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Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
Dave MacLeod, Robert L Charlebois, Ford Doolittle, Eric Bapteste
BMC Evol Biol. 2005; 5: 27. Published online 2005 April 8. doi: 10.1186/1471-2148-5-27
PMCID:
PMC1087482
Abstract Full Text PDF–710K

Is Cited by the Following 14 Articles in this Archive:

Towards an accurate identification of mosaic genes and partial horizontal gene transfers
Alix Boc, Vladimir Makarenkov
Nucleic Acids Res. 2011 November; 39(21): e144. Published online 2011 September 14. doi: 10.1093/nar/gkr735
PMCID:
PMC3241670
Abstract Full Text PDF–5.6M Supplementary Material
Evaluating Phylogenetic Congruence in the Post-Genomic Era
Jessica W. Leigh, François-Joseph Lapointe, Philippe Lopez, Eric Bapteste
Genome Biol Evol. 2011; 3: 571–587. Published online 2011 June 28. doi: 10.1093/gbe/evr050
PMCID:
PMC3156567
Abstract Full Text PDF–1000K
A new, fast algorithm for detecting protein coevolution using maximum compatible cliques
Alex Rodionov, Alexandr Bezginov, Jonathan Rose, Elisabeth RM Tillier
Algorithms Mol Biol. 2011; 6: 17. Published online 2011 June 14. doi: 10.1186/1748-7188-6-17
PMCID:
PMC3130660
Abstract Full Text PDF–672K Supplementary Material
SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees
Tobias Hill, Karl JV Nordström, Mikael Thollesson, Tommy M Säfström, Andreas KE Vernersson, Robert Fredriksson, Helgi B Schiöth
BMC Evol Biol. 2010; 10: 42. Published online 2010 February 13. doi: 10.1186/1471-2148-10-42
PMCID:
PMC2829038
Abstract Full Text PDF–749K Supplementary Material
Comparison of phylogenetic trees through alignment of embedded evolutionary distances
Kwangbom Choi, Shawn M Gomez
BMC Bioinformatics. 2009; 10: 423. Published online 2009 December 15. doi: 10.1186/1471-2105-10-423
PMCID:
PMC3087345
Abstract Full Text PDF–2.2M Supplementary Material
Prokaryotic evolution and the tree of life are two different things
Eric Bapteste, Maureen A O'Malley, Robert G Beiko, Marc Ereshefsky, J Peter Gogarten, Laura Franklin-Hall, François-Joseph Lapointe, John Dupré, Tal Dagan, Yan Boucher, William Martin
Biol Direct. 2009; 4: 34. Published online 2009 September 29. doi: 10.1186/1745-6150-4-34
PMCID:
PMC2761302
Abstract Full Text PDF–403K
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning
Philippe Lemey, Martin Lott, Darren P Martin, Vincent Moulton
BMC Bioinformatics. 2009; 10: 126. Published online 2009 April 27. doi: 10.1186/1471-2105-10-126
PMCID:
PMC2684544
Abstract Full Text PDF–957K Supplementary Material
Bioinformatic detection of horizontally transferred DNA in bacterial genomes
Morgan GI Langille, Fiona SL Brinkman
F1000 Biol Rep. 2009; 1: 25. Published online 2009 March 24. doi: 10.3410/B1-25
PMCID:
PMC2920674
Abstract Full Text PDF–103K
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Cuong Than, Derek Ruths, Luay Nakhleh
BMC Bioinformatics. 2008; 9: 322. Published online 2008 July 28. doi: 10.1186/1471-2105-9-322
PMCID:
PMC2533029
Abstract Full Text PDF–1.2M
Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees
Leonardo de Oliveira Martins, Élcio Leal, Hirohisa Kishino
PLoS ONE. 2008; 3(7): e2651. Published online 2008 July 9. doi: 10.1371/journal.pone.0002651
PMCID:
PMC2440540
Abstract Full Text PDF–892K Supplementary Material
Estimating the extent of horizontal gene transfer in metagenomic sequences
Javier Tamames, Andrés Moya
BMC Genomics. 2008; 9: 136. Published online 2008 March 24. doi: 10.1186/1471-2164-9-136
PMCID:
PMC2324111
Abstract Full Text PDF–664K Supplementary Material
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
Sheila Podell, Terry Gaasterland
Genome Biol. 2007; 8(2): R16. Published online 2007 February 2. doi: 10.1186/gb-2007-8-2-r16
PMCID:
PMC1852411
Abstract Full Text PDF–403K Supplementary Material
Pattern pluralism and the Tree of Life hypothesis
W. Ford Doolittle, Eric Bapteste
Proc Natl Acad Sci U S A. 2007 February 13; 104(7): 2043–2049. Published online 2007 January 29. doi: 10.1073/pnas.0610699104
PMCID:
PMC1892968
Abstract Full Text PDF–348K
Phylogenetic identification of lateral genetic transfer events
Robert G Beiko, Nicholas Hamilton
BMC Evol Biol. 2006; 6: 15. Published online 2006 February 11. doi: 10.1186/1471-2148-6-15
PMCID:
PMC1431587
Abstract Full Text PDF–396K
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