noncondensing - PMC

Trevor Cickovski, Kedar Aras, Mark S. Alber, Jesus A. Izaguirre, Maciej Swat, James A. Glazier, Roeland M.H. Merks, Tilmann Glimm, H. George E. Hentschel, Stuart A. Newman

Comput Sci Eng. Author manuscript; available in PMC 2009 Jun 11.

Published in final edited form as: Comput Sci Eng. 2007; 9(4): 50–60. doi: 10.1109/MCSE.2007.74

PMCID:: PMC2695324

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Multi-Scale Modeling of Tissues Using CompuCell3D

Maciej H. Swat, Gilberto L. Thomas, Julio M. Belmonte, Abbas Shirinifard, Dimitrij Hmeljak, James A. Glazier

Methods Cell Biol. Author manuscript; available in PMC 2013 Apr 1.

Published in final edited form as: Methods Cell Biol. 2012; 110: 325–366. doi: 10.1016/B978-0-12-388403-9.00013-8

PMCID:: PMC3612985

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Bio-optimized energy transfer in densely packed fluorescent protein enables near-maximal luminescence and solid-state lasers

Malte C. Gather, Seok Hyun Yun

Nat Commun. Author manuscript; available in PMC 2015 Apr 4.

Published in final edited form as: Nat Commun. 2014; 5: 5722. Published online 2014 Dec 8. doi: 10.1038/ncomms6722

PMCID:: PMC4385288

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Advanced in developmental organic and inorganic nanomaterial: a review

Khalisanni Khalid, Xuefei Tan, Hayyiratul Fatimah Mohd Zaid, Yang Tao, Chien Lye Chew, Dinh-Toi Chu, Man Kee Lam, Yeek-Chia Ho, Jun Wei Lim, Lai Chin Wei

Bioengineered. 2020; 11(1): 328–355. Published online 2020 Mar 6. doi: 10.1080/21655979.2020.1736240

PMCID:: PMC7161543

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Study on the Staged and Direct Fast Pyrolysis Behavior of Waste Pine Sawdust Using High Heating Rate TG-FTIR and Py-GC/MS

Jinhong Zhang, Daniel T. Sekyere, Noah Niwamanya, Yansheng Huang, Andrew Barigye, Yuanyu Tian

ACS Omega. 2022 Feb 8; 7(5): 4245–4256. Published online 2022 Jan 25. doi: 10.1021/acsomega.1c05907

PMCID:: PMC8829856

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Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67

Nils A. Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M. Berger, Nikos S. Hatzakis, Taekjip Ha

J Phys Chem B. 2023 Mar 9; 127(9): 1922–1931. Published online 2023 Feb 28. doi: 10.1021/acs.jpcb.2c07011

PMCID:: PMC10009747

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Biophysical analysis of the plant-specific GIPC sphingolipids reveals multiple modes of membrane regulation

Adiilah Mamode Cassim, Yotam Navon, Yu Gao, Marion Decossas, Laetitia Fouillen, Axelle Grélard, Minoru Nagano, Olivier Lambert, Delphine Bahammou, Pierre Van Delft, Lilly Maneta-Peyret, Françoise Simon-Plas, Laurent Heux, Bruno Jean, Giovanna Fragneto, Jenny C. Mortimer, Magali Deleu, Laurence Lins, Sébastien Mongrand

J Biol Chem. 2021 Jan-Jun; 296: 100602. Published online 2021 Mar 27. doi: 10.1016/j.jbc.2021.100602

PMCID:: PMC8099651

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miRNAs in gastrointestinal diseases: can we effectively deliver RNA-based therapeutics orally?

A K M Nawshad Hossian, Gerardo G Mackenzie, George Mattheolabakis

Nanomedicine (Lond) 2019 Dec; 14(21): 2873–2889. Published online 2019 Nov 18. doi: 10.2217/nnm-2019-0180

PMCID:: PMC7026766

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Environmental Disinfection of a Dental Clinic during the Covid-19 Pandemic: A Narrative Insight

Antonio Scarano, Francesco Inchingolo, Felice Lorusso

Biomed Res Int. 2020; 2020: 8896812. Published online 2020 Oct 28. doi: 10.1155/2020/8896812

PMCID:: PMC7596431

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Exoplanet Biosignatures: Understanding Oxygen as a Biosignature in the Context of Its Environment

Victoria S. Meadows, Christopher T. Reinhard, Giada N. Arney, Mary N. Parenteau, Edward W. Schwieterman, Shawn D. Domagal-Goldman, Andrew P. Lincowski, Karl R. Stapelfeldt, Heike Rauer, Shiladitya DasSarma, Siddharth Hegde, Norio Narita, Russell Deitrick, Jacob Lustig-Yaeger, Timothy W. Lyons, Nicholas Siegler, J. Lee Grenfell

Astrobiology. 2018 Jun 1; 18(6): 630–662. Published online 2018 Jun 1. doi: 10.1089/ast.2017.1727

PMCID:: PMC6014580

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Skeletal-Vascular Interactions in Bone Development, Homeostasis, and Pathological Destruction

