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Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
Chih-Hung Jen, Ioannis Michalopoulos, David R Westhead, Peter Meyer
Genome Biol. 2005; 6(6): R51. Published online 2005 June 1. doi: 10.1186/gb-2005-6-6-r51
PMCID:
PMC1175971
Abstract Full Text PDF–207K Supplementary Material

Is Cited by the Following 33 Articles in this Archive:

A Pair of Partially Overlapping Arabidopsis Genes with Antagonistic Circadian Expression
Andrea Kunova, Elena Zubko, Peter Meyer
Int J Plant Genomics. 2012; 2012: 349527. Published online 2012 April 3. doi: 10.1155/2012/349527
PMCID:
PMC3324146
Abstract Full Text PDF–1.3M
Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome
Amber M. Hotto, Robert J. Schmitz, Zhangjun Fei, Joseph R. Ecker, David B. Stern
G3 (Bethesda) 2011 December; 1(7): 559–570. Published online 2011 December 1. doi: 10.1534/g3.111.000752
PMCID:
PMC3276175
Abstract Full Text PDF–1.5M
Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis
Thierry Pélissier, Marion Clavel, Cristian Chaparro, Marie-Noëlle Pouch-Pélissier, Hervé Vaucheret, Jean-Marc Deragon
RNA. 2011 August; 17(8): 1502–1510. doi: 10.1261/rna.2680711
PMCID:
PMC3153974
Free in PMC on 2012/08/01
The Functions of RNA-Dependent RNA Polymerases in Arabidopsis
Matthew R. Willmann, Matthew W. Endres, Rebecca T. Cook, Brian D. Gregory
Arabidopsis Book. 2011; 9: e0146. Published online 2011 July 31. doi: 10.1199/tab.0146
PMCID:
PMC3268507
Abstract Full Text PDF–4.7M
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
Xiaohui Wu, Man Liu, Bruce Downie, Chun Liang, Guoli Ji, Qingshun Q. Li, Arthur G. Hunt
Proc Natl Acad Sci U S A. 2011 July 26; 108(30): 12533–12538. Published online 2011 July 11. doi: 10.1073/pnas.1019732108
PMCID:
PMC3145732
Abstract Full Text PDF–506K Supplementary Material
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
Mark TA Donoghue, Channa Keshavaiah, Sandesh H Swamidatta, Charles Spillane
BMC Evol Biol. 2011; 11: 47. Published online 2011 February 18. doi: 10.1186/1471-2148-11-47
PMCID:
PMC3049755
Abstract Full Text PDF–2.1M Supplementary Material
Sense and Antisense Transcripts of Convergent Gene Pairs in Arabidopsis thaliana Can Share a Common Polyadenylation Region
Elena Zubko, Andrea Kunova, Peter Meyer
PLoS One. 2011; 6(2): e16769. Published online 2011 February 2. doi: 10.1371/journal.pone.0016769
PMCID:
PMC3032780
Abstract Full Text PDF–828K
RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts
Katherine Sorber, Michelle T. Dimon, Joseph L. DeRisi
Nucleic Acids Res. 2011 May; 39(9): 3820–3835. Published online 2011 January 17. doi: 10.1093/nar/gkq1223
PMCID:
PMC3089446
Abstract Full Text PDF–363K Supplementary Material
Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis
Mily Ron, Monica Alandete Saez, Leor Eshed Williams, Jennifer C. Fletcher, Sheila McCormick
Genes Dev. 2010 May 15; 24(10): 1010–1021. doi: 10.1101/gad.1882810
PMCID:
PMC2867206
Abstract Full Text PDF–1.1M
Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons
David Secco, Arnaud Baumann, Yves Poirier
Plant Physiol. 2010 March; 152(3): 1693–1704. Published online 2010 January 15. doi: 10.1104/pp.109.149872
PMCID:
PMC2832267
Abstract Full Text PDF–597K Supplementary Material
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
Jens Georg, Björn Voß, Ingeborg Scholz, Jan Mitschke, Annegret Wilde, Wolfgang R Hess
Mol Syst Biol. 2009; 5: 305. Published online 2009 September 15. doi: 10.1038/msb.2009.63
PMCID:
PMC2758717
Abstract Full Text PDF–3.1M Supplementary Material
Characterization and expression profiles of miRNAs in rice seeds
Liang-Jiao Xue, Jing-Jing Zhang, Hong-Wei Xue
Nucleic Acids Res. 2009 February; 37(3): 916–930. Published online 2009 February. doi: 10.1093/nar/gkn998
PMCID:
PMC2647296
Abstract Full Text PDF–773K Supplementary Material
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
Xuefeng Zhou, Ramanjulu Sunkar, Hailing Jin, Jian-Kang Zhu, Weixiong Zhang
Genome Res. 2009 January; 19(1): 70–78. doi: 10.1101/gr.084806.108
PMCID:
PMC2612963
Abstract Full Text PDF–520K
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell, Keith J Edwards
BMC Genomics. 2008; 9: 475. Published online 2008 October 10. doi: 10.1186/1471-2164-9-475
PMCID:
PMC2584110
Abstract Full Text PDF–438K Supplementary Material
Transcriptome-Wide Analysis of Uncapped mRNAs in Arabidopsis Reveals Regulation of mRNA Degradation
Yuling Jiao, José Luis Riechmann, Elliot M. Meyerowitz
Plant Cell. 2008 October; 20(10): 2571–2585. doi: 10.1105/tpc.108.062786
PMCID:
PMC2590717
Abstract Full Text PDF–1.9M Supplementary Material
Sense and antisense OsDof12 transcripts in rice
Dejun Li, Chunhua Yang, Xiaobing Li, Guobiao Ji, Lihuang Zhu
BMC Mol Biol. 2008; 9: 80. Published online 2008 September 17. doi: 10.1186/1471-2199-9-80
PMCID:
PMC2576344
Abstract Full Text PDF–441K
Roles of RNA polymerase IV in gene silencing
Craig S. Pikaard, Jeremy R. Haag, Thomas Ream, Andrzej T. Wierzbicki
Trends Plant Sci. Author manuscript; available in PMC 2009 May 8.
