cumbie, Scott A. Givan, Theresa F. Law, Sarah R. Grant, Jeffery L. Dangl, James C. Carrington
PLoS ONE. 2007; 2(2): e219. Published online 2007 February 14. doi: 10.1371/journal.pone.0000219
PMCID:
PMC1790633
Abstract Full Text PDF–687K Supplementary Material
Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
Kristin D Kasschau, Noah Fahlgren, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, James C Carrington
PLoS Biol. 2007 March; 5(3): e57. Published online 2007 February 13. doi: 10.1371/journal.pbio.0050057
PMCID:
PMC1820830
Abstract Full Text PDF–11M Supplementary Material
SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice
Yong Ding, Xia Wang, Lei Su, JiXian Zhai, ShouYun Cao, DongFen Zhang, ChunYan Liu, YuPing Bi, Qian Qian, ZhuKuan Cheng, ChengCai Chu, XiaoFeng Cao
Plant Cell. 2007 January; 19(1): 9–22. doi: 10.1105/tpc.106.048124
PMCID:
PMC1820975
Abstract Full Text PDF–1.8M Supplementary Material
MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis
Isabelle Vaillant, Ingo Schubert, Sylvette Tourmente, Olivier Mathieu
EMBO Rep. 2006 December; 7(12): 1273–1278. Published online 2006 November 3. doi: 10.1038/sj.embor.7400791
PMCID:
PMC1794702
Abstract Full Text PDF–195K Supplementary Material
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
Bruno Huettel, Tatsuo Kanno, Lucia Daxinger, Werner Aufsatz, Antonius J M Matzke, Marjori Matzke
EMBO J. 2006 June 21; 25(12): 2828–2836. Published online 2006 May 25. doi: 10.1038/sj.emboj.7601150
PMCID:
PMC1500864
Abstract Full Text PDF–256K Supplementary Material
On the origin and functions of RNA-mediated silencing: from protists to man
Heriberto Cerutti, J. Armando Casas-Mollano
Curr Genet. Author manuscript; available in PMC 2008 November 14.
Published in final edited form as: Curr Genet. 2006 August; 50(2): 81–99. Published online 2006 May 12. doi: 10.1007/s00294-006-0078-x
PMCID:
PMC2583075
Abstract Full Text PDF–1.4M
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