Haruhisa Watanabe, Nako Maishi, Marie Hoshi-Numahata, Mai Nishiura, Atsuko Nakanishi-Kimura, Kyoko Hida, Tadahiro Iimura

Int J Mol Sci. 2023 Jul; 24(13): 10912. Published online 2023 Jun 30. doi: 10.3390/ijms241310912

PMCID:: PMC10341726

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Parameter Space of Atomic Layer Deposition of Ultrathin Oxides on Graphene

Adrianus I. Aria, Kenichi Nakanishi, Long Xiao, Philipp Braeuninger-Weimer, Abhay A. Sagade, Jack A. Alexander-Webber, Stephan Hofmann

ACS Appl Mater Interfaces. 2016 Nov 9; 8(44): 30564–30575. Published online 2016 Oct 10. doi: 10.1021/acsami.6b09596

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Preparation of a Nanoscaled Poly(vinyl alcohol)/Hydroxyapatite/DNA Complex Using High Hydrostatic Pressure Technology for In Vitro and In Vivo Gene Delivery

Tsuyoshi Kimura, Yoichi Nibe, Seiichi Funamoto, Masahiro Okada, Tsutomu Furuzono, Tsutomu Ono, Hidekazu Yoshizawa, Toshiya Fujisato, Kwangwoo Nam, Akio Kishida

J Drug Deliv. 2011; 2011: 962743. Published online 2011 May 12. doi: 10.1155/2011/962743

PMCID:: PMC3134933

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Capillary-Driven Boiling Heat Transfer on Superwetting Microgrooves

Yimin Li, Xiaolong Yang, Xu Tian, Yu Tang

ACS Omega. 2022 Oct 4; 7(39): 35339–35350. Published online 2022 Sep 26. doi: 10.1021/acsomega.2c05381

PMCID:: PMC9535647

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Weak, strong, and coherent regimes of Fröhlich condensation and their applications to terahertz medicine and quantum consciousness

Jeffrey R. Reimers, Laura K. McKemmish, Ross H. McKenzie, Alan E. Mark, Noel S. Hush

Proc Natl Acad Sci U S A. 2009 Mar 17; 106(11): 4219–4224. Published online 2009 Feb 26. doi: 10.1073/pnas.0806273106

PMCID:: PMC2657444

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Exoplanet Biosignatures: A Review of Remotely Detectable Signs of Life

Edward W. Schwieterman, Nancy Y. Kiang, Mary N. Parenteau, Chester E. Harman, Shiladitya DasSarma, Theresa M. Fisher, Giada N. Arney, Hilairy E. Hartnett, Christopher T. Reinhard, Stephanie L. Olson, Victoria S. Meadows, Charles S. Cockell, Sara I. Walker, John Lee Grenfell, Siddharth Hegde, Sarah Rugheimer, Renyu Hu, Timothy W. Lyons

Astrobiology. 2018 Jun 1; 18(6): 663–708. Published online 2018 Jun 1. doi: 10.1089/ast.2017.1729

PMCID:: PMC6016574

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Spermidine-condensed phi X174 DNA cleavage by micrococcal nuclease: torus cleavage model and evidence for unidirectional circumferential DNA wrapping.

K A Marx, T C Reynolds

Proc Natl Acad Sci U S A. 1982 Nov; 79(21): 6484–6488. doi: 10.1073/pnas.79.21.6484

PMCID:: PMC347151

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Mechanical Modulation of Osteochondroprogenitor Cell Fate

Melissa L. Knothe Tate, Thomas D. Falls, Sarah H. McBride, Radhika Atit, Ulf R. Knothe

Int J Biochem Cell Biol. Author manuscript; available in PMC 2015 May 12.

Published in final edited form as: Int J Biochem Cell Biol. 2008; 40(12): 2720–2738. Published online 2008 May 24. doi: 10.1016/j.biocel.2008.05.011

PMCID:: PMC4427832

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Figure 5

Cell type map for an avian limb simulation. A noncondensing cell becomes condensing when exposed to an activator concentration C(x, y, z) above a threshold, and a condensing cell becomes noncondensing when exposed to an activator concentration below a threshold.

From Genes to Organisms Via the Cell A Problem-Solving Environment for Multicellular Development

Comput Sci Eng. ;9(4):50-60.
Fig. 8

Snapshots of the cell-lattice configurations for the cell-sorting simulation in . The boundary-energy hierarchy drives NonCondensing (light grey) cells to surround Condensing (dark grey) cells. The white background denotes surrounding Medium.

Multi-Scale Modeling of Tissues Using CompuCell3D

Methods Cell Biol. ;110:325-366.
Figure 8

Snapshots of the cell-lattice configurations for the cell-sorting simulation in Listing 3. The boundary-energy hierarchy drives NonCondensing (light grey) cells to surround Condensing (dark grey) cells. The white background denotes surrounding Medium.

Multi-Cell Simulations of Development and Disease Using the CompuCell3D Simulation Environment

Methods Mol Biol. ;500:361-428.
Figure 1

Plot of first differences in temperature anomalies and total radiative forcing (by all noncondensing GHGs). Source: Muller et al. [].

Applying Econometrics to the Carbon Dioxide “Control Knob”

ScientificWorldJournal. 2012;2012:761473.