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Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays
Felix Naef, Coleen R Hacker, Nila Patil, Marcelo Magnasco
Genome Biol. 2002; 3(4): research0018.1–research0018.11. Published online 2002 March 22.
PMCID:
PMC115253
Abstract Full Text PDF–1.4M Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
Amit Zeisel, Amnon Amir, Wolfgang J Köstler, Eytan Domany
BMC Bioinformatics. 2010; 11: 400. Published online 2010 July 27. doi: 10.1186/1471-2105-11-400
PMCID:
PMC2920277
Abstract Full Text PDF–2.6M Supplementary Material
A Review of Statistical Methods for Preprocessing Oligonucleotide Microarrays
Zhijin Wu
Stat Methods Med Res. Author manuscript; available in PMC 2011 August 9.
Published in final edited form as: Stat Methods Med Res. 2009 December; 18(6): 533–541. doi: 10.1177/0962280209351924
PMCID:
PMC3152825
Abstract Full Text PDF–339K
Altered gene expression in highly purified enterocytes from patients with active coeliac disease
Suzanne Bracken, Greg Byrne, Jacinta Kelly, John Jackson, Conleth Feighery
BMC Genomics. 2008; 9: 377. Published online 2008 August 8. doi: 10.1186/1471-2164-9-377
PMCID:
PMC2533024
Abstract Full Text PDF–905K
Methods for evaluating gene expression from Affymetrix microarray datasets
Ning Jiang, Lindsey J Leach, Xiaohua Hu, Elena Potokina, Tianye Jia, Arnis Druka, Robbie Waugh, Michael J Kearsey, Zewei W Luo
BMC Bioinformatics. 2008; 9: 284. Published online 2008 June 17. doi: 10.1186/1471-2105-9-284
PMCID:
PMC2442103
Abstract Full Text PDF–540K Supplementary Material
An in vitro selection scheme for oligonucleotide probes to discriminate between closely related DNA sequences
Ivan Brukner, Razan El-Ramahi, Izabella Gorska-Flipot, Maja Krajinovic, Damian Labuda
Nucleic Acids Res. 2007 May; 35(9): e66. Published online 2007 April 10. doi: 10.1093/nar/gkm156
PMCID:
PMC1888810
Abstract Full Text PDF–1022K
A proposed metric for assessing the measurement quality of individual microarrays
Kyoungmi Kim, Grier P Page, T Mark Beasley, Stephen Barnes, Katherine E Scheirer, David B Allison
BMC Bioinformatics. 2006; 7: 35. Published online 2006 January 23. doi: 10.1186/1471-2105-7-35
PMCID:
PMC1373606
Abstract Full Text PDF–785K
Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
Richard Shippy, Timothy J Sendera, Randall Lockner, Chockalingam Palaniappan, Tamma Kaysser-Kranich, George Watts, John Alsobrook
BMC Genomics. 2004; 5: 61. Published online 2004 September 2. doi: 10.1186/1471-2164-5-61
PMCID:
PMC517929
Abstract Full Text PDF–2.7M Supplementary Material
Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
Chao Lu
BMC Bioinformatics. 2004; 5: 103. Published online 2004 July 29. doi: 10.1186/1471-2105-5-103
PMCID:
PMC509236
Abstract Full Text PDF–363K
Genetic and functional differences between multipotent neural and pluripotent embryonic stem cells
Kevin A. D'Amour, Fred H. Gage
Proc Natl Acad Sci U S A. 2003 September 30; 100(Suppl 1): 11866–11872. doi: 10.1073/pnas.1834200100
PMCID:
PMC304100
Abstract Full Text PDF–542K Supplementary Material
Modeling of DNA microarray data by using physical properties of hybridization
G. A. Held, G. Grinstein, Y. Tu
Proc Natl Acad Sci U S A. 2003 June 24; 100(13): 7575–7580. Published online 2003 June 13. doi: 10.1073/pnas.0832500100
PMCID:
PMC164628
Abstract Full Text PDF–362K Supplementary Material
Summaries of Affymetrix GeneChip probe level data
Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed
Nucleic Acids Res. 2003 February 15; 31(4): e15.
PMCID:
PMC150247
Abstract Full Text PDF–309K
Computational method for reducing variance with Affymetrix microarrays
Stephen Welle, Andrew I Brooks, Charles A Thornton
BMC Bioinformatics. 2002; 3: 23. Published online 2002 August 30. doi: 10.1186/1471-2105-3-23
PMCID:
PMC126253
Abstract Full Text PDF–2.2M Supplementary Material
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