My NCBISign In
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
Penelope R Haddrill, Brian Charlesworth, Daniel L Halligan, Peter Andolfatto
Genome Biol. 2005; 6(8): R67. Published online 2005 July 27. doi: 10.1186/gb-2005-6-8-r67
PMCID:
PMC1273634
Abstract Full Text PDF–260K Supplementary Material

Is Cited by the Following 52 Articles in this Archive:

The Role of Background Selection in Shaping Patterns of Molecular Evolution and Variation: Evidence from Variability on the Drosophila X Chromosome
Brian Charlesworth
Genetics. 2012 May; 191(1): 233–246. doi: 10.1534/genetics.111.138073
PMCID:
PMC3338263
Free in PMC on 2013/05/01
Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome
Robert S. Young, Ana C. Marques, Charlotte Tibbit, Wilfried Haerty, Andrew R. Bassett, Ji-Long Liu, Chris P. Ponting
Genome Biol Evol. 2012; 4(4): 427–442. Published online 2012 March 8. doi: 10.1093/gbe/evs020
PMCID:
PMC3342871
Abstract Full Text PDF–970K
The Effects of Deleterious Mutations on Evolution at Linked Sites
Brian Charlesworth
Genetics. 2012 January; 190(1): 5–22. doi: 10.1534/genetics.111.134288
PMCID:
PMC3249359
Free in PMC on 2013/01/01
Negative Correlation between Expression Level and Evolutionary Rate of Long Intergenic Noncoding RNAs
David Managadze, Igor B. Rogozin, Diana Chernikova, Svetlana A. Shabalina, Eugene V. Koonin
Genome Biol Evol. 2011; 3: 1390–1404. Published online 2011 November 9. doi: 10.1093/gbe/evr116
PMCID:
PMC3242500
Abstract Full Text PDF–722K
Genomic Sequence around Butterfly Wing Development Genes: Annotation and Comparative Analysis
Inês C. Conceição, Anthony D. Long, Jonathan D. Gruber, Patrícia Beldade
PLoS One. 2011; 6(8): e23778. Published online 2011 August 31. doi: 10.1371/journal.pone.0023778
PMCID:
PMC3166123
Abstract Full Text PDF–446K Supplementary Material
The Genomic Signature of Splicing-Coupled Selection Differs between Long and Short Introns
Ashley Farlow, Marlies Dolezal, Liushuai Hua, Christian Schlötterer
Mol Biol Evol. 2012 January; 29(1): 21–24. Published online 2011 August 30. doi: 10.1093/molbev/msr201
PMCID:
PMC3245539
Abstract Full Text PDF–418K Supplementary Material
Contrasting 5' and 3' Evolutionary Histories and Frequent Evolutionary Convergence in Meis/hth Gene Structures
Manuel Irimia, Ignacio Maeso, Demián Burguera, Matías Hidalgo-Sánchez, Luis Puelles, Scott W. Roy, Jordi Garcia-Fernàndez, José Luis Ferran
Genome Biol Evol. 2011; 3: 551–564. Published online 2011 June 16. doi: 10.1093/gbe/evr056
PMCID:
PMC3140891
Abstract Full Text PDF–702K
Both Size and GC-Content of Minimal Introns Are Selected in Human Populations
Dapeng Wang, Jun Yu
PLoS One. 2011; 6(3): e17945. Published online 2011 March 17. doi: 10.1371/journal.pone.0017945
PMCID:
PMC3060096
Abstract Full Text PDF–337K
Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species
Peter Andolfatto, Karen M. Wong, Doris Bachtrog
Genome Biol Evol. 2011; 3: 114–128. Published online 2010 December 20. doi: 10.1093/gbe/evq086
PMCID:
PMC3038356
Abstract Full Text PDF–611K
The Effects of Demography and Linkage on the Estimation of Selection and Mutation Parameters
Kai Zeng, Brian Charlesworth
Genetics. 2010 December; 186(4): 1411–1424. doi: 10.1534/genetics.110.122150
PMCID:
PMC2998320
Abstract Full Text PDF–2.0M
Odorant Receptor (Or) Genes: Polymorphism and Divergence in the D. melanogaster and D. pseudoobscura Lineages
Inês C. Conceição, Montserrat Aguadé
PLoS One. 2010; 5(10): e13389. Published online 2010 October 13. doi: 10.1371/journal.pone.0013389
PMCID:
PMC2954185
Abstract Full Text PDF–152K Supplementary Material
Massive turnover of functional sequence in human and other mammalian genomes
Stephen Meader, Chris P. Ponting, Gerton Lunter
Genome Res. 2010 October; 20(10): 1335–1343. doi: 10.1101/gr.108795.110
PMCID:
PMC2945182
Abstract Full Text PDF–457K
Selection for the compactness of highly expressed genes in Gallus gallus
You S Rao, Zhang F Wang, Xue W Chai, Guo Z Wu, Ming Zhou, Qing H Nie, Xi Q Zhang
Biol Direct. 2010; 5: 35. Published online 2010 May 14. doi: 10.1186/1745-6150-5-35
PMCID:
PMC2883972
Abstract Full Text PDF–831K Supplementary Material
On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila
John Parsch, Sergey Novozhilov, Sarah S. Saminadin-Peter, Karen M. Wong, Peter Andolfatto
Mol Biol Evol. 2010 June; 27(6): 1226–1234. Published online 2010 February 11. doi: 10.1093/molbev/msq046
PMCID:
PMC2877998
Abstract Full Text Supplementary Material
Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3
Nikolai P Kandul, Mohamed AF Noor
BMC Genet. 2009; 10: 67. Published online 2009 October 19. doi: 10.1186/1471-2156-10-67
PMCID:
PMC2767349
Abstract Full Text PDF–1.4M Supplementary Material
Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus
Richard C. Edmunds, Lynne van Herwerden, Carolyn Smith-Keune, Dean R. Jerry
Int J Biol Sci. 2009; 5(6): 558–569. Published online 2009 September 1.