Published in final edited form as: Trends Plant Sci. 2008 July; 13(7): 390–397. doi: 10.1016/j.tplants.2008.04.008
PMCID:
PMC2679257
Abstract Full Text PDF–1.7M
Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster
Katsutomo Okamura, Sudha Balla, Raquel Martin, Na Liu, Eric C Lai
Nat Struct Mol Biol. Author manuscript; available in PMC 2009 July 21.
Published in final edited form as: Nat Struct Mol Biol. 2008 June; 15(6): 581–590. Published online 2008 May 25. doi: 10.1038/nsmb.1438
PMCID:
PMC2713754
Abstract Full Text PDF–3.5M Supplementary Material
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu
BMC Mol Biol. 2008; 9: 6. Published online 2008 January 14. doi: 10.1186/1471-2199-9-6
PMCID:
PMC2262095
Abstract Full Text PDF–656K Supplementary Material
Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison
Eric CH Ho, Matt J Cahill, Barry J Saville
BMC Genomics. 2007; 8: 334. Published online 2007 September 24. doi: 10.1186/1471-2164-8-334
PMCID:
PMC2219887
Abstract Full Text PDF–631K Supplementary Material
Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis
Stefan R. Henz, Jason S. Cumbie, Kristin D. Kasschau, Jan U. Lohmann, James C. Carrington, Detlef Weigel, Markus Schmid
Plant Physiol. 2007 July; 144(3): 1247–1255. doi: 10.1104/pp.107.100396
PMCID:
PMC1914114
Abstract Full Text PDF–794K Supplementary Material
Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets
Sebastian Oeder, Joerg Mages, Paul Flicek, Roland Lang
BMC Genomics. 2007; 8: 200. Published online 2007 June 28. doi: 10.1186/1471-2164-8-200
PMCID:
PMC1929078
Abstract Full Text PDF–901K
Magnaporthe grisea Infection Triggers RNA Variation and Antisense Transcript Expression in Rice
Malali Gowda, R.-C. Venu, Huameng Li, Chatchawan Jantasuriyarat, Songbiao Chen, Maria Bellizzi, Vishal Pampanwar, HyeRan Kim, Ralph A. Dean, Eric Stahlberg, Rod Wing, Cari Soderlund, Guo-Liang Wang
Plant Physiol. 2007 May; 144(1): 524–533. doi: 10.1104/pp.107.095653
PMCID:
PMC1913787
Abstract Full Text PDF–726K Supplementary Material
Sense-antisense pairs in mammals: functional and evolutionary considerations
Pedro AF Galante, Daniel O Vidal, Jorge E de Souza, Anamaria A Camargo, Sandro J de Souza
Genome Biol. 2007; 8(3): R40. Published online 2007 March 19. doi: 10.1186/gb-2007-8-3-r40
PMCID:
PMC1868933
Abstract Full Text PDF–708K Supplementary Material
A pathogen-inducible endogenous siRNA in plant immunity
Surekha Katiyar-Agarwal, Rebekah Morgan, Douglas Dahlbeck, Omar Borsani, Andy Villegas, Jr., Jian-Kang Zhu, Brian J. Staskawicz, Hailing Jin
Proc Natl Acad Sci U S A. 2006 November 21; 103(47): 18002–18007. Published online 2006 October 27. doi: 10.1073/pnas.0608258103
PMCID:
PMC1693862
Abstract Full Text PDF–1.4M
Prediction of trans-antisense transcripts in Arabidopsis thaliana
Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
Genome Biol. 2006; 7(10): R92. Published online 2006 October 13. doi: 10.1186/gb-2006-7-10-r92
PMCID:
PMC1794575
Abstract Full Text PDF–504K Supplementary Material
Temporal Regulation of Shoot Development in Arabidopsis Thaliana By Mir156 and Its Target SPL3
Gang Wu, R. Scott Poethig
Development. Author manuscript; available in PMC 2007 March 1.
Published in final edited form as: Development. 2006 September; 133(18): 3539–3547. Published online 2006 August 16. doi: 10.1242/dev.02521
PMCID:
PMC1610107
Abstract Full Text PDF–1.0M
New Construct Approaches for Efficient Gene Silencing in Plants
Hua Yan, Robert Chretien, Jingsong Ye, Caius M. Rommens
Plant Physiol. 2006 August; 141(4): 1508–1518. doi: 10.1104/pp.106.082271
PMCID:
PMC1533924
Abstract Full Text PDF–481K
RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals
Mohammad Ali Faghihi, Claes Wahlestedt
Genome Biol. 2006; 7(5): R38. Published online 2006 May 9. doi: 10.1186/gb-2006-7-5-r38
PMCID:
PMC1779516
Abstract Full Text PDF–677K Supplementary Material
Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis
Rebecca Schwab, Stephan Ossowski, Markus Riester, Norman Warthmann, Detlef Weigel
Plant Cell. 2006 May; 18(5): 1121–1133. doi: 10.1105/tpc.105.039834
PMCID:
PMC1456875
Abstract Full Text PDF–376K Supplementary Material
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