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Refinement and prediction of protein prenylation motifs
Sebastian Maurer-Stroh, Frank Eisenhaber
Genome Biol. 2005; 6(6): R55. Published online 2005 May 27. doi: 10.1186/gb-2005-6-6-r55
PMCID:
PMC1175975
Abstract Full Text PDF–1.6M

Is Cited by the Following 28 Articles in this Archive:

Nuclear import of a lipid-modified transcription factor: Mobilization of NFAT5 isoform a by osmotic stress
Birgit Eisenhaber, Michaela Sammer, Wai Heng Lua, Wolfgang Benetka, Lai Ling Liew, Weimiao Yu, Hwee Kuan Lee, Manfred Koranda, Frank Eisenhaber, Sharmila Adhikari
Cell Cycle. 2011 November 15; 10(22): 3897–3911. Published online 2011 November 15. doi: 10.4161/cc.10.22.18043
PMCID:
PMC3266117
Abstract Full Text PDF–28M Supplementary Material
SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants
Greet De Baets, Joost Van Durme, Joke Reumers, Sebastian Maurer-Stroh, Peter Vanhee, Joaquin Dopazo, Joost Schymkowitz, Frederic Rousseau
Nucleic Acids Res. 2012 January; 40(D1): D935–D939. Published online 2011 November 9. doi: 10.1093/nar/gkr996
PMCID:
PMC3245173
Abstract Full Text PDF–1.9M
Structural Requirements for Interaction of Peroxisomal Targeting Signal 2 and Its Receptor PEX7
Markus Kunze, Georg Neuberger, Sebastian Maurer-Stroh, Jianmin Ma, Thomas Eck, Nancy Braverman, Johannes A. Schmid, Frank Eisenhaber, Johannes Berger
J Biol Chem. 2011 December 30; 286(52): 45048–45062. Published online 2011 November 5. doi: 10.1074/jbc.M111.301853
PMCID:
PMC3247985
Free in PMC on 2012/12/30
Identification of a Novel Class of Farnesylation Targets by Structure-Based Modeling of Binding Specificity
Nir London, Corissa L. Lamphear, James L. Hougland, Carol A. Fierke, Ora Schueler-Furman
PLoS Comput Biol. 2011 October; 7(10): e1002170. Published online 2011 October 6. doi: 10.1371/journal.pcbi.1002170
PMCID:
PMC3188499
Abstract Full Text PDF–1.5M Supplementary Material
A Single Mating-Type Locus Composed of Homeodomain Genes Promotes Nuclear Migration and Heterokaryosis in the White-Rot Fungus Phanerochaete chrysosporium
Timothy Y. James, Maria Lee, Linda T. A. van Diepen
Eukaryot Cell. 2011 February; 10(2): 249–261. doi: 10.1128/EC.00212-10
PMCID:
PMC3067404
Abstract Full Text PDF–1.2M Supplementary Material
A family of intermediate filament-like proteins is sequentially assembled into the cytoskeleton of Toxoplasma gondii
Brooke R. Anderson-White, F. Douglas Ivey, Katherine Cheng, Tomasz Szatanek, Alexander Lorestani, Con J. Beckers, David J.P. Ferguson, Nivedita Sahoo, Marc-Jan Gubbels
Cell Microbiol. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Cell Microbiol. 2011 January; 13(1): 18–31. doi: 10.1111/j.1462-5822.2010.01514.x
PMCID:
PMC3005026
Abstract Full Text PDF–3.1M Supplementary Material
Intracellular Trafficking of Guanylate-Binding Proteins Is Regulated by Heterodimerization in a Hierarchical Manner
Nathalie Britzen-Laurent, Michael Bauer, Valeria Berton, Nicole Fischer, Adrian Syguda, Simone Reipschläger, Elisabeth Naschberger, Christian Herrmann, Michael Stürzl
PLoS One. 2010; 5(12): e14246. Published online 2010 December 7. doi: 10.1371/journal.pone.0014246
PMCID:
PMC2998424
Abstract Full Text PDF–550K Supplementary Material
The Function of Two Rho Family GTPases Is Determined by Distinct Patterns of Cell Surface Localization
Hao Wu, Patrick Brennwald
Mol Cell Biol. 2010 November; 30(21): 5207–5217. Published online 2010 September 7. doi: 10.1128/MCB.00366-10
PMCID:
PMC2953063
Abstract Full Text PDF–2.7M
