Results: 3

Figure 3

Figure 3. GSEA analysis of the definitive endoderm (DE) gene sets for the day 5 SOX17+GATA4+CXCR4+ group.. From: A New FACS Approach Isolates hESC Derived Endoderm Using Transcription Factors.

As shown in (A–C), the MGI gene set is highly enriched in the d5 SOX17+GATA4+CXCR4+ cells in multiple comparisons. d5SOX17+GATA4+CXCR4+ vs. hESC (unfixed hESCs+fixed hESCs): P<0.0002 (A); d5SOX17+GATA4+CXCR4+ vs. Unsort1 (d3Fix+d3 SOX17GATA+d5Fix.1+d5Fix.3): P = 0.0304 (B); and d5 SOX17+GATA4+CXCR4+ vs Unsort2 (d5Fix.2+d5Fix.4): P = 0.0013 (C). We repeated the GSEA analysis on the Melton gene set. This gene set is enriched in d5SOX17+GATA4+CXCR4+ cells in all comparisons (D–F).

Yuqiong Pan, et al. PLoS One. 2011;6(3):e17536.
Figure 1

Figure 1. Endodermal subpopulations emerging after activin A treatment using tfFACS.. From: A New FACS Approach Isolates hESC Derived Endoderm Using Transcription Factors.

(A) A representative experiment using two-channel FACS analysis of GATA4 and SOX17. Compared with the isotype negative control (bottom panels), three distinct cellular populations: SOX17+GATA4, SOX17+GATA4+, and SOX17GATA4+ are emerging gradually upon differentiation: at day 1, 13% are SOX17+GATA4+, increasing to 23% by day 3. Another significant population consists of 18% SOX17GATA4+ at day 1 and 25% at day 3. (B) After 5 days of differentiation, using three-way multichannel FACS analysis for SOX17, GATA4, and CXCR4, we found that the SOX17+GATA4+ population dominates the culture (62%) and CXCR4 is expressed in 49% of the cells, most of which are SOX17+GATA4+CXCR4+ (41%). There are also approximately 27% GATA4+CXCR4 cells, which comprises the population of SOX17+GATA4+CXCR4 cells (21%). (C) Post sorting, FACS analysis demonstrated that 97% of day 5 SOX17+GATA4+CXCR4+ cells were positive for GATA4, 88% were SOX17 positive, and 95% were CXCR4 positive. This was consistent over 5 separate experiments. (D) Expression analysis using RT-qPCR demonstrates that day 5 SOX17+GATA4+CXCR4+ and day3 SOX17+GATA4+ cells have higher level of expression of SOX17, GATA4 and CXCR4 than unsorted fixed cells or day 3 SOX17GATA4 (d3SOX17negGATA4neg) cells.

Yuqiong Pan, et al. PLoS One. 2011;6(3):e17536.

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