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A DNA microarray survey of gene expression in normal human tissues
Radha Shyamsundar, Young H Kim, John P Higgins, Kelli Montgomery, Michelle Jorden, Anand Sethuraman, Matt van de Rijn, David Botstein, Patrick O Brown, Jonathan R Pollack
Genome Biol. 2005; 6(3): R22. Published online 2005 February 14. doi: 10.1186/gb-2005-6-3-r22
Correction in:
Genome Biol. 2005; 6(9): 404.
PMCID:
PMC1088941
Abstract Full Text PDF–1.7M Supplementary Material Correction
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 Is Cited by the Following 58 Articles in this Archive:
Development of a Pacific oyster (Crassostrea gigas) 31,918-feature microarray: identification of reference genes and tissue-enriched expression patterns
Nolwenn M Dheilly, Christophe Lelong, Arnaud Huvet, Pascal Favrel
BMC Genomics. 2011; 12: 468. Published online 2011 September 27. doi: 10.1186/1471-2164-12-468
PMCID:
PMC3191543
Abstract Full Text PDF–3.1M Supplementary Material
Cancer/Testis antigens as potential predictors of biochemical recurrence of prostate cancer following radical prostatectomy
Takumi Shiraishi, Naoki Terada, Yu Zeng, Takahito Suyama, Jun Luo, Bruce Trock, Prakash Kulkarni, Robert H Getzenberg
J Transl Med. 2011; 9: 153. Published online 2011 September 14. doi: 10.1186/1479-5876-9-153
PMCID:
PMC3184272
Abstract Full Text PDF–387K Supplementary Material
Tissue-specific gene expression templates for accurate molecular characterization of the normal physiological states of multiple human tissues with implication in development and cancer studies
Pei-Ing Hwang, Huan-Bin Wu, Chin-Di Wang, Bai-Ling Lin, Cheng-Tao Chen, Shinsheng Yuan, Guani Wu, Ker-Chau Li
BMC Genomics. 2011; 12: 439. Published online 2011 September 1. doi: 10.1186/1471-2164-12-439
PMCID:
PMC3178546
Abstract Full Text PDF–1.8M Supplementary Material
Systematic Spatial Bias in DNA Microarray Hybridization Is Caused by Probe Spot Position-Dependent Variability in Lateral Diffusion
Doris Steger, David Berry, Susanne Haider, Matthias Horn, Michael Wagner, Roman Stocker, Alexander Loy
PLoS One. 2011; 6(8): e23727. Published online 2011 August 17. doi: 10.1371/journal.pone.0023727
PMCID:
PMC3157431
Abstract Full Text PDF–792K
Expression cartography of human tissues using self organizing maps
Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
BMC Bioinformatics. 2011; 12: 306. Published online 2011 July 27. doi: 10.1186/1471-2105-12-306
PMCID:
PMC3161046
Abstract Full Text PDF–7.9M Supplementary Material
A Compendium of Canine Normal Tissue Gene Expression
Joseph Briggs, Melissa Paoloni, Qing-Rong Chen, Xinyu Wen, Javed Khan, Chand Khanna
PLoS One. 2011; 6(5): e17107. Published online 2011 May 31. doi: 10.1371/journal.pone.0017107
PMCID:
PMC3104984
Abstract Full Text PDF–3.3M Supplementary Material
Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks
Recep Colak, Flavia Moser, Jeffrey Shih-Chieh Chu, Alexander Schönhuth, Nansheng Chen, Martin Ester
PLoS One. 2010; 5(10): e13348. Published online 2010 October 25. doi: 10.1371/journal.pone.0013348
Correction in:
PLoS One. 2010; 5(12): 10.1371/annotation/ab9e87d9-f59c-4dab-aea5-a3c1116d3d85.
PMCID:
PMC2963598
Abstract Full Text PDF–1.1M Supplementary Material Correction
A panel of cancer-testis genes exhibiting broad-spectrum expression in haematological malignancies
Amanda P. Liggins, Seah H. Lim, Elizabeth J. Soilleux, Karen Pulford, Alison H. Banham
Cancer Immun. 2010; 10: 8. Published online 2010 August 23.
PMCID:
PMC2964014
Abstract Full Text PDF–1.9M Supplementary Material
Could protein tertiary structure influence mammary transgene expression more than tissue specific codon usage?
Zuyong He, Yiqiang Zhao, Gui Mei, Ning Li, Yaosheng Chen
Transgenic Res. 2010 August; 19(4): 519–533. Published online 2010 June 19. doi: 10.1007/s11248-010-9411-8
PMCID:
PMC2902731
Abstract Full Text PDF–592K Supplementary Material
Deletions of Xp Provide Evidence for the Role of Holocytochrome C-Type Synthase (HCCS) in Congenital Diaphragmatic Hernia
Kanwal Qidwai, David M. Pearson, Gayle Simpson Patel, Barbara R. Pober, LaDonna L. Immken, Sau Wai Cheung, Daryl A. Scott
Am J Med Genet A. Author manuscript; available in PMC 2011 June 1.
