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How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach
Wei Pan, Jizhen Lin, Chap T Le
Genome Biol. 2002; 3(5): research0022.1–research0022.10. Published online 2002 April 22.
PMCID:
PMC115224
Abstract Full Text PDF–347K
 Is Cited by the Following 14 Articles in this Archive:
Functional Cohesion of Gene Sets Determined by Latent Semantic Indexing of PubMed Abstracts
Lijing Xu, Nicholas Furlotte, Yunyue Lin, Kevin Heinrich, Michael W. Berry, Ebenezer O. George, Ramin Homayouni
PLoS One. 2011; 6(4): e18851. Published online 2011 April 14. doi: 10.1371/journal.pone.0018851
PMCID:
PMC3077411
Abstract Full Text PDF–357K Supplementary Material
CGHpower: exploring sample size calculations for chromosomal copy number experiments
Ilari Scheinin, José A Ferreira, Sakari Knuutila, Gerrit A Meijer, Mark A van de Wiel, Bauke Ylstra
BMC Bioinformatics. 2010; 11: 331. Published online 2010 June 17. doi: 10.1186/1471-2105-11-331
PMCID:
PMC2911457
Abstract Full Text PDF–541K
Gene expression profiling of mouse embryos with microarrays
Alexei A. Sharov, Yulan Piao, Minoru S. H. Ko
Methods Enzymol. Author manuscript; available in PMC 2011 September 4.
Published in final edited form as: Methods Enzymol. 2010; 477: 511–541. doi: 10.1016/S0076-6879(10)77025-7
PMCID:
PMC3166619
Abstract Full Text PDF–3.3M
Microarray study reveals that HIV-1 induces rapid type-I interferon-dependent p53 mRNA up-regulation in human primary CD4+ T cells
Michaël Imbeault, Michel Ouellet, Michel J Tremblay
Retrovirology. 2009; 6: 5. Published online 2009 January 15. doi: 10.1186/1742-4690-6-5
PMCID:
PMC2637825
Abstract Full Text PDF–1.4M Supplementary Material
Ranking Analysis of Microarray Data: A Powerful Method for Identifying Differentially Expressed Genes
Yuan-De Tan, Myriam Fornage, Yun-Xin Fu
Genomics. Author manuscript; available in PMC 2008 November 18.
Published in final edited form as: Genomics. 2006 December; 88(6): 846–854. Published online 2006 September 18. doi: 10.1016/j.ygeno.2006.08.003
PMCID:
PMC2584353
Abstract Full Text PDF–848K Supplementary Material
Analysis of microarray experiments of gene expression profiling
Adi L. Tarca, Roberto Romero, Sorin Draghici
Am J Obstet Gynecol. Author manuscript; available in PMC 2008 June 22.
Published in final edited form as: Am J Obstet Gynecol. 2006 August; 195(2): 373–388. doi: 10.1016/j.ajog.2006.07.001
PMCID:
PMC2435252
Abstract Full Text PDF–1.9M
The PowerAtlas: a power and sample size atlas for microarray experimental design and research
Grier P Page, Jode W Edwards, Gary L Gadbury, Prashanth Yelisetti, Jelai Wang, Prinal Trivedi, David B Allison
BMC Bioinformatics. 2006; 7: 84. Published online 2006 February 22. doi: 10.1186/1471-2105-7-84
PMCID:
PMC1395338
Abstract Full Text PDF–1.0M
Sample size for detecting differentially expressed genes in microarray experiments
Caimiao Wei, Jiangning Li, Roger E Bumgarner
BMC Genomics. 2004; 5: 87. Published online 2004 November 8. doi: 10.1186/1471-2164-5-87
PMCID:
PMC533874
Abstract Full Text PDF–302K Supplementary Material
Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays
Jeffrey P Townsend
BMC Bioinformatics. 2004; 5: 54. Published online 2004 May 5. doi: 10.1186/1471-2105-5-54
PMCID:
PMC420235
Abstract Full Text PDF–471K
Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays
Leah Barrera, Chris Benner, Yong-Chuan Tao, Elizabeth Winzeler, Yingyao Zhou
BMC Bioinformatics. 2004; 5: 42. Published online 2004 April 20. doi: 10.1186/1471-2105-5-42
PMCID:
PMC411067
Abstract Full Text PDF–1.7M
Exploratory differential gene expression analysis in microarray experiments with no or limited replication
Alexander V Loguinov, I Saira Mian, Chris D Vulpe
Genome Biol. 2004; 5(3): R18. Published online 2004 March 1. doi: 10.1186/gb-2004-5-3-r18
PMCID:
PMC395768
Abstract Full Text PDF–15M Supplementary Material
Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation
Jason Comander, Sripriya Natarajan, Michael A Gimbrone, Jr, Guillermo García-Cardeña
BMC Genomics. 2004; 5: 17. Published online 2004 February 27. doi: 10.1186/1471-2164-5-17
PMCID:
PMC400250
Abstract Full Text PDF–899K
Statistical implications of pooling RNA samples for microarray experiments
Xuejun Peng, Constance L Wood, Eric M Blalock, Kuey Chu Chen, Philip W Landfield, Arnold J Stromberg
BMC Bioinformatics. 2003; 4: 26. Published online 2003 June 24. doi: 10.1186/1471-2105-4-26
PMCID:
PMC166151
Abstract Full Text PDF–2.6M
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