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Genome-scale evidence of the nematode-arthropod clade
Hernán Dopazo, Joaquín Dopazo
Genome Biol. 2005; 6(5): R41. Published online 2005 April 28. doi: 10.1186/gb-2005-6-5-r41
PMCID:
PMC1175953
Abstract Full Text PDF–705K Supplementary Material

Is Cited by the Following 20 Articles in this Archive:

Molecular evolution of cyclin proteins in animals and fungi
Konstantin V Gunbin, Valentin V Suslov, Igor I Turnaev, Dmitry A Afonnikov, Nikolay A Kolchanov
BMC Evol Biol. 2011; 11: 224. Published online 2011 July 28. doi: 10.1186/1471-2148-11-224
PMCID:
PMC3162929
Abstract Full Text PDF–1.1M Supplementary Material
Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm
Thérèse A. Holton, Davide Pisani
Genome Biol Evol. 2010; 2: 310–324. Published online 2010 April 30. doi: 10.1093/gbe/evq016
PMCID:
PMC2997542
Abstract Full Text PDF–370K
What Was the Set of Ubiquitin and Ubiquitin-Like Conjugating Enzymes in the Eukaryote Common Ancestor?
Caroline Michelle, Patrick Vourc’h, Laurence Mignon, Christian R. Andres
J Mol Evol. 2009 June; 68(6): 616–628. Published online 2009 May 19. doi: 10.1007/s00239-009-9225-6
PMCID:
PMC2691932
Abstract Full Text PDF–456K Supplementary Material
A P2X receptor from the tardigrade species Hypsibius dujardini with fast kinetics and sensitivity to zinc and copper
Selvan Bavan, Volko A Straub, Mark L Blaxter, Steven J Ennion
BMC Evol Biol. 2009; 9: 17. Published online 2009 January 20. doi: 10.1186/1471-2148-9-17
PMCID:
PMC2633282
Abstract Full Text PDF–670K
The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees
Chih-Horng Kuo, John P. Wares, Jessica C. Kissinger
Mol Biol Evol. 2008 December; 25(12): 2689–2698. Published online 2008 September 26. doi: 10.1093/molbev/msn213
PMCID:
PMC2582981
Abstract Full Text PDF–131K Supplementary Material
Rooted triple consensus and anomalous gene trees
Gregory B Ewing, Ingo Ebersberger, Heiko A Schmidt, Arndt von Haeseler
BMC Evol Biol. 2008; 8: 118. Published online 2008 April 25. doi: 10.1186/1471-2148-8-118
PMCID:
PMC2409437
Abstract Full Text PDF–287K Supplementary Material
Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series
Igor B Rogozin, Karen Thomson, Miklós Csürös, Liran Carmel, Eugene V Koonin
Biol Direct. 2008; 3: 7. Published online 2008 March 17. doi: 10.1186/1745-6150-3-7
PMCID:
PMC2292158
Abstract Full Text PDF–890K Supplementary Material
Analysis of 142 genes resolves the rapid diversification of the rice genus
Xin-Hui Zou, Fu-Min Zhang, Jian-Guo Zhang, Li-Li Zang, Liang Tang, Jun Wang, Tao Sang, Song Ge
Genome Biol. 2008; 9(3): R49. Published online 2008 March 3. doi: 10.1186/gb-2008-9-3-r49
PMCID:
PMC2397501
Abstract Full Text PDF–466K Supplementary Material
Spliceosomal introns as tools for genomic and evolutionary analysis
Manuel Irimia, Scott William Roy
Nucleic Acids Res. 2008 March; 36(5): 1703–1712. Published online 2008 March. doi: 10.1093/nar/gkn012
PMCID:
PMC2275149
Abstract Full Text PDF–659K
Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions
Thiago M Venancio, Ricardo DeMarco, Giulliana T Almeida, Katia C Oliveira, João C Setubal, Sergio Verjovski-Almeida
BMC Genomics. 2007; 8: 407. Published online 2007 November 8. doi: 10.1186/1471-2164-8-407
PMCID:
PMC2194728
Abstract Full Text PDF–1.4M Supplementary Material
Rooting the eutherian tree: the power and pitfalls of phylogenomics
Hidenori Nishihara, Norihiro Okada, Masami Hasegawa
Genome Biol. 2007; 8(9): R199. Published online 2007 September 21. doi: 10.1186/gb-2007-8-9-r199
PMCID:
PMC2375037
Abstract Full Text PDF–338K Supplementary Material
Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences
Daniel Rico, Juan M Vaquerizas, Hernán Dopazo, Lisardo Boscá
BMC Genomics. 2007; 8: 271. Published online 2007 August 8. doi: 10.1186/1471-2164-8-271
PMCID:
PMC1973084
Abstract Full Text PDF–420K Supplementary Material
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics
Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo
Nucleic Acids Res. 2007 July; 35(Web Server issue): W38–W42. Published online 2007 July. doi: 10.1093/nar/gkm224
PMCID:
PMC1933211
Abstract Full Text PDF–1.9M
The human phylome
Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón
Genome Biol. 2007; 8(6): R109. Published online 2007 June 13. doi: 10.1186/gb-2007-8-6-r109
PMCID:
PMC2394744
Abstract Full Text PDF–491K Supplementary Material
A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution
Patrick D Danley, Sean P Mullen, Fenglong Liu, Vishvanath Nene, John Quackenbush, Kerry L Shaw
BMC Genomics. 2007; 8: 109. Published online 2007 April 25. doi: 10.1186/1471-2164-8-109
PMCID:
PMC1878485
Abstract Full Text PDF–1021K Supplementary Material
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
Béatrice Roure, Naiara Rodriguez-Ezpeleta, Hervé Philippe
BMC Evol Biol. 2007; 7(Suppl 1): S2. Published online 2007 February 8. doi: 10.1186/1471-2148-7-S1-S2
PMCID:
PMC1796611
Abstract Full Text PDF–334K
Bushes in the Tree of Life
Antonis Rokas, Sean B Carroll
PLoS Biol. 2006 November; 4(11): e352. Published online 2006 November 14. doi: 10.1371/journal.pbio.0040352
PMCID:
PMC1637082
Full Text PDF–334K
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
Joël Savard, Diethard Tautz, Stephen Richards, George M. Weinstock, Richard A. Gibbs, John H. Werren, Hervé Tettelin, Martin J. Lercher
Genome Res. 2006 November; 16(11): 1334–1338. doi: 10.1101/gr.5204306
PMCID:
PMC1626634
Abstract Full Text PDF–155K
Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes
Mark Yandell, Chris J Mungall, Chris Smith, Simon Prochnik, Joshua Kaminker, George Hartzell, Suzanna Lewis, Gerald M Rubin
PLoS Comput Biol. 2006 March; 2(3): e15. Published online 2006 March 3. doi: 10.1371/journal.pcbi.0020015
PMCID:
PMC1386723
Abstract Full Text PDF–484K Supplementary Material
Where is the difference between the genomes of humans and annelids?
Alexei Fedorov, Larisa Fedorova
Genome Biol. 2006; 7(1): 203. Published online 2006 February 1. doi: 10.1186/gb-2006-7-1-203
PMCID:
PMC1431714
Abstract Full Text PDF–57K
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