Published in final edited form as: Am J Med Genet A. 2010 June; 152A(6): 1588–1590. doi: 10.1002/ajmg.a.33410
PMCID:
PMC2909827
Full Text PDF–31K Supplementary Material
Comparison and consolidation of microarray data sets of human tissue expression
Jenny Russ, Matthias E Futschik
BMC Genomics. 2010; 11: 305. Published online 2010 May 14. doi: 10.1186/1471-2164-11-305
PMCID:
PMC2885367
Abstract Full Text PDF–1.8M Supplementary Material
Gene Expression Profiles Identify Inflammatory Signatures in Dendritic Cells
Anna Torri, Ottavio Beretta, Anna Ranghetti, Francesca Granucci, Paola Ricciardi-Castagnoli, Maria Foti
PLoS One. 2010; 5(2): e9404. Published online 2010 February 24. doi: 10.1371/journal.pone.0009404
Correction in:
PLoS One. 2010; 5(6): 10.1371/annotation/53736770-ad30-4c6b-8279-d344a1232cc6.
PMCID:
PMC2827557
Abstract Full Text PDF–2.1M Supplementary Material Correction
Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins
Claire C Morgan, Noeleen B Loughran, Thomas A Walsh, Alan J Harrison, Mary J O'Connell
BMC Evol Biol. 2010; 10: 39. Published online 2010 February 11. doi: 10.1186/1471-2148-10-39
PMCID:
PMC2830953
Abstract Full Text PDF–960K Supplementary Material
Comparison of Breast Cancer to Healthy Control Tissue Discovers Novel Markers with Potential for Prognosis and Early Detection
Michèl Schummer, Ann Green, J. David Beatty, Beth Y. Karlan, Scott Karlan, Jenny Gross, Sean Thornton, Martin McIntosh, Nicole Urban
PLoS One. 2010; 5(2): e9122. Published online 2010 February 9. doi: 10.1371/journal.pone.0009122
Correction in:
PLoS One. 2010; 5(4): 10.1371/annotation/632c5ae8-271b-4d19-8509-dc3b2eefe6a4.
PMCID:
PMC2817747
Abstract Full Text PDF–324K Supplementary Material Correction
Splicing factor and exon profiling across human tissues
Pierre de la Grange, Lise Gratadou, Marc Delord, Martin Dutertre, Didier Auboeuf
Nucleic Acids Res. 2010 May; 38(9): 2825–2838. Published online 2010 January 27. doi: 10.1093/nar/gkq008
PMCID:
PMC2875023
Abstract Full Text PDF–18M Supplementary Material
Disease Gene Characterization through Large-Scale Co-Expression Analysis
Allen Day, Jun Dong, Vincent A. Funari, Bret Harry, Samuel P. Strom, Dan H. Cohn, Stanley F. Nelson
PLoS One. 2009; 4(12): e8491. Published online 2009 December 31. doi: 10.1371/journal.pone.0008491
PMCID:
PMC2797297
Abstract Full Text PDF–419K Supplementary Material
Novel Rank-Based Statistical Methods Reveal MicroRNAs with Differential Expression in Multiple Cancer Types
Roy Navon, Hui Wang, Israel Steinfeld, Anya Tsalenko, Amir Ben-Dor, Zohar Yakhini
PLoS One. 2009; 4(11): e8003. Published online 2009 November 25. doi: 10.1371/journal.pone.0008003
PMCID:
PMC2777376
Abstract Full Text PDF–600K Supplementary Material
Collagen and calcium-binding EGF domains 1 is frequently inactivated in ovarian cancer by aberrant promoter hypermethylation and modulates cell migration and survival
C A Barton, B S Gloss, W Qu, A L Statham, N F Hacker, R L Sutherland, S J Clark, P M O'Brien
Br J Cancer. 2010 January 5; 102(1): 87–96. Published online 2009 November 24. doi: 10.1038/sj.bjc.6605429
PMCID:
PMC2813742
Abstract Full Text PDF–668K Supplementary Material
CRX Is a Diagnostic Marker of Retinal and Pineal Lineage Tumors
Sandro Santagata, Cecile L. Maire, Ahmed Idbaih, Lars Geffers, Mick Correll, Kristina Holton, John Quackenbush, Keith L. Ligon
PLoS One. 2009; 4(11): e7932. Published online 2009 November 20. doi: 10.1371/journal.pone.0007932
PMCID:
PMC2775954
Abstract Full Text PDF–989K Supplementary Material
Expression profiling of repetitive elements by melting temperature analysis: variation in HERV-W gag expression across human individuals and tissues
Christoffer Nellåker, Fang Li, Fredrik Uhrzander, Joanna Tyrcha, Håkan Karlsson
