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Database development in toxicogenomics: issues and efforts.
William B Mattes, Syril D Pettit, Susanna-Assunta Sansone, Pierre R Bushel, and Michael D Waters
Environ Health Perspect. 2004 March; 112(4): 495–505.
PMCID: PMC1241904
 Is Cited by the Following Articles in this Archive:
Proceedings of the First International Conference on Toxicogenomics Integrated with Environmental Sciences (TIES-2007)
Pierre R Bushel, Dahlia Nielsen, and Weida Tong
BMC Proc. 2009; 3(Suppl 2): S1. Published online 2009 March 10.
PMCID: PMC2654484
The UCSC Genome Browser Database: update 2009
R. M. Kuhn, D. Karolchik, A. S. Zweig, T. Wang, K. E. Smith, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, M. Pheasant, L. Meyer, F. Hsu, A. S. Hinrichs, R. A. Harte, B. Giardine, P. Fujita, M. Diekhans, T. Dreszer, H. Clawson, G. P. Barber, D. Haussler, and W. J. Kent
Nucleic Acids Res. 2009 January; 37(Database issue): D755–D761. Published online 2009 January. doi: 10.1093/nar/gkn875.
PMCID: PMC2686463
CEBS—Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data
Michael Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth Tomer, Pierre Bushel, Richard Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, and Jennifer Fostel
Nucleic Acids Res. 2008 January; 36(Database issue): D892–D900. Published online 2008 January. doi: 10.1093/nar/gkm755.
PMCID: PMC2238989
The NIEHS Environmental Health Sciences Data Resource Portal: Placing Advanced Technologies in Service to Vulnerable Communities
Keith Pezzoli, Robert Tukey, Hiram Sarabia, Ilya Zaslavsky, Marie Lynn Miranda, William A. Suk, Abel Lin, and Mark Ellisman
Environ Health Perspect. 2007 April; 115(4): 564–571. Published online 2007 January 22. doi: 10.1289/ehp.9817.
PMCID: PMC1852670
Literature Based Discovery of Gene Clusters Using Phylogenetic Methods
Indra Neil Sarkar and Abha Agrawal
AMIA Annu Symp Proc. 2006; 2006: 689–693.
PMCID: PMC1839645
Workgroup Report: Implementing a National Occupational Reproductive Research Agenda—Decade One and Beyond
Christina C. Lawson, Barbara Grajewski, George P. Daston, Linda M. Frazier, Dennis Lynch, Melissa McDiarmid, Eisuke Murono, Sally D. Perreault, Wendie A. Robbins, Megan A.K. Ryan, Michael Shelby, and Elizabeth A. Whelan
Environ Health Perspect. 2006 March; 114(3): 435–441. Published online 2005 October 26. doi: 10.1289/ehp.8458.
PMCID: PMC1392239
Meeting Report: Validation of Toxicogenomics-Based Test Systems: ECVAM–ICCVAM/NICEATM Considerations for Regulatory Use
Raffaella Corvi, Hans-Jürgen Ahr, Silvio Albertini, David H. Blakey, Libero Clerici, Sandra Coecke, George R. Douglas, Laura Gribaldo, John P. Groten, Bernd Haase, Karen Hamernik, Thomas Hartung, Tohru Inoue, Ian Indans, Daniela Maurici, George Orphanides, Diana Rembges, Susanna-Assunta Sansone, Jason R. Snape, Eisaku Toda, Weida Tong, Joost H. van Delft, Brenda Weis, and Leonard M. Schechtman
Environ Health Perspect. 2006 March; 114(3): 420–429. Published online 2005 August 17. doi: 10.1289/ehp.8247.
PMCID: PMC1392237
Recent Applications of DNA Microarray Technology to Toxicology and Ecotoxicology
Teresa Lettieri
Environ Health Perspect. 2006 January; 114(1): 4–9. Published online 2005 August 9. doi: 10.1289/ehp.8194.
PMCID: PMC1332648
A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools
Zengjun Xu, Tucker A Patterson, Jonathan D Wren, Tao Han, Leming Shi, Helen Duhart, Syed F Ali, and William Slikker, Jr
BMC Bioinformatics. 2005; 6(Suppl 2): S8. Published online 2005 July 15. doi: 10.1186/1471-2105-6-S2-S8.
PMCID: PMC1637031
ArrayExpress—a public repository for microarray gene expression data at the EBI
H. Parkinson, U. Sarkans, M. Shojatalab, N. Abeygunawardena, S. Contrino, R. Coulson, A. Farne, G. Garcia Lara, E. Holloway, M. Kapushesky, P. Lilja, G. Mukherjee, A. Oezcimen, T. Rayner, P. Rocca-Serra, A. Sharma, S. Sansone, and A. Brazma
Nucleic Acids Res. 2005 January 1; 33(Database Issue): D553–D555. Published online 2004 December 17. doi: 10.1093/nar/gki056.
PMCID: PMC540010
Standardization Initiatives in the (eco)toxicogenomics Domain: A Review
Susanna Assunta Sansone, Norman Morrison, Philippe Rocca-Serra, and Jennifer Fostel
Comp Funct Genomics. 2004 December; 5(8): 633–641. doi: 10.1002/cfg.447.
PMCID: PMC2447477
Guest Editorial: Toxicogenomics in Risk Assessment: Communicating the Challenges
Syril D. Pettit
Environ Health Perspect. 2004 August; 112(12): A662.
PMCID: PMC1277120
Current Awareness on Comparative and Functional Genomics
Comp Funct Genomics. 2004 Aug–Oct; 5(6-7): 563–570. doi: 10.1002/cfg.356.
PMCID: PMC2447433
Toxicogenomics in risk assessment: an overview of an HESI collaborative research program.
William Pennie, Syril D Pettit, and Peter G Lord
Environ Health Perspect. 2004 March; 112(4): 417–419.
PMCID: PMC1241893
Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment.
Jeffrey A Kramer, Syril D Pettit, Rupesh P Amin, Timothy A Bertram, Bruce Car, Michael Cunningham, Sandra W Curtiss, John W Davis, Clive Kind, Michael Lawton, Jorge M Naciff, Victor Oreffo, Richard J Roman, Frank D Sistare, James Stevens, Karol Thompson, Alison E Vickers, Stacey Wild, and Cynthia A Afshari
Environ Health Perspect. 2004 March; 112(4): 460–464.
PMCID: PMC1241900
Annotation and cross-indexing of array elements on multiple platforms.
William B Mattes
Environ Health Perspect. 2004 March; 112(4): 506–510.
PMCID: PMC1241905
Annotation and cross-indexing of array elements on multiple platforms.
William B Mattes
Environ Health Perspect. 2004 March; 112(4): 506–510.
PMCID: PMC1241905