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PubNet: a flexible system for visualizing literature derived networks
Shawn M Douglas, Gaetano T Montelione, Mark Gerstein
Genome Biol. 2005; 6(9): R80. Published online 2005 August 16. doi: 10.1186/gb-2005-6-9-r80
PMCID:
PMC1242215
Abstract Full Text PDF–917K
 Is Cited by the Following 14 Articles in this Archive:
Informatics Technology Mimics Ecology: Dense, Mutualistic Collaboration Networks Are Associated with Higher Publication Rates
Marco D. Sorani
PLoS One. 2012; 7(1): e30463. Published online 2012 January 18. doi: 10.1371/journal.pone.0030463
PMCID:
PMC3261203
Abstract Full Text PDF–597K Supplementary Material
SEACOIN – An Investigative Tool for Biomedical Informatics Researchers
Eva K. Lee, Hee-Rin Lee, Alexander Quarshie
AMIA Annu Symp Proc. 2011; 2011: 750–759. Published online 2011 October 22.
PMCID:
PMC3243266
Abstract Full Text PDF–311K
Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia
Philip E. Bourne
PLoS Comput Biol. 2011 January; 7(1): e1002001. Published online 2011 January 6. doi: 10.1371/journal.pcbi.1002001
PMCID:
PMC3017106
Full Text PDF–67K Supplementary Material
Getting Started in Text Mining: Part Two
Andrey Rzhetsky, Michael Seringhaus, Mark B. Gerstein
PLoS Comput Biol. 2009 July; 5(7): e1000411. Published online 2009 July 31. doi: 10.1371/journal.pcbi.1000411
PMCID:
PMC2709911
Full Text PDF–205K
Literature Mapping with PubAtlas — extending PubMed with a ‘BLASTing interface’
D.S. Parker, W.W. Chu, F.W. Sabb, A.W. Toga, R.M. Bilder
Summit on Translat Bioinforma. 2009; 2009: 90–94. Published online 2009 March 1.
PMCID:
PMC3041555
Abstract Full Text PDF–1.0M
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
Martin Krallinger, Alfonso Valencia, Lynette Hirschman
Genome Biol. 2008; 9(Suppl 2): S8. Published online 2008 September 1. doi: 10.1186/gb-2008-9-s2-s8
PMCID:
PMC2559992
Abstract Full Text PDF–2.6M
BioLit: integrating biological literature with databases
J. Lynn Fink, Sergey Kushch, Parker R. Williams, Philip E. Bourne
Nucleic Acids Res. 2008 July 1; 36(Web Server issue): W385–W389. Published online 2008 July 1. doi: 10.1093/nar/gkn317
PMCID:
PMC2447735
Abstract Full Text PDF–773K
Open Access: Taking Full Advantage of the Content
Philip E. Bourne, J. Lynn Fink, Mark Gerstein
PLoS Comput Biol. 2008 March; 4(3): e1000037. Published online 2008 March 28. doi: 10.1371/journal.pcbi.1000037
PMCID:
PMC2275780
Full Text PDF–75K
Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results
Neil R Smalheiser, Wei Zhou, Vetle I Torvik
J Biomed Discov Collab. 2008; 3: 2. Published online 2008 February 15. doi: 10.1186/1747-5333-3-2
PMCID:
PMC2276193
Abstract Full Text PDF–678K
A Scientific Collaboration Tool Built on the Facebook Platform
Steven D. Bedrick, Dean F. Sittig
AMIA Annu Symp Proc. 2008; 2008: 41–45. Published online 2008.
PMCID:
PMC2656030
Abstract Full Text PDF–276K
RNAi Development
Mark Gerstein, Shawn M Douglas
PLoS Comput Biol. 2007 April; 3(4): e80. Published online 2007 April 27. doi: 10.1371/journal.pcbi.0030080
PMCID:
PMC1857818
Full Text PDF–767K
HubMed: a web-based biomedical literature search interface
Alfred D. Eaton
Nucleic Acids Res. 2006 July 1; 34(Web Server issue): W745–W747. Published online 2006 July 14. doi: 10.1093/nar/gkl037
PMCID:
PMC1538859
Abstract Full Text PDF–121K
botXminer: mining biomedical literature with a new web-based application
Uma Mudunuri, Robert Stephens, David Bruining, David Liu, Frank J. Lebeda
Nucleic Acids Res. 2006 July 1; 34(Web Server issue): W748–W752. Published online 2006 July 14. doi: 10.1093/nar/gkl194
PMCID:
PMC1538892
Abstract Full Text PDF–474K
Discovering Biological Guilds through Topological Abstraction
Gil Alterovitz, Marco F. Ramoni
AMIA Annu Symp Proc. 2006; 2006: 1–5.
PMCID:
PMC1839326
Abstract Full Text PDF–723K
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