A Toxoplasma MORN1 Null Mutant Undergoes Repeated Divisions but Is Defective in Basal Assembly, Apicoplast Division and Cytokinesis
Alexander Lorestani, Lilach Sheiner, Kevin Yang, Seth D. Robertson, Nivedita Sahoo, Carrie F. Brooks, David J. P. Ferguson, Boris Striepen, Marc-Jan Gubbels
PLoS One. 2010; 5(8): e12302. Published online 2010 August 19. doi: 10.1371/journal.pone.0012302
PMCID:
PMC2924399
Abstract Full Text PDF–11M Supplementary Material
Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics
Christophe J Noël, Nicia Diaz, Thomas Sicheritz-Ponten, Lucie Safarikova, Jan Tachezy, Petrus Tang, Pier-Luigi Fiori, Robert P Hirt
BMC Genomics. 2010; 11: 99. Published online 2010 February 8. doi: 10.1186/1471-2164-11-99
PMCID:
PMC2843621
Abstract Full Text PDF–2.0M Supplementary Material
Identification of novel peptide substrates for protein farnesyltransferase reveals two substrate classes with distinct sequence selectivities
James L. Hougland, Katherine A. Hicks, Heather L. Hartman, Rebekah A. Kelly, Terry J. Watt, Carol A. Fierke
J Mol Biol. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: J Mol Biol. 2010 January 8; 395(1): 176–190. Published online 2009 October 28. doi: 10.1016/j.jmb.2009.10.038
PMCID:
PMC2916699
Abstract Full Text PDF–776K Supplementary Material
A novel approach to tag and identify geranylgeranylated proteins
Lai N. Chan, Courtenay Hart, Lea Guo, Tamara Nyberg, Brandon S.J. Davies, Loren G. Fong, Stephen G. Young, Brian J. Agnew, Fuyuhiko Tamanoi
Electrophoresis. Author manuscript; available in PMC 2010 April 15.
Published in final edited form as: Electrophoresis. 2009 October; 30(20): 3598–3606. doi: 10.1002/elps.200900259
PMCID:
PMC2855049
Abstract Full Text PDF–749K
ANNIE: integrated de novo protein sequence annotation
Hong Sain Ooi, Chia Yee Kwo, Michael Wildpaner, Fernanda L. Sirota, Birgit Eisenhaber, Sebastian Maurer-Stroh, Wing Cheong Wong, Alexander Schleiffer, Frank Eisenhaber, Georg Schneider
Nucleic Acids Res. 2009 July 1; 37(Web Server issue): W435–W440. Published online 2009 July 1. doi: 10.1093/nar/gkp254
PMCID:
PMC2703921
Abstract Full Text PDF–2.1M
Proteomic Analysis of Detergent-Solubilized Membrane Proteins from Insect-Developmental Forms of Trypanosoma cruzi
Esteban M. Cordero, Ernesto S. Nakayasu, Luciana G. Gentil, Nobuko Yoshida, Igor C. Almeida, José Franco da Silveira
J Proteome Res. Author manuscript; available in PMC 2009 September 28.
Published in final edited form as: J Proteome Res. 2009 July; 8(7): 3642–3652. doi: 10.1021/pr800887u
PMCID:
PMC2752740
Abstract Full Text PDF–1.0M Supplementary Material
Novel gene C17orf37 in 17q12 amplicon promotes migration and invasion of prostate cancer cells
S Dasgupta, L M Wasson, N Rauniyar, L Prokai, J Borejdo, J K Vishwanatha
Oncogene. Author manuscript; available in PMC 2010 February 13.
Published in final edited form as: Oncogene. 2009 August 13; 28(32): 2860–2872. Published online 2009 June 8. doi: 10.1038/onc.2009.145
PMCID:
PMC2726905
Abstract Full Text PDF–3.5M Supplementary Material
Context-dependent substrate recognition by protein farnesyltransferase
James L. Hougland, Corissa L. Lamphear, Sarah A. Scott, Richard A. Gibbs, Carol A. Fierke
Biochemistry. Author manuscript; available in PMC 2010 March 3.
Published in final edited form as: Biochemistry. 2009 March 3; 48(8): 1691–1701. doi: 10.1021/bi801710g
PMCID:
PMC2765569
Abstract Full Text PDF–2.8M Supplementary Material
VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation
Teresa Ceserani, Anna Trofka, Neeru Gandotra, Timothy Nelson
Plant J. Author manuscript; available in PMC 2010 March 1.
