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1.
Figure  6

Figure 6. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

Example LOD-score plots for the subset of pedigrees with an average age at diagnosis of >66 years, to compare the LOD scores for SNPs versus M-STRs.

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.
2.

Figure 2. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

LOD scores for SNPs, shown with versus without the high-LD SNPs. In each panel, the solid line excludes the high-LD SNPs, and the broken line includes them. At the bottom of each panel are tick marks that indicate the positions of the high-LD SNPs.

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.
3.
Figure  4

Figure 4. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

Percentage of genome exceeding different levels of genetic information for SNP markers (dotted line), M-STR markers (dashed line), and the combination of SNPs and M-STRs (solid line).

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.
4.

Figure 3. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

LOD scores for SNP markers (dotted line), M-STR markers (dashed line), and the combination of both SNPs and M-STRs (solid line). The bottom of each panel shows the information content of the three types of analyses.

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.
5.
Figure  1

Figure 1. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

Distribution of pairwise |D| values according to the pairwise distance of SNPs within 5 cM (top panel). The solid horizontal line in the top panel is the threshold for high LD at |D|>0.7. The distribution of the high-LD SNPs is given in the lower left panel, and the distribution of the pairwise distances between the high-LD SNPs is given in the lower right panel.

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.
6.
Figure  5

Figure 5. From: Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer-Susceptibility Loci.

Maximum LOD scores by subset, chromosome, and SNPs versus M-STRs. Age Dx = the mean age at diagnosis per pedigree; Fam Hx = the number of men with prostate cancer in a pedigree; HPC = hereditary prostate cancer by Carter criteria; Pat Trans = paternal transmission. The solid vertical line with the “S” indicates the SNP maximum LOD score, and the broken vertical line with the “M” indicates the M-STR maximum LOD score.

Daniel J. Schaid, et al. Am J Hum Genet. 2004 December;75(6):948-965.

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