BMC Genomics. 2009; 10: 532. Published online 2009 November 17. doi: 10.1186/1471-2164-10-532
PMCID:
PMC2779825
Abstract Full Text PDF–409K
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
Paulo P. Amaral, Christine Neyt, Simon J. Wilkins, Marjan E. Askarian-Amiri, Susan M. Sunkin, Andrew C. Perkins, John S. Mattick
RNA. 2009 November; 15(11): 2013–2027. doi: 10.1261/rna.1705309
PMCID:
PMC2764477
Abstract Full Text PDF–1.0M
Postmortem Brain Tissue for Drug Discovery in Psychiatric Research
Sanghyeon Kim, Maree J. Webster
Schizophr Bull. 2009 November; 35(6): 1031–1033. Published online 2009 September 25. doi: 10.1093/schbul/sbp106
PMCID:
PMC2762630
Full Text PDF–45K
Disease signatures are robust across tissues and experiments
Joel T Dudley, Robert Tibshirani, Tarangini Deshpande, Atul J Butte
Mol Syst Biol. 2009; 5: 307. Published online 2009 September 15. doi: 10.1038/msb.2009.66
PMCID:
PMC2758720
Abstract Full Text PDF–1.2M Supplementary Material
The B7 family member B7-H6 is a tumor cell ligand for the activating natural killer cell receptor NKp30 in humans
Cameron S. Brandt, Myriam Baratin, Eugene C. Yi, Jacob Kennedy, Zeren Gao, Brian Fox, Betty Haldeman, Craig D. Ostrander, Tomonori Kaifu, Christian Chabannon, Alessandro Moretta, Robert West, WenFeng Xu, Eric Vivier, Steven D. Levin
J Exp Med. 2009 July 6; 206(7): 1495–1503. doi: 10.1084/jem.20090681
PMCID:
PMC2715080
Abstract Full Text PDF–4.0M Supplementary Material
Genetic Control of Human Brain Transcript Expression in Alzheimer Disease
Jennifer A. Webster, J. Raphael Gibbs, Jennifer Clarke, Monika Ray, Weixiong Zhang, Peter Holmans, Kristen Rohrer, Alice Zhao, Lauren Marlowe, Mona Kaleem, Donald S. McCorquodale, III, Cindy Cuello, Doris Leung, Leslie Bryden, Priti Nath, Victoria L. Zismann, Keta Joshipura, Matthew J. Huentelman, Diane Hu-Lince, Keith D. Coon, David W. Craig, John V. Pearson, NACC-Neuropathology Group, Christopher B. Heward, Eric M. Reiman, Dietrich Stephan, John Hardy, Amanda J. Myers
Am J Hum Genet. 2009 April 10; 84(4): 445–458. doi: 10.1016/j.ajhg.2009.03.011
PMCID:
PMC2667989
Abstract Full Text PDF–729K Supplementary Material
Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis
Miguel Pérez-Enciso, André LJ Ferraz, Ana Ojeda, Manel López-Béjar
BMC Genomics. 2009; 10: 89. Published online 2009 February 24. doi: 10.1186/1471-2164-10-89
PMCID:
PMC2656523
Abstract Full Text PDF–517K Supplementary Material
Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification
Michael Gormley, Aydin Tozeren
BMC Bioinformatics. 2008; 9: 486. Published online 2008 November 17. doi: 10.1186/1471-2105-9-486
PMCID:
PMC2620272
Abstract Full Text PDF–2.7M Supplementary Material
Mapping Key Features of Transcriptional Regulatory Circuitry in Embryonic Stem Cells
M.F. Cole, R.A. Young
Cold Spring Harb Symp Quant Biol. Author manuscript; available in PMC 2010 December 21.
Published in final edited form as: Cold Spring Harb Symp Quant Biol. 2008; 73: 183–193. Published online 2008 November 6. doi: 10.1101/sqb.2008.73.027
PMCID:
PMC3006436
Abstract Full Text PDF–1.1M
Fast approximate hierarchical clustering using similarity heuristics
Meelis Kull, Jaak Vilo
BioData Min. 2008; 1: 9. Published online 2008 September 22. doi: 10.1186/1756-0381-1-9
PMCID:
PMC2561018
Abstract Full Text PDF–3.1M Supplementary Material
The Proteogenomic Path towards Biomarker Discovery
Tara K Sigdel, Minnie M. Sarwal
Pediatr Transplant. Author manuscript; available in PMC 2009 November 1.
Published in final edited form as: Pediatr Transplant. 2008 November; 12(7): 737–747. Published online 2008 August 22. doi: 10.1111/j.1399-3046.2008.01018.x
PMCID:
PMC2574627
Abstract Full Text PDF–904K
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