SNP Links for PMC (Select 2889537) - SNP

Select item 178174491.

rs17817449 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 16:53779455 (GRCh38)
16:53813367 (GRCh37)
Canonical SPDI:: NC_000016.10:53779454:T:A,NC_000016.10:53779454:T:G
Gene:: FTO (Varview)
Functional Consequence:: intron_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.389389/111971 (ALFA)
G=0.119949/95 (PRJEB37584)
G=0.130375/382 (KOREAN)
G=0.136792/29 (Vietnamese)
G=0.198422/3326 (TOMMO)
G=0.310587/1555 (1000Genomes)
G=0.327636/25783 (PAGE_STUDY)
G=0.355249/670 (HapMap)
T=0.363636/8 (Siberian)
G=0.371743/371 (GoNL)
G=0.373006/98731 (TOPMED)
G=0.385/231 (NorthernSweden)
G=0.391022/1507 (ALSPAC)
T=0.394737/30 (PRJEB36033)
G=0.396643/449 (Daghestan)
G=0.4/16 (GENOME_DK)
G=0.401834/1490 (TWINSUK)
T=0.404/101 (SGDP_PRJ)
G=0.443304/1986 (Estonian)
T=0.490741/106 (Qatari)
HGVS:: NC_000016.10:g.53779455T>A, NC_000016.10:g.53779455T>G, NC_000016.9:g.53813367T>A, NC_000016.9:g.53813367T>G, NG_012969.1:g.80493T>A, NG_012969.1:g.80493T>G

Select item 99396092.

rs9939609 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:53786615 (GRCh38)
16:53820527 (GRCh37)
Canonical SPDI:: NC_000016.10:53786614:T:A
Gene:: FTO (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.398575/33556 (ALFA)
A=0.118687/94 (PRJEB37584)
A=0.130717/383 (KOREAN)
A=0.148148/32 (Vietnamese)
A=0.199696/3347 (TOMMO)
A=0.344004/1723 (1000Genomes)
T=0.363636/8 (Siberian)
A=0.369707/29090 (PAGE_STUDY)
A=0.369739/369 (GoNL)
A=0.385/231 (NorthernSweden)
T=0.388462/101 (SGDP_PRJ)
A=0.389465/1501 (ALSPAC)
A=0.4/16 (GENOME_DK)
A=0.400755/1486 (TWINSUK)
A=0.400918/106119 (TOPMED)
A=0.402998/457 (Daghestan)
A=0.407615/728 (HapMap)
A=0.415947/58211 (GnomAD)
A=0.443527/1987 (Estonian)
T=0.467593/101 (Qatari)
A=0.484848/32 (PRJEB36033)
HGVS:: NC_000016.10:g.53786615T>A, NC_000016.9:g.53820527T>A, NG_012969.1:g.87653T>A

Select item 37518123.

rs3751812 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:53784548 (GRCh38)
16:53818460 (GRCh37)
Canonical SPDI:: NC_000016.10:53784547:G:T
Gene:: FTO (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.383877/85173 (ALFA)
T=0.117722/93 (PRJEB37584)
T=0.131058/384 (KOREAN)
T=0.150943/32 (Vietnamese)
T=0.19966/3346 (TOMMO)
T=0.20296/384 (HapMap)
T=0.217208/1088 (1000Genomes)
T=0.239443/499 (HGDP_Stanford)
T=0.276165/73098 (TOPMED)
T=0.296651/41524 (GnomAD)
G=0.363636/8 (Siberian)
T=0.369739/369 (GoNL)
T=0.383333/230 (NorthernSweden)
T=0.387649/1494 (ALSPAC)
T=0.392035/443 (Daghestan)
T=0.398328/1477 (TWINSUK)
T=0.4/16 (GENOME_DK)
G=0.401961/82 (SGDP_PRJ)
T=0.442857/1984 (Estonian)
T=0.449074/97 (Qatari)
G=0.5/42 (PRJEB36033)
HGVS:: NC_000016.10:g.53784548G>T, NC_000016.9:g.53818460G>T, NG_012969.1:g.85586G>T

Select item 14210854.

rs1421085 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:53767042 (GRCh38)
16:53800954 (GRCh37)
Canonical SPDI:: NC_000016.10:53767041:T:C
Gene:: FTO (Varview), LOC124903691 (Varview)
Functional Consequence:: intron_variant
Clinical significance:: risk-factor
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.391113/117151 (ALFA)
C=0.121212/96 (PRJEB37584)
C=0.130034/381 (KOREAN)
C=0.149533/32 (Vietnamese)
C=0.192091/15116 (PAGE_STUDY)
C=0.197431/3309 (TOMMO)
C=0.208599/393 (HapMap)
C=0.226109/1132 (1000Genomes)
T=0.235294/8 (PRJEB36033)
C=0.284556/75319 (TOPMED)
C=0.306399/42894 (GnomAD)
T=0.363636/8 (Siberian)
C=0.377756/377 (GoNL)
C=0.39/234 (NorthernSweden)
C=0.39725/1531 (ALSPAC)
T=0.40566/86 (SGDP_PRJ)
C=0.409655/1519 (TWINSUK)
C=0.425/17 (GENOME_DK)
C=0.433979/493 (Daghestan)
C=0.454018/2034 (Estonian)
T=0.5/108 (Qatari)
HGVS:: NC_000016.10:g.53767042T>C, NC_000016.9:g.53800954T>C, NG_012969.1:g.68080T>C

dbSNP