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Journal List > Biophys J > v.63(3); Sep 1992

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Biophys J. 1992 September; 63(3): 751–759.
PMCID: PMC1262208
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The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.
H M Berman, W K Olson, D L Beveridge, J Westbrook, A Gelbin, T Demeny, S H Hsieh, A R Srinivasan, and B Schneider
Department of Chemistry, Rutgers University, New Brunswick, New Jersey 08903.
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Selected References
These references are in PubMed. This may not be the complete list of references from this article.
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  • Dickerson RE, Drew HR, Conner BN, Wing RM, Fratini AV, Kopka ML. The anatomy of A-, B-, and Z-DNA. Science. 1982 Apr 30;216(4545):475–485. [PubMed]
  • Shakked Z, Rabinovich D. The effect of the base sequence on the fine structure of the DNA double helix. Prog Biophys Mol Biol. 1986;47(3):159–195. [PubMed]
  • Bernstein FC, Koetzle TF, Williams GJ, Meyer EF, Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol. 1977 May 25;112(3):535–542. [PubMed]
  • Grzeskowiak K, Yanagi K, Privé GG, Dickerson RE. The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals. J Biol Chem. 1991 May 15;266(14):8861–8883. [PubMed]
  • Lavery R, Sklenar H. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J Biomol Struct Dyn. 1988 Aug;6(1):63–91. [PubMed]
  • Ravishanker G, Swaminathan S, Beveridge DL, Lavery R, Sklenar H. Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows. J Biomol Struct Dyn. 1989 Feb;6(4):669–699. [PubMed]
  • Westhof E, Dumas P, Moras D. Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol. 1985 Jul 5;184(1):119–145. [PubMed]
  • Srinivasan AR, Olson WK. Yeast tRNAPhe conformation wheels: a novel probe of the monoclinic and orthorhombic models. Nucleic Acids Res. 1980 May 24;8(10):2307–2329. [PubMed]
  • Richardson DC, Richardson JS. The kinemage: a tool for scientific communication. Protein Sci. 1992 Jan;1(1):3–9. [PubMed]
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