Results: 4

1.
FIG. 3.

FIG. 3. From: Genome-Wide Detection and Characterization of Endogenous Retroviruses in Bos taurus .

Partial amino acid sequence of the RT region of the representative ERVs from the 24 putative families. The positions of the functional motifs LPQG and YV/MDD are boxed.

Koldo Garcia-Etxebarria, et al. J Virol. 2010 October;84(20):10852-10862.
2.
FIG. 1.

FIG. 1. From: Genome-Wide Detection and Characterization of Endogenous Retroviruses in Bos taurus .

Diagram representing the number of ERVs detected by each detection method (represented by the circle size) and common elements detected by two or more methods (included in the overlapping areas).

Koldo Garcia-Etxebarria, et al. J Virol. 2010 October;84(20):10852-10862.
3.
FIG. 4.

FIG. 4. From: Genome-Wide Detection and Characterization of Endogenous Retroviruses in Bos taurus .

RT region-based unrooted phylogenetic tree of ERVs from different species. Topology is based on Bayesian inference (106 generations). In the branches on the left, the maximum likelihood bootstrap value is shown; on the right, the Bayesian posterior probability is shown. Sixteen representative sequences from human ERV families (40), 38 from chimpanzees (29), 27 from mice (2, 23), 7 from rats (2), 14 from sheep (17), 8 from pigs (27), and 24 from cows (our data) are included. Representatives of BoERV families are boxed.

Koldo Garcia-Etxebarria, et al. J Virol. 2010 October;84(20):10852-10862.
4.
FIG. 2.

FIG. 2. From: Genome-Wide Detection and Characterization of Endogenous Retroviruses in Bos taurus .

RT region-based phylogenetic tree of BoERVs. A total of 247 BoERVs detected by at least two methods and with the pol gene longer than 500 nucleotides from this work were included. Eight experimentally detected cow ERVs (43) and 12 sheep ERVs (17) were also included. Retroviruses used as queries and retroviruses used in previous phylogenetic studies, such as gibbon ape leukemia virus (GALV) (GenBank accession number NC_001885), MLV (accession number NC_001501), feline leukemia virus (FeLV) (accession number NC_001940), Jaagsiekte sheep retrovirus (JSRV) (accession number NC_001494), mouse mammary tumor virus (MMTV) (accession number NC_001503), bovine leukemia virus (BLV) (accession number NC_001414), human T-lymphotropic virus (HTLV) (accession number NC_001436), equine infectious anemia virus (EIAV) (accession number NC_001450), HIV (accession number NC_001803), Visna virus (accession number NC_001452), human spumaretrovirus (HSRV) (accession number NC_001795), bovine coronavirus (BCV) (accession number NC_001831), BoEV (accession number X99924), HERV-E (accession number M10976), PERV (accession number AJ293656), MPMV (accession number NC_001550), IAPM (accession number M17551), OMVV (accession number NC_001511), FeFV (accession number U78765), and MuERV-L (accession number Y12713), were used as an outgroup. Topology was based on the neighbor-joining method with a p distance of 1,000 bootstrap. The tree was rooted with the Drosophila melanogaster ZAM (accession number AJ000387) element. Above the branches, the NJ bootstrap values and ML bootstrap values are shown; below the branches, the Bayesian posterior probability is shown.

Koldo Garcia-Etxebarria, et al. J Virol. 2010 October;84(20):10852-10862.

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