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Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression
Pavel V Baranov, Andrew W Hammer, Jiadong Zhou, Raymond F Gesteland, John F Atkins
Genome Biol. 2005; 6(3): R25. Published online 2005 February 15. doi: 10.1186/gb-2005-6-3-r25
PMCID:
PMC1088944
Abstract Full Text PDF–231K Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment
Virag Sharma, Andrew E. Firth, Ivan Antonov, Olivier Fayet, John F. Atkins, Mark Borodovsky, Pavel V. Baranov
Mol Biol Evol. 2011 November; 28(11): 3195–3211. Published online 2011 June 14. doi: 10.1093/molbev/msr155
PMCID:
PMC3199440
Free in PMC on 2012/11/01
Regulation of gene expression by reiterative transcription
Charles L. Turnbough, Jr.
Curr Opin Microbiol. Author manuscript; available in PMC 2012 April 1.
Published in final edited form as: Curr Opin Microbiol. 2011 April; 14(2): 142–147. Published online 2011 February 19. doi: 10.1016/j.mib.2011.01.012
PMCID:
PMC3078970
Abstract Full Text PDF–603K
Avoidance of Long Mononucleotide Repeats in Codon Pair Usage
Tingting Gu, Shengjun Tan, Xiaoxi Gou, Hitoshi Araki, Dacheng Tian
Genetics. 2010 November; 186(3): 1077–1084. doi: 10.1534/genetics.110.121137
PMCID:
PMC2975279
Abstract Full Text PDF–2.7M
Simple Sequence Repeats and Genome Plasticity in Streptococcus agalactiae
Robert Janulczyk, Vega Masignani, Domenico Maione, Hervé Tettelin, Guido Grandi, John L. Telford
J Bacteriol. 2010 August; 192(15): 3990–4000. Published online 2010 May 21. doi: 10.1128/JB.01465-09
PMCID:
PMC2916363
Abstract Full Text PDF–512K Supplementary Material
Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities
Yassina Bechah, Khalid El Karkouri, Oleg Mediannikov, Quentin Leroy, Nicolas Pelletier, Catherine Robert, Claudine Médigue, Jean-Louis Mege, Didier Raoult
Genome Res. 2010 May; 20(5): 655–663. doi: 10.1101/gr.103564.109
PMCID:
PMC2860167
Abstract Full Text PDF–910K
Recode-2: new design, new search tools, and many more genes
Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov
Nucleic Acids Res. 2010 January; 38(Database issue): D69–D74. Published online 2010 January. doi: 10.1093/nar/gkp788
PMCID:
PMC2808893
Abstract Full Text PDF–1.4M
Slip into Something More Functional: Selection Maintains Ancient Frameshifts in Homopolymeric Sequences
Jennifer J. Wernegreen, Seth N. Kauppinen, Patrick H. Degnan
Mol Biol Evol. 2010 April; 27(4): 833–839. Published online 2009 December 2. doi: 10.1093/molbev/msp290
PMCID:
PMC2877537
Abstract Full Text PDF–282K Supplementary Material
Preferred and avoided codon pairs in three domains of life
Age Tats, Tanel Tenson, Maido Remm
BMC Genomics. 2008; 9: 463. Published online 2008 October 8. doi: 10.1186/1471-2164-9-463
PMCID:
PMC2585594
Abstract Full Text PDF–626K Supplementary Material
Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts
Ivica Tamas, Jennifer J. Wernegreen, Björn Nystedt, Seth N. Kauppinen, Alistair C. Darby, Laura Gomez-Valero, Daniel Lundin, Anthony M. Poole, Siv G. E. Andersson
Proc Natl Acad Sci U S A. 2008 September 30; 105(39): 14934–14939. Published online 2008 September 24. doi: 10.1073/pnas.0806554105
PMCID:
PMC2567471
Abstract Full Text PDF–545K Supplementary Material
Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors
Charles L. Turnbough, Jr., Robert L. Switzer
Microbiol Mol Biol Rev. 2008 June; 72(2): 266–300. doi: 10.1128/MMBR.00001-08
PMCID:
PMC2415746
Abstract Full Text PDF–1.0M
CapA, an Autotransporter Protein of Campylobacter jejuni, Mediates Association with Human Epithelial Cells and Colonization of the Chicken Gut
Sami S. A. Ashgar, Neil J. Oldfield, Karl G. Wooldridge, Michael A. Jones, Greg J. Irving, David P. J. Turner, Dlawer A. A. Ala'Aldeen
J Bacteriol. 2007 March; 189(5): 1856–1865. Published online 2006 December 15. doi: 10.1128/JB.01427-06
PMCID:
PMC1855769
Abstract Full Text PDF–288K
Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and −1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants
Xiaoxing Wang, Sek-Man Wong, D. X. Liu
Nucleic Acids Res. 2006; 34(4): 1250–1260. Published online 2006 February 25. doi: 10.1093/nar/gkl017
PMCID:
PMC1383626
Abstract Full Text PDF–549K
DNA Sequences Shaped by Selection for Stability
Martin Ackermann, Lin Chao
PLoS Genet. 2006 February; 2(2): e22. Published online 2006 February 24. doi: 10.1371/journal.pgen.0020022
PMCID:
PMC1378130
Abstract Full Text PDF–194K Supplementary Material
Vibrio cholerae ToxT Independently Activates the Divergently Transcribed aldA and tagA Genes
Jeffrey H. Withey, Victor J. DiRita
J Bacteriol. 2005 December; 187(23): 7890–7900. doi: 10.1128/JB.187.23.7890-7900.2005
PMCID:
PMC1291258
Abstract Full Text PDF–366K
A gonococcal homologue of meningococcal γ-glutamyl transpeptidase gene is a new type of bacterial pseudogene that is transcriptionally active but phenotypically silent
Hideyuki Takahashi, Haruo Watanabe
BMC Microbiol. 2005; 5: 56. Published online 2005 October 4. doi: 10.1186/1471-2180-5-56
PMCID:
PMC1262726
Abstract Full Text PDF–1.6M Supplementary Material
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects
Patrick H. Degnan, Adam B. Lazarus, Jennifer J. Wernegreen
Genome Res. 2005 August; 15(8): 1023–1033. doi: 10.1101/gr.3771305
PMCID:
PMC1182215
Abstract Full Text PDF–891K
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