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1.
Figure 3

Figure 3. From: The Rat Genome Database (RGD): developments towards a phenome database.

A schematic diagram illustrating the flow of data between RGD and our collaborators. More than just an exchange of information, a large amount of RGD data that has been curated and quality controlled finds its way to other major databases and genome browsers.

Norberto de la Cruz, et al. Nucleic Acids Res. 2005 January 1;33(Database issue):D485-D491.
2.
Figure 1

Figure 1. From: The Rat Genome Database (RGD): developments towards a phenome database.

Sections of the Ontology and Gene reports. The ontology report (a) provides details on an ontology term including links to data on objects annotated to it. The gene report (b) provides links to ontology terms to which it is annotated. These reciprocal links enable users to move through various ontologies and find related terms and the objects annotated to them.

Norberto de la Cruz, et al. Nucleic Acids Res. 2005 January 1;33(Database issue):D485-D491.
3.
Figure 2

Figure 2. From: The Rat Genome Database (RGD): developments towards a phenome database.

A section of a map from RGD's Genome Browser showing QTL, genes and SNP tracks juxtaposed against ‘ontology tracks’. This display enables users to quickly survey biological information annotated to sequence features such as genes and QTLs and correlate the annotations with other features in the genome. The drop down menu enables the user to access multiple data reports from the ontology track. From this point, the user can obtain detailed information about the sequence feature (gene), the term to which it is annotated or the set of genes annotated to this term.

Norberto de la Cruz, et al. Nucleic Acids Res. 2005 January 1;33(Database issue):D485-D491.

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