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Select item 60594231.

Structure and consistency of self-reported social contact networks in British secondary schools

Adam J. Kucharski, Clare Wenham, Polly Brownlee, Lucie Racon, Natasha Widmer, Ken T. D. Eames, Andrew J. K. Conlan

PLoS One. 2018; 13(7): e0200090. Published online 2018 Jul 25. doi: 10.1371/journal.pone.0200090

PMCID:: PMC6059423

Article PDF–5.1M

Select item 54117682.

Fast and accurate de novo genome assembly from long uncorrected reads

Robert Vaser, Ivan Sović, Niranjan Nagarajan, Mile Šikić

Genome Res. 2017 May; 27(5): 737–746. doi: 10.1101/gr.214270.116

PMCID:: PMC5411768

Article PDF–1.2M

Select item 67815873.

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

Damla Senol Cali, Jeremie S Kim, Saugata Ghose, Can Alkan, Onur Mutlu

Brief Bioinform. 2019 Jul; 20(4): 1542–1559. Published online 2018 Apr 2. doi: 10.1093/bib/bby017

PMCID:: PMC6781587

Article PDF–5.4M

Select item 77306294.

Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing

Zhao Chen, David L. Erickson, Jianghong Meng

Int J Mol Sci. 2020 Dec; 21(23): 9161. Published online 2020 Dec 1. doi: 10.3390/ijms21239161

PMCID:: PMC7730629

Article PDF–3.0M

Select item 92108305.

Designing a rabies control mobile application for a community-based rabies surveillance system during the COVID-19 pandemic in Bali, Indonesia

I Made Subrata, Ngakan Putu Anom Harjana, Kadek Karang Agustina, Sang Gede Purnama, Made Pasek Kardiwinata

Vet World. 2022 May; 15(5): 1237–1245. Published online 2022 May 21. doi: 10.14202/vetworld.2022.1237-1245

PMCID:: PMC9210830

Article PDF–1.4M

Select item 103918966.

The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing

Hussain A. Safar, Fatemah Alatar, Kother Nasser, Rehab Al-Ajmi, Wadha Alfouzan, Abu Salim Mustafa

BMC Biotechnol. 2023; 23: 26. Published online 2023 Jul 31. doi: 10.1186/s12896-023-00797-3

PMCID:: PMC10391896

Article PDF–4.1M

Select item 67241157.

Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology

Yun Gyeong Lee, Sang Chul Choi, Yuna Kang, Kyeong Min Kim, Chon-Sik Kang, Changsoo Kim

Plants (Basel) 2019 Aug; 8(8): 270. Published online 2019 Aug 6. doi: 10.3390/plants8080270

PMCID:: PMC6724115

Article PDF–1.1M

Select item 83620598.

An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome

Ann M. McCartney, Elena Hilario, Seung‐Sub Choi, Joseph Guhlin, Jessica M. Prebble, Gary Houliston, Thomas R. Buckley, David Chagné

Mol Ecol Resour. 2021 Aug; 21(6): 2125–2144. Published online 2021 Jun 19. doi: 10.1111/1755-0998.13406

PMCID:: PMC8362059

Article PDF–1.9M

Select item 27361809.

Etude comparative des performances de reproduction des truies de races Créole et Large white en Guadeloupe

I Canope, Y Raynaud, F Hedreville, E Despois, B Racon

Ann Genet Sel Anim. 1980; 12(3): 267–280. French. DOI : 10.1186/1297-9686-12-3-267

PMCID:: PMC2736180

Summary PDF–619K

Select item 757305910.

Evaluation of assembly methods combining long-reads and short-reads to obtain Paenibacillus sp. R4 high-quality complete genome

Seung Chul Shin, Woong Choi, Junhyuck Lee, Hyo Jin Kim, Han-Woo Kim

3 Biotech. 2020 Nov; 10(11): 480. Published online 2020 Oct 19. doi: 10.1007/s13205-020-02474-0

PMCID:: PMC7573059

Article PDF–3.1M

Select item 734723211.