Published in final edited form as: Plant J. 2009 March; 57(6): 1000–1014. Published online 2008 November 3. doi: 10.1111/j.1365-313X.2008.03742.x
PMCID:
PMC2793540
Abstract Full Text PDF–1.6M Supplementary Material
CSS-Palm 2.0: an updated software for palmitoylation sites prediction
Jian Ren, Longping Wen, Xinjiao Gao, Changjiang Jin, Yu Xue, Xuebiao Yao
Protein Eng Des Sel. 2008 November; 21(11): 639–644. Published online 2008 August 27. doi: 10.1093/protein/gzn039
PMCID:
PMC2569006
Abstract Full Text PDF–260K
Identification of GATC- and CCGG- recognizing Type II REases and their putative specificity-determining positions using Scan2S—a novel motif scan algorithm with optional secondary structure constraints
Masha Y. Niv, Lucy Skrabanek, Richard J. Roberts, Harold A. Scheraga, Harel Weinstein
Proteins. Author manuscript; available in PMC 2008 July 15.
Published in final edited form as: Proteins. 2008 May 1; 71(2): 631–640. doi: 10.1002/prot.21777
PMCID:
PMC2465807
Abstract Full Text PDF–1.5M
Isoprenylcysteine Carboxy Methylation Is Essential for Development in Dictyostelium discoideum
Ying Chen, Kyle J. McQuade, Xiao-Juan Guan, Peter A. Thomason, Michael S. Wert, Jeffry B. Stock, Edward C. Cox
Mol Biol Cell. 2007 October; 18(10): 4106–4118. doi: 10.1091/mbc.E06-11-1006
PMCID:
PMC1995708
Abstract Full Text PDF–1.1M Supplementary Material
Evaluation of Protein Farnesyltransferase Substrate Specificity using Synthetic Peptide Libraries
Amanda J Krzysiak, Sarah A. Scott, Katherine A. Hicks, Carol A. Fierke, Richard A. Gibbs
Bioorg Med Chem Lett. Author manuscript; available in PMC 2008 October 15.
Published in final edited form as: Bioorg Med Chem Lett. 2007 October 15; 17(20): 5548–5551. Published online 2007 August 16. doi: 10.1016/j.bmcl.2007.08.024
PMCID:
PMC2077820
Abstract Full Text PDF–453K Supplementary Material
C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families
Ryan S Austin, Nicholas J Provart, Sean R Cutler
BMC Genomics. 2007; 8: 191. Published online 2007 June 26. doi: 10.1186/1471-2164-8-191
PMCID:
PMC1929074
Abstract Full Text PDF–950K Supplementary Material
Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins
Sebastian Maurer-Stroh, Manfred Koranda, Wolfgang Benetka, Georg Schneider, Fernanda L Sirota, Frank Eisenhaber
PLoS Comput Biol. 2007 April; 3(4): e66. Prepublished online 2007 February 23. Published online 2007 April 6. doi: 10.1371/journal.pcbi.0030066
PMCID:
PMC1847700
Abstract Full Text PDF–1.3M
Dual Lipid Modification of Arabidopsis Gγ-Subunits Is Required for Efficient Plasma Membrane Targeting
Qin Zeng, Xuejun Wang, Mark P. Running
Plant Physiol. 2007 March; 143(3): 1119–1131. doi: 10.1104/pp.106.093583
PMCID:
PMC1820929
Abstract Full Text PDF–2.1M Supplementary Material
pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model
Georg Neuberger, Georg Schneider, Frank Eisenhaber
Biol Direct. 2007; 2: 1. Published online 2007 January 12. doi: 10.1186/1745-6150-2-1
PMCID:
PMC1783638
Abstract Full Text PDF–1.1M
Prenylation of Saccharomyces cerevisiae Chs4p Affects Chitin Synthase III Activity and Chitin Chain Length
Kariona A. Grabińska, Paula Magnelli, Phillips W. Robbins
Eukaryot Cell. 2007 February; 6(2): 328–336. Published online 2006 December 1. doi: 10.1128/EC.00203-06
PMCID:
PMC1797950
Abstract Full Text PDF–401K
The SNARE protein family of Leishmania major
Sébastien Besteiro, Graham H Coombs, Jeremy C Mottram
BMC Genomics. 2006; 7: 250. Published online 2006 October 6. doi: 10.1186/1471-2164-7-250
PMCID:
PMC1626469
Abstract Full Text PDF–1.0M Supplementary Material
Farnesylation or geranylgeranylation? Efficient assays for testing protein prenylation in vitro and in vivo
Wolfgang Benetka, Manfred Koranda, Sebastian Maurer-Stroh, Fritz Pittner, Frank Eisenhaber
BMC Biochem. 2006; 7: 6. Published online 2006 February 28. doi: 10.1186/1471-2091-7-6
PMCID:
PMC1448197
Abstract Full Text PDF–1.5M
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