Results: 5

1.
Fig. 2.

Fig. 2. From: Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners.

V. fischeri ES114 ORFs on the + and - strands, color-coded to functionality (see key).

E. G. Ruby, et al. Proc Natl Acad Sci U S A. 2005 February 22;102(8):3004-3009.
2.
Fig. 4.

Fig. 4. From: Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners.

The TCP gene cluster in V. fischeri ES114 (green) and V. cholerae N16961 (red). V. fischeri has no identifiable homologs of aldA, tagA, toxT,or tcpJ, and the V. fischeri ORF labeled “hyp.” has no detectable similarity to V. cholerae tcpR.

E. G. Ruby, et al. Proc Natl Acad Sci U S A. 2005 February 22;102(8):3004-3009.
3.
Fig. 3.

Fig. 3. From: Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners.

Comparison of the V. cholerae CTX phage locus (A) with a homologous locus in V. fischeri ES114 (B). ORFs encoding the CTX genes ctxA and ctxB, and the second RS2 element downstream of the locus, are missing in V. fischeri. Identifiable attL and attR sites are indicated.

E. G. Ruby, et al. Proc Natl Acad Sci U S A. 2005 February 22;102(8):3004-3009.
4.
Fig. 5.

Fig. 5. From: Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners.

G+C content of ORFs in and around the TCP gene clusters of V. fischeri ES114 (green) and V. cholerae N16961 (red) plotted against their relative linear position on the chromosome. The average G+C content of the two species' genomes are indicated by the colored dotted lines, and the arrow points to the locations of their TcpA pilin ORFs, around which the rest of the sequences have been aligned.

E. G. Ruby, et al. Proc Natl Acad Sci U S A. 2005 February 22;102(8):3004-3009.
5.
Fig. 1.

Fig. 1. From: Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners.

Genome maps of Chr I (2.9 Mbp) and Chr II (1.3 Mbp) of V. fischeri ES114. (From the inside) Ring 1, rrn operons (red); tRNAs (green). Ring 2, “foreign” elements (black). Ring 3, type IV pilus loci (red). Circle 1, G+C content over a 200-kb window with 5-kb steps; red and blue denote G+C content higher and lower than average, respectively. Circle 2, homology on + and - strands to V. cholerae N16961 ORFs, determined by using FASTA; red, e value < -30; green, e value > -30. Circle 3, location in kilobases.

E. G. Ruby, et al. Proc Natl Acad Sci U S A. 2005 February 22;102(8):3004-3009.

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