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A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs
Reut Shalgi, Michal Lapidot, Ron Shamir, Yitzhak Pilpel
Genome Biol. 2005; 6(10): R86. Published online 2005 September 30. doi: 10.1186/gb-2005-6-10-r86
PMCID:
PMC1257469
Abstract Full Text PDF–567K
 Is Cited by the Following 16 Articles in this Archive:
Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions
Zhiming Dai, Xianhua Dai
PLoS Comput Biol. 2011 November; 7(11): e1002275. Published online 2011 November 17. doi: 10.1371/journal.pcbi.1002275
PMCID:
PMC3219629
Abstract Full Text PDF–1.9M Supplementary Material
Coupled Evolution of Transcription and mRNA Degradation
Mally Dori-Bachash, Efrat Shema, Itay Tirosh
PLoS Biol. 2011 July; 9(7): e1001106. Published online 2011 July 19. doi: 10.1371/journal.pbio.1001106
PMCID:
PMC3139634
Abstract Full Text PDF–340K Supplementary Material
Tinkering Evolution of Post-Transcriptional RNA Regulons: Puf3p in Fungi as an Example
Huifeng Jiang, Wenjun Guan, Zhenglong Gu
PLoS Genet. 2010 July; 6(7): e1001030. Published online 2010 July 22. doi: 10.1371/journal.pgen.1001030
PMCID:
PMC2908677
Abstract Full Text PDF–1.1M Supplementary Material
Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium
Francesco Catania, Michael Lynch
BMC Evol Biol. 2010; 10: 129. Published online 2010 May 4. doi: 10.1186/1471-2148-10-129
PMCID:
PMC2874801
Abstract Full Text PDF–652K Supplementary Material
Localization of mRNAs coding for peroxisomal proteins in the yeast, Saccharomyces cerevisiae
Gadi Zipor, Liora Haim-Vilmovsky, Rita Gelin-Licht, Noga Gadir, Cecile Brocard, Jeffrey E. Gerst
Proc Natl Acad Sci U S A. 2009 November 24; 106(47): 19848–19853. Published online 2009 November 10. doi: 10.1073/pnas.0910754106
PMCID:
PMC2785255
Abstract Full Text PDF–1.1M Supplementary Material
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Pierre R Bushel, Nicholas A Heard, Roee Gutman, Liwen Liu, Shyamal D Peddada, Saumyadipta Pyne
BMC Syst Biol. 2009; 3: 93. Published online 2009 September 16. doi: 10.1186/1752-0509-3-93
PMCID:
PMC2758837
Abstract Full Text PDF–988K Supplementary Material
Properties of untranslated regions of the S. cerevisiae genome
Tamir Tuller, Eytan Ruppin, Martin Kupiec
BMC Genomics. 2009; 10: 391. Published online 2009 August 22. doi: 10.1186/1471-2164-10-391
PMCID:
PMC2737003
Abstract Full Text PDF–757K Supplementary Material
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae
Lorena Romero-Santacreu, Joaquín Moreno, José E. Pérez-Ortín, Paula Alepuz
RNA. 2009 June; 15(6): 1110–1120. doi: 10.1261/rna.1435709
PMCID:
PMC2685517
Abstract Full Text PDF–763K
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
Nicola Soranzo, Mattia Zampieri, Lorenzo Farina, Claudio Altafini
BMC Syst Biol. 2009; 3: 18. Published online 2009 February 6. doi: 10.1186/1752-0509-3-18
PMCID:
PMC2677395
Abstract Full Text PDF–1.0M Supplementary Material
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
Ophir Shalem, Orna Dahan, Michal Levo, Maria Rodriguez Martinez, Itay Furman, Eran Segal, Yitzhak Pilpel
Mol Syst Biol. 2008; 4: 223. Published online 2008 October 14. doi: 10.1038/msb.2008.59
PMCID:
PMC2583085
Abstract Full Text PDF–1.2M Supplementary Material
Positional Cloning of “Lisch-like”, a Candidate Modifier of Susceptibility to Type 2 Diabetes in Mice
Marija Dokmanovic-Chouinard, Wendy K. Chung, Jean-Claude Chevre, Elizabeth Watson, Jason Yonan, Beebe Wiegand, Yana Bromberg, Nao Wakae, Chris V. Wright, John Overton, Sujoy Ghosh, Ganesh M. Sathe, Carina E. Ammala, Kathleen K. Brown, Rokuro Ito, Charles LeDuc, Keely Solomon, Stuart G. Fischer, Rudolph L. Leibel
PLoS Genet. 2008 July; 4(7): e1000137. Published online 2008 July 25. doi: 10.1371/journal.pgen.1000137
PMCID:
PMC2464733
Abstract Full Text PDF–943K Supplementary Material
The 3′-UTR mediates the cellular localization of an mRNA encoding a short plasma membrane protein
Adi Loya, Lilach Pnueli, Yahav Yosefzon, Ydo Wexler, Michal Ziv-Ukelson, Yoav Arava
RNA. 2008 July; 14(7): 1352–1365. doi: 10.1261/rna.867208
PMCID:
PMC2441994
Abstract Full Text PDF–891K
Global and Local Architecture of the Mammalian microRNA–Transcription Factor Regulatory Network
Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel
PLoS Comput Biol. 2007 July; 3(7): e131. Published online 2007 July 13. doi: 10.1371/journal.pcbi.0030131
PMCID:
PMC1914371
Abstract Full Text PDF–744K Supplementary Material
Mutations in the 3'-untranslated region of GATA4 as molecular hotspots for congenital heart disease (CHD)
Stella Marie Reamon-Buettner, Si-Hyen Cho, Juergen Borlak
BMC Med Genet. 2007; 8: 38. Published online 2007 June 25. doi: 10.1186/1471-2350-8-38
PMCID:
PMC1933416
Abstract Full Text PDF–797K
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions
Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F Stadler, Kay Nieselt
BMC Biol. 2007; 5: 25. Published online 2007 June 18. doi: 10.1186/1741-7007-5-25
PMCID:
PMC1914338
Abstract Full Text PDF–1.0M Supplementary Material
Signatures from Tissue-specific MPSS Libraries Identify Transcripts Preferentially Expressed in the Mouse Inner Ear
Linda M. Peters, Inna A. Belyantseva, Ayala Lagziel, James F. Battey, Thomas B. Friedman, Robert J. Morell
Genomics. Author manuscript; available in PMC 2007 April 2.
Published in final edited form as: Genomics. 2007 February; 89(2): 197–206. Published online 2006 October 17. doi: 10.1016/j.ygeno.2006.09.006
PMCID:
PMC1847387
Abstract Full Text PDF–1.3M Supplementary Material
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