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

Aleksey V. Zimin, Steven L. Salzberg

PLoS Comput Biol. 2020 Jun; 16(6): e1007981. Published online 2020 Jun 26. doi: 10.1371/journal.pcbi.1007981

PMCID:: PMC7347232

Article PDF–477K

Select item 748138412.

High-Quality Genome Assembly of Fusarium oxysporum f. sp. lini

George S. Krasnov, Elena N. Pushkova, Roman O. Novakovskiy, Ludmila P. Kudryavtseva, Tatiana A. Rozhmina, Ekaterina M. Dvorianinova, Liubov V. Povkhova, Anna V. Kudryavtseva, Alexey A. Dmitriev, Nataliya V. Melnikova

Front Genet. 2020; 11: 959. Published online 2020 Aug 27. doi: 10.3389/fgene.2020.00959

PMCID:: PMC7481384

Article PDF–1.8M

Select item 801115413.

Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Yao-Ting Huang, Po-Yu Liu, Pei-Wen Shih

Genome Biol. 2021; 22: 95. Published online 2021 Mar 31. doi: 10.1186/s13059-021-02282-6

PMCID:: PMC8011154

Article PDF–1.5M

Select item 1089333114.

Three Rounds of Read Correction Significantly Improve Eukaryotic Protein Detection in ONT Reads

Hussain A. Safar, Fatemah Alatar, Abu Salim Mustafa

Microorganisms. 2024 Feb; 12(2): 247. Published online 2024 Jan 24. doi: 10.3390/microorganisms12020247

PMCID:: PMC10893331

Article PDF–11M

Select item 874353615.

Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis

Nilay Peker, Leonard Schuele, Nienke Kok, Miguel Terrazos, Stefan M. Neuenschwander, Jessica de Beer, Onno Akkerman, Silke Peter, Alban Ramette, Matthias Merker, Stefan Niemann, Natacha Couto, Bhanu Sinha, John WA Rossen

Microb Genom. 2021; 7(11): 000695. Published online 2021 Nov 26. doi: 10.1099/mgen.0.000695

PMCID:: PMC8743536

Article PDF–4.2M

Select item 682133216.

ntEdit: scalable genome sequence polishing

René L Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J M Jones, Jean Bousquet, Joerg Bohlmann, Inanç Birol

Bioinformatics. 2019 Nov 1; 35(21): 4430–4432. Published online 2019 May 16. doi: 10.1093/bioinformatics/btz400

PMCID:: PMC6821332

Article PDF–229K

Select item 845583217.

Genome Assembly and Sex-Determining Region of Male and Female Populus × sibirica

Nataliya V. Melnikova, Elena N. Pushkova, Ekaterina M. Dvorianinova, Artemy D. Beniaminov, Roman O. Novakovskiy, Liubov V. Povkhova, Nadezhda L. Bolsheva, Anastasiya V. Snezhkina, Anna V. Kudryavtseva, George S. Krasnov, Alexey A. Dmitriev

Front Plant Sci. 2021; 12: 625416. Published online 2021 Sep 8. doi: 10.3389/fpls.2021.625416

PMCID:: PMC8455832

Article PDF–5.4M

Select item 1029883418.

Establishment of an eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled from Short and Long Reads

William D. Law, René L. Warren, Andrew S. McCallion

Genomics. Author manuscript; available in PMC 2023 Jun 27.

Published in final edited form as: Genomics. 2020 May; 112(3): 2379–2384. Published online 2020 Jan 18. doi: 10.1016/j.ygeno.2020.01.009

PMCID:: PMC10298834

Article PDF–852K

Select item 815772219.

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand, Yi Chen, Elizabeth Reed, Narjol Gonzalez-Escalona, Errol Strain, Hugh Rand, Mihai Pop, Andrea Ottesen

BMC Genomics. 2021; 22: 389. Published online 2021 May 26. doi: 10.1186/s12864-021-07702-2