PMCID:
PMC2737716
Abstract Full Text PDF–683K
Recombination Rates May Affect the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila melanogaster
Beatriz Vicoso, Brian Charlesworth
Genetics. 2009 April; 181(4): 1699–1701. doi: 10.1534/genetics.108.098004
PMCID:
PMC2666533
Full Text PDF–54K
Patterns of exon-intron architecture variation of genes in eukaryotic genomes
Liucun Zhu, Ying Zhang, Wen Zhang, Sihai Yang, Jian-Qun Chen, Dacheng Tian
BMC Genomics. 2009; 10: 47. Published online 2009 January 24. doi: 10.1186/1471-2164-10-47
PMCID:
PMC2636830
Abstract Full Text PDF–1.7M Supplementary Material
The effect of intron length on exon creation ratios during the evolution of mammalian genomes
Meenakshi Roy, Namshin Kim, Yi Xing, Christopher Lee
RNA. 2008 November; 14(11): 2261–2273. doi: 10.1261/rna.1024908
PMCID:
PMC2578852
Abstract Full Text PDF–944K
Positive Selection at the Binding Sites of the Male-Specific Lethal Complex Involved in Dosage Compensation in Drosophila
Doris Bachtrog
Genetics. 2008 October; 180(2): 1123–1129. doi: 10.1534/genetics.107.084244
PMCID:
PMC2567361
Abstract Full Text PDF–97K
Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over
Penelope R Haddrill, Fergal M Waldron, Brian Charlesworth
Biol Lett. 2008 December 23; 4(6): 758–761. Published online 2008 September 9. doi: 10.1098/rsbl.2008.0376
PMCID:
PMC2614156
Abstract Full Text PDF–107K
Mutagenesis from Meiotic Recombination Is Not a Primary Driver of Sequence Divergence between Saccharomyces Species
Mohamed A. F. Noor
Mol Biol Evol. 2008 November; 25(11): 2439–2444. Published online 2008 August 22. doi: 10.1093/molbev/msn186
PMCID:
PMC2727390
Abstract Full Text PDF–118K Supplementary Material
Positive and Negative Selection on Noncoding DNA in Drosophila simulans
Penelope R. Haddrill, Doris Bachtrog, Peter Andolfatto
Mol Biol Evol. 2008 September; 25(9): 1825–1834. Published online 2008 May 29. doi: 10.1093/molbev/msn125
PMCID:
PMC2734132
Abstract Full Text PDF–290K Supplementary Material
Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
Yi-Fei Huang, Deng-Ke Niu
BMC Evol Biol. 2008; 8: 154. Published online 2008 May 20. doi: 10.1186/1471-2148-8-154
PMCID:
PMC2424036
Abstract Full Text PDF–355K Supplementary Material
Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster
Thomas L. Turner, Mia T. Levine, Melissa L. Eckert, David J. Begun
Genetics. 2008 May; 179(1): 455–473. doi: 10.1534/genetics.107.083659
PMCID:
PMC2390623
Abstract Full Text PDF–1.6M
Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila
Steffen Beisswanger, Wolfgang Stephan
Proc Natl Acad Sci U S A. 2008 April 8; 105(14): 5447–5452. Published online 2008 April 1. doi: 10.1073/pnas.0710892105
PMCID:
PMC2291077
Abstract Full Text PDF–379K
Rapid Evolution of Yeast Centromeres in the Absence of Drive
Douda Bensasson, Magdalena Zarowiecki, Austin Burt, Vassiliki Koufopanou
Genetics. 2008 April; 178(4): 2161–2167. doi: 10.1534/genetics.107.083980
PMCID:
PMC2323805
Abstract Full Text PDF–1.0M
Nonadaptive Explanations for Signatures of Partial Selective Sweeps in Drosophila
J. Michael Macpherson, Josefa González, Daniela M. Witten, Jerel C. Davis, Noah A. Rosenberg, Aaron E. Hirsh, Dmitri A. Petrov
Mol Biol Evol. 2008 June; 25(6): 1025–1042. Published online 2008 January 16. doi: 10.1093/molbev/msn007
PMCID:
PMC3299400
Abstract Full Text
Genome Organization and Gene Expression Shape the Transposable Element Distribution in the Drosophila melanogaster Euchromatin
Pierre Fontanillas, Daniel L Hartl, Max Reuter
PLoS Genet. 2007 November; 3(11): e210. Prepublished online 2007 October 9. Published online 2007 November 30. doi: 10.1371/journal.pgen.0030210
PMCID:
PMC2098804
Abstract Full Text PDF–397K Supplementary Material
Molecular Variation at a Candidate Gene Implicated in the Regulation of Fire Ant Social Behavior
Dietrich Gotzek, D. DeWayne Shoemaker, Kenneth G. Ross
PLoS ONE. 2007; 2(11): e1088. Published online 2007 November 7. doi: 10.1371/journal.pone.0001088
PMCID:
PMC2043488
Abstract Full Text PDF–646K Supplementary Material
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk